Wall clock time and date at job start Tue Mar 31 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50696 * 119.99930 * 2 1 4 4 H 1.09002 * 109.87329 * 359.30261 * 3 2 1 5 5 O 1.43741 * 110.00334 * 238.21312 * 3 2 1 6 6 C 1.44382 * 106.98021 * 213.99568 * 5 3 2 7 7 C 1.54993 * 103.48614 * 40.05788 * 6 5 3 8 8 C 1.54104 * 109.87794 * 120.31108 * 3 2 1 9 9 H 1.09002 * 110.48549 * 2.79181 * 8 3 2 10 10 C 1.50697 * 110.48497 * 240.28035 * 8 3 2 11 11 O 1.21280 * 120.00360 * 359.97438 * 10 8 3 12 12 N 1.34783 * 119.99990 * 179.97438 * 10 8 3 13 13 C 1.46499 * 120.00014 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46929 * 180.02562 * 13 12 10 15 15 H 1.08998 * 112.84818 * 316.19545 * 14 13 12 16 16 C 1.53780 * 113.61408 * 87.50372 * 14 13 12 17 17 C 1.53781 * 87.08033 * 139.98137 * 16 14 13 18 18 H 1.08994 * 113.69226 * 220.00550 * 17 16 14 19 19 N 1.46500 * 113.61544 * 89.11079 * 17 16 14 20 20 C 1.36945 * 119.99625 * 107.50138 * 19 17 16 21 21 H 1.07994 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99894 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99970 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00085 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46652 * 90.00122 * 24 22 20 26 26 H 1.48495 * 109.47384 * 210.00179 * 24 22 20 27 27 H 1.48497 * 109.47408 * 330.00253 * 24 22 20 28 28 C 1.53781 * 113.61190 * 185.00133 * 14 13 12 29 29 H 1.07995 * 120.00090 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99549 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99454 * 180.02562 * 2 1 3 32 32 H 1.09000 * 110.61613 * 281.56153 * 6 5 3 33 33 H 1.08993 * 110.75634 * 158.62332 * 6 5 3 34 34 H 1.09004 * 110.90886 * 204.77674 * 7 6 5 35 35 H 1.09008 * 110.90665 * 81.17800 * 7 6 5 36 36 H 0.97002 * 119.99726 * 359.97438 * 12 10 8 37 37 H 1.08997 * 109.47389 * 299.99939 * 13 12 10 38 38 H 1.09005 * 109.46906 * 60.00050 * 13 12 10 39 39 H 1.08998 * 113.60980 * 254.52685 * 16 14 13 40 40 H 1.08994 * 113.61377 * 25.43006 * 16 14 13 41 41 H 0.96998 * 120.00319 * 287.50445 * 19 17 16 42 42 H 0.97001 * 120.00227 * 180.02562 * 23 22 20 43 43 H 1.08998 * 113.61631 * 334.57033 * 28 14 13 44 44 H 1.09006 * 113.61256 * 105.38859 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3611 2.1385 -0.0125 5 8 2.9256 1.3752 -1.1481 6 6 4.1060 2.1024 -0.7453 7 6 4.3880 1.5711 0.6831 8 6 2.9590 1.3932 1.2511 9 1 2.8898 0.4754 1.8351 10 6 2.5739 2.5825 2.0926 11 8 1.6675 3.3070 1.7398 12 7 3.2368 2.8411 3.2373 13 6 2.8628 3.9977 4.0550 14 6 3.7648 4.0628 5.2891 15 1 3.9097 3.0901 5.7593 16 6 5.0727 4.8373 5.0560 17 6 4.8808 5.4292 6.4623 18 1 5.1389 6.4859 6.5317 19 7 5.4873 4.6244 7.5256 20 6 6.6227 5.0630 8.1532 21 1 7.0706 6.0024 7.8646 22 6 7.1978 4.3002 9.1603 23 7 8.2887 4.7220 9.7639 24 14 6.4226 2.6758 9.6600 25 1 6.9997 1.5795 8.8412 26 1 6.6965 2.4177 11.0964 27 1 4.9555 2.7388 9.4394 28 6 3.3755 5.1735 6.2788 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.9080 3.1740 -0.7241 33 1 4.9416 1.8807 -1.4092 34 1 4.9501 2.3010 1.2658 35 1 4.9136 0.6168 0.6465 36 1 3.9615 2.2615 3.5196 37 1 2.9814 4.9098 3.4702 38 1 1.8235 3.8999 4.3689 39 1 5.9499 4.1964 4.9681 40 1 5.0058 5.5769 4.2581 41 1 5.0848 3.7809 7.7850 42 1 8.6908 4.1889 10.4674 43 1 2.8446 6.0050 5.8153 44 1 2.8813 4.8041 7.1774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086480922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:09 Heat of formation + Delta-G solvation = -29.792129 kcal Electronic energy + Delta-G solvation = -23466.870750 eV Core-core repulsion = 19999.685516 eV Total energy + Delta-G solvation = -3467.185234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85210 -39.19950 -38.32583 -34.91764 -34.17731 -33.39625 -32.55356 -30.70226 -28.89805 -27.62203 -25.25252 -24.06728 -23.17386 -22.77619 -21.77352 -20.52371 -20.21177 -18.66580 -17.78635 -17.47805 -16.85321 -16.38373 -15.72327 -15.59430 -15.15950 -14.89034 -14.52093 -14.19542 -14.11883 -13.61856 -13.60814 -13.38833 -12.94900 -12.69249 -12.58602 -12.13016 -12.01476 -11.72100 -11.59842 -11.51690 -11.42283 -11.36096 -10.97941 -10.58844 -10.41498 -10.21145 -10.05910 -9.98075 -9.76411 -9.67870 -9.56062 -9.17934 -8.97673 -7.36862 -5.85429 -3.22010 1.82957 2.38102 2.94053 3.29527 3.31716 3.38405 3.69303 4.08069 4.26692 4.41819 4.50246 4.62023 4.76041 4.84816 4.86524 4.90074 4.93069 5.02476 5.10948 5.32129 5.35971 5.36780 5.41270 5.42998 5.47441 5.55041 5.67692 5.69876 5.77974 5.84310 6.05336 6.16605 6.21880 6.24892 6.38174 6.41617 6.54490 6.55598 6.66338 6.81876 7.30398 7.92216 7.99449 8.34177 9.11712 9.83857 10.02881 11.32631 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.002861 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.079429 B = 9784.108399 C = 9896.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.159 4.159 3 C 0.113 3.887 4 H 0.098 0.902 5 O -0.367 6.367 6 C 0.046 3.954 7 C -0.146 4.146 8 C -0.141 4.141 9 H 0.113 0.887 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.721 5.721 13 C 0.130 3.870 14 C -0.124 4.124 15 H 0.089 0.911 16 C -0.166 4.166 17 C 0.173 3.827 18 H 0.071 0.929 19 N -0.730 5.730 20 C -0.248 4.248 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.931 5.931 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.149 4.149 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.403 0.597 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -8.429 -19.257 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.055 3.945 4 H 0.116 0.884 5 O -0.287 6.287 6 C -0.031 4.031 7 C -0.184 4.184 8 C -0.163 4.163 9 H 0.131 0.869 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.372 5.372 13 C 0.007 3.993 14 C -0.143 4.143 15 H 0.108 0.892 16 C -0.207 4.207 17 C 0.061 3.939 18 H 0.089 0.911 19 N -0.370 5.370 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.578 5.578 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.189 4.189 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.195 0.805 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.548 -7.834 -19.576 24.536 hybrid contribution -0.008 -1.551 0.897 1.791 sum -12.556 -9.385 -18.679 24.385 Atomic orbital electron populations 1.23966 0.95786 1.02395 0.98281 1.22849 0.95892 0.97434 1.01506 1.21869 0.92155 0.97110 0.83353 0.88441 1.88913 1.30574 1.76261 1.32907 1.23573 0.88362 0.96423 0.94714 1.23191 0.94624 1.03462 0.97109 1.22690 0.97081 0.98640 0.97861 0.86857 1.20262 0.82031 0.85936 0.81271 1.90682 1.30247 1.49766 1.71032 1.46049 1.37396 1.30535 1.23228 1.21503 0.98759 0.87929 0.91096 1.22759 0.97049 0.99420 0.95024 0.89234 1.23859 0.96250 0.99789 1.00818 1.20997 0.90229 0.95356 0.87308 0.91055 1.42517 1.30566 1.23026 1.40890 1.19112 0.99920 1.05456 1.13271 0.89014 1.24687 0.97336 0.98458 0.98533 1.69695 1.21385 1.39048 1.27715 0.86565 0.78863 0.85091 0.78084 1.21053 1.21605 1.20346 1.23468 0.99439 0.97629 0.98319 0.87815 0.88081 0.86811 0.91843 0.88395 0.89294 0.89123 0.76291 0.91309 0.91710 0.91294 0.90927 0.80531 0.92940 0.89986 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.16 -1.43 8.95 -36.03 -0.32 -1.76 16 3 C 0.11 1.18 3.40 -27.31 -0.09 1.09 16 4 H 0.10 1.22 6.10 -51.93 -0.32 0.90 16 5 O -0.37 -4.10 11.17 -35.23 -0.39 -4.50 16 6 C 0.05 0.40 7.72 38.21 0.29 0.69 16 7 C -0.15 -1.09 6.70 -24.73 -0.17 -1.26 16 8 C -0.14 -1.27 3.06 -90.25 -0.28 -1.55 16 9 H 0.11 0.84 7.69 -51.93 -0.40 0.44 16 10 C 0.52 6.00 7.05 -10.98 -0.08 5.92 16 11 O -0.54 -8.16 15.25 5.56 0.08 -8.07 16 12 N -0.72 -7.54 5.41 -60.29 -0.33 -7.87 16 13 C 0.13 1.53 5.51 -4.04 -0.02 1.51 16 14 C -0.12 -1.61 3.63 -89.81 -0.33 -1.93 16 15 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.17 -2.46 7.43 -25.92 -0.19 -2.65 16 17 C 0.17 3.09 4.56 -67.12 -0.31 2.78 16 18 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 19 N -0.73 -16.37 5.11 -52.64 -0.27 -16.64 16 20 C -0.25 -6.76 10.45 -15.06 -0.16 -6.91 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -28.60 13.97 55.49 0.78 -27.82 16 24 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 28 C -0.15 -2.12 7.39 -25.92 -0.19 -2.32 16 29 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.10 0.87 7.85 -52.48 -0.41 0.45 16 31 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.63 7.74 -51.93 -0.40 0.23 16 35 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.40 3.49 8.47 -40.82 -0.35 3.14 16 37 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 41 H 0.36 7.94 5.76 -40.82 -0.24 7.71 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -32.49 360.09 -8.10 -40.59 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.17 Total: 9.54 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.52 Total: -7.28 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.18 Total: -52.33 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.31 Total: -12.57 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.49 -8.10 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086480922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.794 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds