Wall clock time and date at job start Tue Mar 31 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.50694 * 109.47047 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00279 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99810 * 180.02562 * 4 3 2 7 7 C 1.48159 * 127.83894 * 359.67776 * 6 4 3 8 8 C 1.54781 * 104.35443 * 140.29661 * 7 6 4 9 9 H 1.09004 * 111.10152 * 264.48049 * 8 7 6 10 10 C 1.54164 * 104.96850 * 24.43139 * 8 7 6 11 11 H 1.09005 * 110.87266 * 239.67617 * 10 8 7 12 12 C 1.48147 * 127.83696 * 180.02562 * 6 4 3 13 13 C 1.53027 * 109.71416 * 116.35844 * 10 8 7 14 14 H 1.09007 * 109.63814 * 179.84308 * 13 10 8 15 15 C 1.53066 * 109.16060 * 300.59425 * 13 10 8 16 16 C 1.54105 * 109.66792 * 59.89687 * 15 13 10 17 17 C 1.53204 * 109.37516 * 141.77316 * 8 7 6 18 18 H 1.09000 * 110.52116 * 67.81454 * 17 8 7 19 19 N 1.47647 * 108.07462 * 188.88060 * 17 8 7 20 20 C 1.36933 * 122.04116 * 238.57983 * 19 17 8 21 21 H 1.08002 * 119.99831 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00264 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99766 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99971 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46884 * 90.00352 * 24 22 20 26 26 H 1.48500 * 109.46761 * 209.99708 * 24 22 20 27 27 H 1.48493 * 109.47162 * 330.00072 * 24 22 20 28 28 C 1.47584 * 115.91883 * 58.60371 * 19 17 8 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 32 32 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 33 33 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 34 34 H 1.08999 * 110.41958 * 259.10691 * 7 6 4 35 35 H 1.08995 * 110.42109 * 21.57440 * 7 6 4 36 36 H 1.09002 * 110.40468 * 338.24385 * 12 6 4 37 37 H 1.08999 * 110.40573 * 100.66380 * 12 6 4 38 38 H 1.08998 * 109.38165 * 179.43215 * 15 13 10 39 39 H 1.08999 * 109.38489 * 299.21749 * 15 13 10 40 40 H 1.09002 * 109.22380 * 240.22783 * 16 15 13 41 41 H 1.08997 * 109.79091 * 120.25077 * 16 15 13 42 42 H 0.96999 * 120.00305 * 179.97438 * 23 22 20 43 43 H 1.08994 * 109.99375 * 119.61656 * 28 19 17 44 44 H 1.09001 * 109.99445 * 240.89883 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2966 -0.0002 7 6 3.8278 3.7086 -0.0058 8 6 4.8069 4.4262 0.9545 9 1 4.3892 4.4989 1.9587 10 6 6.0793 3.5558 0.9494 11 1 6.3057 3.1930 1.9521 12 6 5.7555 2.3821 -0.0012 13 6 7.2490 4.3547 0.3705 14 1 8.1486 3.7391 0.3700 15 6 6.9047 4.7866 -1.0571 16 6 5.6369 5.6626 -1.0424 17 6 5.1371 5.8153 0.3990 18 1 4.2581 6.4590 0.4325 19 7 6.2285 6.3866 1.2130 20 6 6.0897 7.5714 1.8852 21 1 5.1601 8.1185 1.8291 22 6 7.1441 8.0701 2.6380 23 7 8.2774 7.4042 2.7051 24 14 6.9549 9.6867 3.5545 25 1 6.4310 9.4238 4.9190 26 1 8.2761 10.3577 3.6524 27 1 6.0074 10.5637 2.8209 28 6 7.4783 5.6030 1.2573 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 3.9008 4.1270 -1.0096 35 1 2.8057 3.7843 0.3653 36 1 6.1899 1.4564 0.3763 37 1 6.1233 2.5936 -1.0053 38 1 7.7316 5.3648 -1.4694 39 1 6.7392 3.9024 -1.6726 40 1 4.8644 5.1859 -1.6459 41 1 5.8631 6.6461 -1.4543 42 1 9.0143 7.7527 3.2308 43 1 8.3028 6.1937 0.8584 44 1 7.6955 5.3055 2.2832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087320766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:52 Heat of formation + Delta-G solvation = -52.962305 kcal Electronic energy + Delta-G solvation = -25167.136094 eV Core-core repulsion = 21698.946126 eV Total energy + Delta-G solvation = -3468.189968 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10469 -40.31848 -38.37556 -37.11252 -34.98844 -33.24286 -31.84608 -31.61993 -29.97674 -28.56236 -27.04751 -26.76532 -24.89176 -23.66696 -22.43638 -22.17946 -20.58233 -19.15089 -18.39484 -17.85166 -17.51644 -17.16485 -16.96935 -16.70993 -16.44570 -16.06525 -15.67826 -15.28243 -15.11011 -14.30018 -14.15814 -14.12396 -13.77641 -13.68247 -13.28685 -13.11276 -12.98170 -12.86872 -12.80380 -12.52564 -12.39004 -12.29786 -12.15051 -12.04963 -11.86575 -11.72391 -11.14437 -10.91738 -10.77581 -10.74502 -10.67772 -10.47683 -9.70666 -8.79978 -7.71641 -5.09619 1.48502 1.48820 1.52598 1.57347 1.68377 2.54016 2.99504 3.40074 3.47820 3.54273 3.74024 3.85759 3.88329 4.15650 4.17660 4.23724 4.26208 4.30495 4.35193 4.45709 4.53657 4.55370 4.60174 4.64206 4.70410 4.78581 4.87157 4.89033 4.92679 5.03042 5.08006 5.16145 5.28968 5.41411 5.46943 5.55016 5.59255 5.66315 5.81682 5.93820 6.08019 6.32493 6.53739 7.09327 7.21967 7.94035 8.44111 9.31256 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.003984 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.586243 B = 7026.536708 C = 7499.777839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.052 3.948 4 C 0.526 3.474 5 O -0.583 6.583 6 N -0.617 5.617 7 C 0.105 3.895 8 C -0.103 4.103 9 H 0.063 0.937 10 C -0.077 4.077 11 H 0.053 0.947 12 C 0.111 3.889 13 C -0.102 4.102 14 H 0.071 0.929 15 C -0.102 4.102 16 C -0.128 4.128 17 C 0.173 3.827 18 H 0.076 0.924 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.969 3.031 25 H -0.292 1.292 26 H -0.302 1.302 27 H -0.267 1.267 28 C 0.216 3.784 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.241 0.759 43 H 0.011 0.989 44 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 -8.218 -9.334 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.027 4.027 4 C 0.316 3.684 5 O -0.462 6.462 6 N -0.351 5.351 7 C -0.017 4.017 8 C -0.124 4.124 9 H 0.081 0.919 10 C -0.097 4.097 11 H 0.072 0.928 12 C -0.011 4.011 13 C -0.122 4.122 14 H 0.089 0.911 15 C -0.139 4.139 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.094 0.906 19 N -0.340 5.340 20 C -0.367 4.367 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.798 3.202 25 H -0.219 1.219 26 H -0.229 1.229 27 H -0.192 1.192 28 C 0.091 3.909 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.029 0.971 44 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -14.150 -8.967 -9.241 19.132 hybrid contribution 0.696 1.222 1.255 1.886 sum -13.453 -7.744 -7.986 17.457 Atomic orbital electron populations 1.23048 0.78143 1.04206 1.01717 1.87956 1.22275 1.26635 1.95797 1.22310 0.88476 0.86734 1.05185 1.20595 0.89904 0.82383 0.75554 1.90694 1.75780 1.27822 1.51936 1.48997 1.07569 1.06486 1.72028 1.23028 0.99128 0.78231 1.01336 1.22610 0.94666 0.95975 0.99127 0.91856 1.21835 0.95710 0.94355 0.97776 0.92803 1.22606 0.79991 0.97777 1.00747 1.21860 0.97181 0.96693 0.96434 0.91077 1.21656 0.97977 0.99462 0.94786 1.22313 0.97808 0.99321 0.97188 1.20784 0.90578 0.91826 0.90171 0.90559 1.44854 1.11288 1.22207 1.55678 1.19705 0.98446 0.97366 1.21137 0.89828 1.25555 0.96286 1.02050 1.02328 1.70272 1.04232 1.40013 1.45812 0.85210 0.76247 0.80122 0.78572 1.21900 1.22884 1.19200 1.20873 0.87044 0.88386 0.94565 0.88649 0.91932 0.92419 0.86927 0.87909 0.87491 0.87599 0.91976 0.88500 0.93541 0.89711 0.88672 0.93416 0.94957 0.97124 0.97660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.50 10.24 -129.94 -1.33 -10.83 16 3 C 0.05 0.97 5.39 71.23 0.38 1.36 16 4 C 0.53 14.61 7.99 87.66 0.70 15.31 16 5 O -0.58 -22.16 16.77 15.98 0.27 -21.89 16 6 N -0.62 -15.30 3.31 -807.00 -2.67 -17.97 16 7 C 0.10 2.07 6.24 86.67 0.54 2.61 16 8 C -0.10 -3.00 3.31 -9.72 -0.03 -3.03 16 9 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 10 C -0.08 -2.45 3.12 -9.89 -0.03 -2.48 16 11 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 12 C 0.11 3.02 6.34 86.56 0.55 3.57 16 13 C -0.10 -3.57 2.88 -10.14 -0.03 -3.60 16 14 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 15 C -0.10 -2.95 5.41 30.99 0.17 -2.78 16 16 C -0.13 -3.58 5.58 31.08 0.17 -3.40 16 17 C 0.17 5.82 3.18 44.95 0.14 5.97 16 18 H 0.08 2.44 7.99 -2.39 -0.02 2.42 16 19 N -0.62 -28.77 2.88 -668.02 -1.93 -30.69 16 20 C -0.24 -12.43 9.99 84.04 0.84 -11.59 16 21 H 0.08 4.13 7.79 -2.91 -0.02 4.11 16 22 C -0.07 -3.87 5.47 84.86 0.46 -3.41 16 23 N -0.95 -56.52 9.76 21.65 0.21 -56.31 16 24 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.22 10.32 4.45 86.80 0.39 10.71 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.44 7.96 -2.39 -0.02 1.42 16 34 H 0.11 1.71 5.25 -2.39 -0.01 1.70 16 35 H 0.11 1.46 7.30 -2.39 -0.02 1.44 16 36 H 0.06 1.88 7.88 -2.39 -0.02 1.86 16 37 H 0.10 2.33 5.30 -2.39 -0.01 2.32 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.95 5.78 -2.39 -0.01 1.94 16 40 H 0.10 1.89 5.68 -2.39 -0.01 1.88 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.01 0.58 7.21 -2.39 -0.02 0.57 16 44 H 0.01 0.29 7.24 -2.39 -0.02 0.27 16 Total: -1.00 -74.32 331.17 3.07 -71.24 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.99 Total: 8.66 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.50 Total: 10.79 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.39 Total: -104.97 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.06 Total: -32.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.32 3.07 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087320766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds