Wall clock time and date at job start Tue Mar 31 2020 03:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50703 * 120.00118 * 2 1 4 4 H 1.08998 * 109.87056 * 359.02115 * 3 2 1 5 5 O 1.43745 * 109.87754 * 238.01768 * 3 2 1 6 6 C 1.44575 * 106.86857 * 214.17234 * 5 3 2 7 7 C 1.54998 * 103.58843 * 39.87671 * 6 5 3 8 8 C 1.54100 * 109.88058 * 120.03022 * 3 2 1 9 9 H 1.09003 * 110.48999 * 2.78030 * 8 3 2 10 10 C 1.50696 * 110.48737 * 240.13189 * 8 3 2 11 11 O 1.21282 * 119.99930 * 359.97438 * 10 8 3 12 12 N 1.34773 * 119.99986 * 179.97438 * 10 8 3 13 13 C 1.46501 * 120.00047 * 359.97438 * 12 10 8 14 14 C 1.46507 * 120.00100 * 179.97438 * 12 10 8 15 15 C 1.52999 * 109.46877 * 95.65270 * 14 12 10 16 16 H 1.08998 * 112.96487 * 66.92726 * 15 14 12 17 17 C 1.53940 * 113.76999 * 295.24336 * 15 14 12 18 18 C 1.53950 * 86.29197 * 222.09302 * 17 15 14 19 19 N 1.47579 * 86.11345 * 23.60760 * 18 17 15 20 20 C 1.36948 * 134.49232 * 155.36205 * 19 18 17 21 21 H 1.07999 * 119.99741 * 180.79872 * 20 19 18 22 22 C 1.38811 * 119.99843 * 0.79740 * 20 19 18 23 23 N 1.31627 * 119.99918 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99733 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46931 * 90.00334 * 24 22 20 26 26 H 1.48504 * 109.46739 * 209.99655 * 24 22 20 27 27 H 1.48496 * 109.47612 * 329.99974 * 24 22 20 28 28 H 1.07998 * 120.00261 * 0.27875 * 1 2 3 29 29 H 1.07999 * 120.00303 * 180.27377 * 1 2 3 30 30 H 1.08008 * 120.00260 * 179.72190 * 2 1 3 31 31 H 1.09007 * 110.50391 * 281.38059 * 6 5 3 32 32 H 1.09004 * 110.77722 * 158.50880 * 6 5 3 33 33 H 1.08996 * 110.90799 * 204.85996 * 7 6 5 34 34 H 1.09001 * 110.90525 * 81.25718 * 7 6 5 35 35 H 1.08999 * 109.47063 * 84.55611 * 13 12 10 36 36 H 1.08998 * 109.46851 * 204.54876 * 13 12 10 37 37 H 1.08994 * 109.47383 * 324.55438 * 13 12 10 38 38 H 1.08997 * 109.47159 * 215.65798 * 14 12 10 39 39 H 1.08999 * 109.46778 * 335.65330 * 14 12 10 40 40 H 1.08997 * 113.74284 * 336.43797 * 17 15 14 41 41 H 1.08997 * 113.74155 * 107.64206 * 17 15 14 42 42 H 1.08998 * 113.77201 * 137.90738 * 18 17 15 43 43 H 1.08996 * 113.76896 * 269.19763 * 18 17 15 44 44 H 0.96992 * 119.99300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3611 2.1384 -0.0175 5 8 2.9279 1.3704 -1.1466 6 6 4.1107 2.0951 -0.7395 7 6 4.3855 1.5689 0.6923 8 6 2.9535 1.3963 1.2546 9 1 2.8818 0.4801 1.8408 10 6 2.5673 2.5898 2.0897 11 8 1.6640 3.3148 1.7301 12 7 3.2257 2.8515 3.2362 13 6 4.3165 1.9755 3.6708 14 6 2.8506 4.0122 4.0478 15 6 1.8826 3.5734 5.1483 16 1 2.3459 2.9182 5.8859 17 6 0.5338 3.0546 4.6177 18 6 -0.1112 3.8548 5.7638 19 7 1.1094 4.6837 5.7378 20 6 1.4058 5.9677 6.1108 21 1 2.4051 6.3531 5.9725 22 6 0.4217 6.7736 6.6667 23 7 -0.7964 6.3039 6.8347 24 14 0.8258 8.5251 7.1748 25 1 0.5811 9.4411 6.0318 26 1 -0.0354 8.9198 8.3185 27 1 2.2526 8.6069 7.5782 28 1 -0.5400 0.9353 -0.0046 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0045 31 1 3.9149 3.1673 -0.7234 32 1 4.9488 1.8691 -1.3989 33 1 4.9464 2.3000 1.2744 34 1 4.9092 0.6135 0.6617 35 1 5.2429 2.2796 3.1837 36 1 4.4333 2.0498 4.7520 37 1 4.0850 0.9453 3.4003 38 1 3.7438 4.4432 4.5000 39 1 2.3681 4.7572 3.4151 40 1 0.2800 3.4272 3.6253 41 1 0.4115 1.9755 4.7105 42 1 -1.0134 4.3919 5.4712 43 1 -0.2362 3.2825 6.6830 44 1 -1.4838 6.8669 7.2234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085822321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:16 Heat of formation + Delta-G solvation = -16.252212 kcal Electronic energy + Delta-G solvation = -24736.337059 eV Core-core repulsion = 21269.738960 eV Total energy + Delta-G solvation = -3466.598099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78532 -40.08950 -39.02984 -36.56435 -34.81265 -34.27676 -33.33722 -30.03116 -29.85076 -29.27224 -27.44589 -25.35303 -24.94707 -23.63192 -22.99219 -21.02108 -20.86693 -20.13533 -18.70113 -17.96208 -17.63952 -17.45679 -16.97617 -16.48492 -16.20779 -16.07558 -15.80126 -15.22544 -14.84491 -14.74823 -14.23544 -14.17605 -13.94935 -13.78789 -13.39945 -13.33686 -13.07120 -12.93053 -12.63642 -12.54065 -12.51545 -12.29088 -12.17844 -12.08835 -11.97427 -11.81751 -11.60509 -11.28723 -10.87210 -10.85851 -10.67199 -10.36188 -9.63435 -8.89521 -7.89174 -5.22614 1.22251 1.43143 1.46481 1.54125 1.60598 1.94170 2.48705 3.01796 3.30248 3.38550 3.46064 3.60212 3.63798 3.89674 4.02076 4.07411 4.22635 4.27235 4.31404 4.35473 4.39180 4.47891 4.49192 4.67296 4.76937 4.80605 4.83179 4.84082 4.86203 4.99635 5.02395 5.03634 5.08205 5.09243 5.23422 5.50954 5.53309 5.60394 5.73717 5.79307 5.88219 5.94513 6.44661 6.91372 7.20116 7.62108 8.58173 9.28395 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.003868 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.444770 B = 7236.838724 C = 7634.100931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.163 4.163 3 C 0.107 3.893 4 H 0.059 0.941 5 O -0.385 6.385 6 C 0.035 3.965 7 C -0.134 4.134 8 C -0.126 4.126 9 H 0.139 0.861 10 C 0.512 3.488 11 O -0.579 6.579 12 N -0.602 5.602 13 C 0.067 3.933 14 C 0.129 3.871 15 C 0.137 3.863 16 H 0.063 0.937 17 C -0.132 4.132 18 C 0.155 3.845 19 N -0.629 5.629 20 C -0.228 4.228 21 H 0.088 0.912 22 C -0.072 4.072 23 N -0.958 5.958 24 Si 0.978 3.022 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.263 1.263 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.041 0.959 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.021 0.979 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 -16.886 -11.927 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.049 3.951 4 H 0.076 0.924 5 O -0.305 6.305 6 C -0.041 4.041 7 C -0.171 4.171 8 C -0.147 4.147 9 H 0.157 0.843 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.334 5.334 13 C -0.075 4.075 14 C 0.005 3.995 15 C 0.030 3.970 16 H 0.081 0.919 17 C -0.171 4.171 18 C 0.029 3.971 19 N -0.356 5.356 20 C -0.356 4.356 21 H 0.105 0.895 22 C -0.265 4.265 23 N -0.607 5.607 24 Si 0.806 3.194 25 H -0.217 1.217 26 H -0.222 1.222 27 H -0.188 1.188 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.060 0.940 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.838 -16.283 -12.170 24.591 hybrid contribution -0.612 1.578 0.886 1.911 sum 13.226 -14.704 -11.283 22.770 Atomic orbital electron populations 1.24115 0.96104 1.02700 0.97930 1.22945 0.95907 0.97360 1.01846 1.21810 0.92167 0.96842 0.84308 0.92363 1.88927 1.31260 1.76582 1.33694 1.23810 0.88258 0.95390 0.96621 1.23280 0.93414 1.05098 0.95302 1.22638 0.97895 0.97666 0.96542 0.84309 1.20914 0.81149 0.86539 0.81276 1.90707 1.32011 1.51470 1.71680 1.47789 1.35682 1.28263 1.21673 1.22248 0.88680 0.94478 1.02054 1.21379 0.98363 0.87736 0.92070 1.22665 0.92941 0.88554 0.92818 0.91917 1.23504 0.96868 0.98501 0.98191 1.22097 0.91392 0.89655 0.93938 1.46285 1.08155 1.07945 1.73201 1.19423 0.96128 0.87144 1.32896 0.89461 1.25652 0.95789 1.02555 1.02460 1.70046 1.02573 1.36968 1.51120 0.85089 0.77760 0.79558 0.77009 1.21700 1.22167 1.18769 0.90015 0.85453 0.84296 0.94027 0.85880 0.88510 0.85819 0.90033 0.90088 0.88729 0.89884 0.93017 0.91712 0.90882 0.94962 0.96083 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 14.32 67.79 0.97 -2.54 16 2 C -0.16 -3.28 8.94 25.66 0.23 -3.05 16 3 C 0.11 2.61 3.40 30.22 0.10 2.72 16 4 H 0.06 1.91 6.10 -2.39 -0.01 1.89 16 5 O -0.38 -9.35 11.19 -148.98 -1.67 -11.02 16 6 C 0.04 0.63 7.72 72.67 0.56 1.19 16 7 C -0.13 -1.72 5.96 31.90 0.19 -1.53 16 8 C -0.13 -2.45 2.14 -10.55 -0.02 -2.48 16 9 H 0.14 1.95 6.86 -2.39 -0.02 1.93 16 10 C 0.51 14.68 6.54 87.66 0.57 15.25 16 11 O -0.58 -23.10 13.18 -3.03 -0.04 -23.14 16 12 N -0.60 -15.41 2.77 -846.76 -2.34 -17.75 16 13 C 0.07 0.93 9.16 127.77 1.17 2.10 16 14 C 0.13 4.51 5.38 86.38 0.46 4.98 16 15 C 0.14 5.51 4.58 45.09 0.21 5.71 16 16 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.13 -5.54 7.25 31.25 0.23 -5.31 16 18 C 0.15 7.98 7.50 86.48 0.65 8.63 16 19 N -0.63 -33.34 3.57 -694.20 -2.48 -35.83 16 20 C -0.23 -13.02 10.51 84.03 0.88 -12.13 16 21 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.96 -60.49 11.40 21.65 0.25 -60.25 16 24 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 H 0.08 1.99 7.85 -2.91 -0.02 1.96 16 29 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.12 5.97 -2.39 -0.01 1.11 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.77 6.90 -2.39 -0.02 0.75 16 36 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.09 0.84 6.57 -2.39 -0.02 0.82 16 38 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 39 H 0.05 2.26 7.26 -2.39 -0.02 2.25 16 40 H 0.06 3.02 6.56 -2.39 -0.02 3.00 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.03 1.89 7.19 -2.39 -0.02 1.87 16 43 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.25 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -79.10 350.42 3.39 -75.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.97 Total: 13.44 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.67 Total: 9.73 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.58 Total: -113.82 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.71 Total: -34.15 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.10 3.39 -75.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.455 kcal (2) G-P(sol) polarization free energy of solvation -79.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds