Wall clock time and date at job start Tue Mar 31 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50703 * 120.00118 * 2 1 4 4 H 1.08998 * 109.87056 * 359.02115 * 3 2 1 5 5 O 1.43745 * 109.87754 * 238.01768 * 3 2 1 6 6 C 1.44575 * 106.86857 * 214.17234 * 5 3 2 7 7 C 1.54998 * 103.58843 * 39.87671 * 6 5 3 8 8 C 1.54100 * 109.88058 * 120.03022 * 3 2 1 9 9 H 1.09003 * 110.48999 * 2.78030 * 8 3 2 10 10 C 1.50696 * 110.48737 * 240.13189 * 8 3 2 11 11 O 1.21282 * 119.99930 * 359.97438 * 10 8 3 12 12 N 1.34773 * 119.99986 * 179.97438 * 10 8 3 13 13 C 1.46501 * 120.00047 * 359.97438 * 12 10 8 14 14 C 1.46507 * 120.00100 * 179.97438 * 12 10 8 15 15 C 1.52999 * 109.46877 * 95.65270 * 14 12 10 16 16 H 1.08998 * 112.96487 * 66.92726 * 15 14 12 17 17 C 1.53940 * 113.76999 * 295.24336 * 15 14 12 18 18 C 1.53950 * 86.29197 * 222.09302 * 17 15 14 19 19 N 1.47579 * 86.11345 * 23.60760 * 18 17 15 20 20 C 1.36948 * 134.49232 * 155.36205 * 19 18 17 21 21 H 1.07999 * 119.99741 * 180.79872 * 20 19 18 22 22 C 1.38811 * 119.99843 * 0.79740 * 20 19 18 23 23 N 1.31627 * 119.99918 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99733 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46931 * 90.00334 * 24 22 20 26 26 H 1.48504 * 109.46739 * 209.99655 * 24 22 20 27 27 H 1.48496 * 109.47612 * 329.99974 * 24 22 20 28 28 H 1.07998 * 120.00261 * 0.27875 * 1 2 3 29 29 H 1.07999 * 120.00303 * 180.27377 * 1 2 3 30 30 H 1.08008 * 120.00260 * 179.72190 * 2 1 3 31 31 H 1.09007 * 110.50391 * 281.38059 * 6 5 3 32 32 H 1.09004 * 110.77722 * 158.50880 * 6 5 3 33 33 H 1.08996 * 110.90799 * 204.85996 * 7 6 5 34 34 H 1.09001 * 110.90525 * 81.25718 * 7 6 5 35 35 H 1.08999 * 109.47063 * 84.55611 * 13 12 10 36 36 H 1.08998 * 109.46851 * 204.54876 * 13 12 10 37 37 H 1.08994 * 109.47383 * 324.55438 * 13 12 10 38 38 H 1.08997 * 109.47159 * 215.65798 * 14 12 10 39 39 H 1.08999 * 109.46778 * 335.65330 * 14 12 10 40 40 H 1.08997 * 113.74284 * 336.43797 * 17 15 14 41 41 H 1.08997 * 113.74155 * 107.64206 * 17 15 14 42 42 H 1.08998 * 113.77201 * 137.90738 * 18 17 15 43 43 H 1.08996 * 113.76896 * 269.19763 * 18 17 15 44 44 H 0.96992 * 119.99300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3611 2.1384 -0.0175 5 8 2.9279 1.3704 -1.1466 6 6 4.1107 2.0951 -0.7395 7 6 4.3855 1.5689 0.6923 8 6 2.9535 1.3963 1.2546 9 1 2.8818 0.4801 1.8408 10 6 2.5673 2.5898 2.0897 11 8 1.6640 3.3148 1.7301 12 7 3.2257 2.8515 3.2362 13 6 4.3165 1.9755 3.6708 14 6 2.8506 4.0122 4.0478 15 6 1.8826 3.5734 5.1483 16 1 2.3459 2.9182 5.8859 17 6 0.5338 3.0546 4.6177 18 6 -0.1112 3.8548 5.7638 19 7 1.1094 4.6837 5.7378 20 6 1.4058 5.9677 6.1108 21 1 2.4051 6.3531 5.9725 22 6 0.4217 6.7736 6.6667 23 7 -0.7964 6.3039 6.8347 24 14 0.8258 8.5251 7.1748 25 1 0.5811 9.4411 6.0318 26 1 -0.0354 8.9198 8.3185 27 1 2.2526 8.6069 7.5782 28 1 -0.5400 0.9353 -0.0046 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0045 31 1 3.9149 3.1673 -0.7234 32 1 4.9488 1.8691 -1.3989 33 1 4.9464 2.3000 1.2744 34 1 4.9092 0.6135 0.6617 35 1 5.2429 2.2796 3.1837 36 1 4.4333 2.0498 4.7520 37 1 4.0850 0.9453 3.4003 38 1 3.7438 4.4432 4.5000 39 1 2.3681 4.7572 3.4151 40 1 0.2800 3.4272 3.6253 41 1 0.4115 1.9755 4.7105 42 1 -1.0134 4.3919 5.4712 43 1 -0.2362 3.2825 6.6830 44 1 -1.4838 6.8669 7.2234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085822321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:17 Heat of formation + Delta-G solvation = 6.471869 kcal Electronic energy + Delta-G solvation = -24735.351668 eV Core-core repulsion = 21269.738960 eV Total energy + Delta-G solvation = -3465.612709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74235 -38.78771 -37.49236 -35.35040 -33.97247 -32.56141 -32.01180 -28.88091 -28.24186 -27.78029 -26.46935 -23.75558 -23.21811 -22.68311 -21.78021 -20.14211 -19.15207 -18.90112 -17.04773 -16.73009 -16.60707 -16.31761 -15.58786 -15.20996 -15.05040 -14.64058 -14.10487 -14.02213 -13.62014 -13.54668 -13.26527 -13.00347 -12.68005 -12.52859 -12.25305 -11.97111 -11.76502 -11.49811 -11.35014 -11.27199 -11.16489 -10.98421 -10.82443 -10.66182 -10.40586 -9.90756 -9.80963 -9.73557 -9.66539 -9.51634 -9.36162 -8.74556 -8.36110 -6.81677 -5.70875 -3.03265 2.05039 2.71522 3.07022 3.41950 3.46054 3.48252 3.84811 4.26003 4.41716 4.49791 4.53450 4.74353 4.91276 5.05966 5.08818 5.12591 5.20596 5.28954 5.37029 5.45860 5.48284 5.50440 5.60418 5.66367 5.69742 5.72097 5.89221 5.92942 5.97501 6.13991 6.39891 6.44463 6.57219 6.59339 6.70060 6.74221 6.78707 6.83779 7.32567 7.48357 7.59599 7.66927 8.04651 8.32070 9.09590 9.76518 10.66925 11.46127 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.003868 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.444770 B = 7236.838724 C = 7634.100931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.160 4.160 3 C 0.112 3.888 4 H 0.100 0.900 5 O -0.369 6.369 6 C 0.045 3.955 7 C -0.146 4.146 8 C -0.136 4.136 9 H 0.111 0.889 10 C 0.519 3.481 11 O -0.524 6.524 12 N -0.606 5.606 13 C 0.077 3.923 14 C 0.115 3.885 15 C 0.129 3.871 16 H 0.040 0.960 17 C -0.158 4.158 18 C 0.161 3.839 19 N -0.600 5.600 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 -14.524 -11.851 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.054 3.946 4 H 0.117 0.883 5 O -0.288 6.288 6 C -0.031 4.031 7 C -0.184 4.184 8 C -0.158 4.158 9 H 0.129 0.871 10 C 0.306 3.694 11 O -0.400 6.400 12 N -0.339 5.339 13 C -0.067 4.067 14 C -0.008 4.008 15 C 0.021 3.979 16 H 0.057 0.943 17 C -0.196 4.196 18 C 0.036 3.964 19 N -0.326 5.326 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.411 -13.875 -12.084 21.140 hybrid contribution 0.417 0.874 0.939 1.349 sum 10.828 -13.000 -11.145 20.260 Atomic orbital electron populations 1.23977 0.95811 1.02477 0.97885 1.22803 0.95872 0.97278 1.01900 1.21900 0.92156 0.97228 0.83314 0.88269 1.88942 1.30290 1.76405 1.33154 1.23589 0.88382 0.96580 0.94575 1.23222 0.95063 1.03102 0.97003 1.22644 0.96623 0.98830 0.97714 0.87120 1.20153 0.82083 0.86067 0.81106 1.90712 1.29507 1.49418 1.70392 1.47762 1.34789 1.28893 1.22491 1.21858 0.89428 0.94004 1.01361 1.21861 0.98811 0.86881 0.93277 1.22498 0.92712 0.90448 0.92287 0.94277 1.23816 0.97390 0.97335 1.01058 1.22168 0.92527 0.89209 0.92519 1.45941 1.06501 1.07294 1.72872 1.18976 0.95831 0.85852 1.34412 0.90453 1.24765 0.95797 0.98344 1.01436 1.69839 1.01611 1.35680 1.49521 0.86163 0.77250 0.84655 0.77931 1.21534 1.21692 1.20770 0.87904 0.87903 0.87028 0.91877 0.88694 0.89366 0.89431 0.92671 0.90560 0.91515 0.91500 0.88799 0.89606 0.94102 0.91075 0.95926 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 14.32 29.02 0.42 -1.32 16 2 C -0.16 -1.76 8.94 -36.02 -0.32 -2.08 16 3 C 0.11 1.40 3.40 -27.31 -0.09 1.31 16 4 H 0.10 1.51 6.10 -51.93 -0.32 1.20 16 5 O -0.37 -4.69 11.19 -35.23 -0.39 -5.08 16 6 C 0.05 0.45 7.72 38.21 0.29 0.74 16 7 C -0.15 -1.24 5.96 -24.72 -0.15 -1.39 16 8 C -0.14 -1.51 2.14 -90.25 -0.19 -1.70 16 9 H 0.11 1.04 6.86 -51.93 -0.36 0.69 16 10 C 0.52 7.69 6.54 -10.99 -0.07 7.62 16 11 O -0.52 -10.01 13.18 5.56 0.07 -9.94 16 12 N -0.61 -8.46 2.77 -181.57 -0.50 -8.96 16 13 C 0.08 0.72 9.16 59.85 0.55 1.27 16 14 C 0.11 2.06 5.38 -4.04 -0.02 2.03 16 15 C 0.13 2.65 4.58 -66.87 -0.31 2.35 16 16 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.16 -3.29 7.25 -25.81 -0.19 -3.48 16 18 C 0.16 4.02 7.50 -2.97 -0.02 4.00 16 19 N -0.60 -15.66 3.57 -170.77 -0.61 -16.27 16 20 C -0.22 -6.31 10.51 -15.05 -0.16 -6.46 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -27.97 11.40 55.49 0.63 -27.34 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.10 1.17 7.85 -52.49 -0.41 0.76 16 29 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.71 5.97 -51.93 -0.31 0.40 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.41 6.90 -51.93 -0.36 0.05 16 36 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 38 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 39 H 0.09 2.00 7.26 -51.93 -0.38 1.62 16 40 H 0.09 1.93 6.56 -51.93 -0.34 1.59 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.97 7.19 -51.93 -0.37 1.59 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -33.88 350.42 -7.86 -41.74 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.95 Total: 0.52 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.36 Total: 2.59 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.48 Total: -52.57 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.32 Total: -15.02 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.88 -7.86 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.209 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds