Wall clock time and date at job start Tue Mar 31 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50696 * 119.99930 * 2 1 4 4 H 1.09002 * 109.87329 * 359.30261 * 3 2 1 5 5 O 1.43741 * 110.00334 * 238.21312 * 3 2 1 6 6 C 1.44382 * 106.98021 * 213.99568 * 5 3 2 7 7 C 1.54993 * 103.48614 * 40.05788 * 6 5 3 8 8 C 1.54104 * 109.87794 * 120.31108 * 3 2 1 9 9 H 1.09002 * 110.48549 * 2.79181 * 8 3 2 10 10 C 1.50697 * 110.48497 * 240.28035 * 8 3 2 11 11 O 1.21280 * 120.00360 * 359.97438 * 10 8 3 12 12 N 1.34783 * 119.99990 * 179.97438 * 10 8 3 13 13 C 1.46499 * 120.00014 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46929 * 180.02562 * 13 12 10 15 15 H 1.08998 * 112.84818 * 316.19545 * 14 13 12 16 16 C 1.53780 * 113.61408 * 87.50372 * 14 13 12 17 17 C 1.53781 * 87.08033 * 139.98137 * 16 14 13 18 18 H 1.08994 * 113.69226 * 220.00550 * 17 16 14 19 19 N 1.46500 * 113.61544 * 89.11079 * 17 16 14 20 20 C 1.36945 * 119.99625 * 107.50138 * 19 17 16 21 21 H 1.07994 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99894 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99970 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00085 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46652 * 90.00122 * 24 22 20 26 26 H 1.48495 * 109.47384 * 210.00179 * 24 22 20 27 27 H 1.48497 * 109.47408 * 330.00253 * 24 22 20 28 28 C 1.53781 * 113.61190 * 185.00133 * 14 13 12 29 29 H 1.07995 * 120.00090 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99549 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99454 * 180.02562 * 2 1 3 32 32 H 1.09000 * 110.61613 * 281.56153 * 6 5 3 33 33 H 1.08993 * 110.75634 * 158.62332 * 6 5 3 34 34 H 1.09004 * 110.90886 * 204.77674 * 7 6 5 35 35 H 1.09008 * 110.90665 * 81.17800 * 7 6 5 36 36 H 0.97002 * 119.99726 * 359.97438 * 12 10 8 37 37 H 1.08997 * 109.47389 * 299.99939 * 13 12 10 38 38 H 1.09005 * 109.46906 * 60.00050 * 13 12 10 39 39 H 1.08998 * 113.60980 * 254.52685 * 16 14 13 40 40 H 1.08994 * 113.61377 * 25.43006 * 16 14 13 41 41 H 0.96998 * 120.00319 * 287.50445 * 19 17 16 42 42 H 0.97001 * 120.00227 * 180.02562 * 23 22 20 43 43 H 1.08998 * 113.61631 * 334.57033 * 28 14 13 44 44 H 1.09006 * 113.61256 * 105.38859 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3611 2.1385 -0.0125 5 8 2.9256 1.3752 -1.1481 6 6 4.1060 2.1024 -0.7453 7 6 4.3880 1.5711 0.6831 8 6 2.9590 1.3932 1.2511 9 1 2.8898 0.4754 1.8351 10 6 2.5739 2.5825 2.0926 11 8 1.6675 3.3070 1.7398 12 7 3.2368 2.8411 3.2373 13 6 2.8628 3.9977 4.0550 14 6 3.7648 4.0628 5.2891 15 1 3.9097 3.0901 5.7593 16 6 5.0727 4.8373 5.0560 17 6 4.8808 5.4292 6.4623 18 1 5.1389 6.4859 6.5317 19 7 5.4873 4.6244 7.5256 20 6 6.6227 5.0630 8.1532 21 1 7.0706 6.0024 7.8646 22 6 7.1978 4.3002 9.1603 23 7 8.2887 4.7220 9.7639 24 14 6.4226 2.6758 9.6600 25 1 6.9997 1.5795 8.8412 26 1 6.6965 2.4177 11.0964 27 1 4.9555 2.7388 9.4394 28 6 3.3755 5.1735 6.2788 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.9080 3.1740 -0.7241 33 1 4.9416 1.8807 -1.4092 34 1 4.9501 2.3010 1.2658 35 1 4.9136 0.6168 0.6465 36 1 3.9615 2.2615 3.5196 37 1 2.9814 4.9098 3.4702 38 1 1.8235 3.8999 4.3689 39 1 5.9499 4.1964 4.9681 40 1 5.0058 5.5769 4.2581 41 1 5.0848 3.7809 7.7850 42 1 8.6908 4.1889 10.4674 43 1 2.8446 6.0050 5.8153 44 1 2.8813 4.8041 7.1774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086480922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:08 Heat of formation + Delta-G solvation = -52.588818 kcal Electronic energy + Delta-G solvation = -23467.859289 eV Core-core repulsion = 19999.685516 eV Total energy + Delta-G solvation = -3468.173772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68028 -40.33119 -39.31842 -36.12581 -35.05798 -34.83876 -33.41279 -32.55533 -29.64495 -28.73313 -26.46447 -25.57474 -24.36811 -23.50704 -22.98194 -21.35375 -20.96920 -20.09683 -19.55345 -18.41487 -17.55572 -17.29670 -16.78298 -16.54445 -16.26103 -16.12407 -15.91475 -15.27284 -15.10930 -14.81894 -14.64212 -14.54632 -14.19217 -14.06102 -13.43235 -13.35471 -13.12444 -13.01891 -12.73142 -12.63699 -12.34590 -12.24611 -12.15976 -12.03591 -11.89356 -11.65450 -11.51612 -11.10402 -10.93142 -10.83616 -10.72915 -10.39899 -10.11273 -9.29759 -8.02552 -5.36457 1.18226 1.37795 1.41815 1.49344 1.50801 2.08987 2.48401 3.00596 3.27893 3.40308 3.51006 3.58008 3.63795 3.73878 3.84788 4.00128 4.01291 4.10452 4.24445 4.27203 4.30107 4.36937 4.45605 4.69282 4.75545 4.77321 4.77596 4.83606 4.92668 4.96840 4.99181 5.01902 5.08246 5.25348 5.31835 5.47670 5.54229 5.58299 5.74238 5.80923 5.84804 6.22703 6.47419 7.08021 7.14530 7.84700 8.03388 9.18971 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.002861 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.079429 B = 9784.108399 C = 9896.586810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.169 4.169 3 C 0.109 3.891 4 H 0.069 0.931 5 O -0.386 6.386 6 C 0.037 3.963 7 C -0.138 4.138 8 C -0.135 4.135 9 H 0.136 0.864 10 C 0.519 3.481 11 O -0.580 6.580 12 N -0.713 5.713 13 C 0.138 3.862 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.153 4.153 17 C 0.145 3.855 18 H 0.055 0.945 19 N -0.733 5.733 20 C -0.233 4.233 21 H 0.056 0.944 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.299 1.299 27 H -0.251 1.251 28 C -0.135 4.135 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.414 0.586 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.105 0.895 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 -10.706 -20.184 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.051 3.949 4 H 0.087 0.913 5 O -0.305 6.305 6 C -0.039 4.039 7 C -0.175 4.175 8 C -0.156 4.156 9 H 0.154 0.846 10 C 0.306 3.694 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.015 3.985 14 C -0.123 4.123 15 H 0.110 0.890 16 C -0.193 4.193 17 C 0.035 3.965 18 H 0.074 0.926 19 N -0.375 5.375 20 C -0.364 4.364 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.635 5.635 24 Si 0.784 3.216 25 H -0.200 1.200 26 H -0.226 1.226 27 H -0.175 1.175 28 C -0.174 4.174 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.881 -10.110 -20.549 26.780 hybrid contribution 0.392 -0.676 1.092 1.343 sum -13.489 -10.786 -19.457 26.016 Atomic orbital electron populations 1.24133 0.95803 1.02953 0.97480 1.22948 0.96149 0.97321 1.02249 1.21819 0.92110 0.96981 0.83950 0.91331 1.88893 1.31463 1.76484 1.33707 1.23752 0.88216 0.95682 0.96210 1.23217 0.93715 1.04690 0.95920 1.22692 0.97631 0.98218 0.97060 0.84597 1.20687 0.81292 0.86124 0.81322 1.90673 1.32083 1.51302 1.71978 1.45954 1.37445 1.30223 1.22742 1.21321 0.98321 0.88367 0.90534 1.22574 0.95696 0.98934 0.95058 0.88957 1.23695 0.96878 0.99938 0.98825 1.21342 0.93064 0.94245 0.87829 0.92628 1.42427 1.29475 1.23732 1.41890 1.19060 1.00803 1.03787 1.12710 0.92644 1.25539 0.98187 1.02879 0.99110 1.69889 1.23650 1.41036 1.28947 0.85387 0.79328 0.79998 0.76921 1.20041 1.22581 1.17513 1.23370 0.96396 0.98868 0.98798 0.85680 0.89144 0.85096 0.93115 0.86397 0.88737 0.86906 0.74929 0.91627 0.91739 0.92558 0.89150 0.79928 0.93341 0.87712 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 14.32 67.77 0.97 -1.56 16 2 C -0.17 -2.77 8.95 25.63 0.23 -2.54 16 3 C 0.11 2.19 3.40 30.22 0.10 2.29 16 4 H 0.07 1.76 6.10 -2.39 -0.01 1.75 16 5 O -0.39 -8.24 11.17 -148.98 -1.66 -9.91 16 6 C 0.04 0.59 7.72 72.66 0.56 1.15 16 7 C -0.14 -1.68 6.70 31.89 0.21 -1.46 16 8 C -0.13 -2.13 3.06 -10.55 -0.03 -2.16 16 9 H 0.14 1.55 7.69 -2.39 -0.02 1.53 16 10 C 0.52 11.07 7.05 87.65 0.62 11.68 16 11 O -0.58 -17.20 15.25 -3.03 -0.05 -17.25 16 12 N -0.71 -12.95 5.41 -463.05 -2.50 -15.45 16 13 C 0.14 2.86 5.51 86.38 0.48 3.34 16 14 C -0.10 -2.38 3.63 -10.27 -0.04 -2.42 16 15 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.15 -4.20 7.43 31.12 0.23 -3.97 16 17 C 0.14 5.00 4.56 45.52 0.21 5.20 16 18 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 19 N -0.73 -32.17 5.11 -320.45 -1.64 -33.81 16 20 C -0.23 -12.87 10.45 84.03 0.88 -11.99 16 21 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.98 -62.18 13.97 21.65 0.30 -61.88 16 24 Si 0.96 43.70 27.74 68.60 1.90 45.60 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 28 C -0.14 -3.49 7.39 31.12 0.23 -3.26 16 29 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.09 1.54 7.85 -2.91 -0.02 1.52 16 31 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.06 7.74 -2.38 -0.02 1.05 16 35 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.41 5.73 8.47 -92.71 -0.79 4.94 16 37 H 0.07 1.45 7.84 -2.39 -0.02 1.43 16 38 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 2.18 7.89 -2.39 -0.02 2.16 16 41 H 0.37 15.24 5.76 -92.71 -0.53 14.70 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.10 2.26 8.10 -2.39 -0.02 2.24 16 44 H 0.07 1.77 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -72.54 360.09 1.08 -71.46 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.38 Total: 30.25 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.12 Total: -9.01 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.84 Total: -111.14 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.71 Total: -27.15 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.90 Total: 45.60 kcal Total: -72.54 1.08 -71.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086480922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.868 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds