Wall clock time and date at job start Tue Mar 31 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99995 * 2 1 4 4 C 1.50701 * 109.47076 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99874 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99939 * 180.02562 * 4 3 2 7 7 C 1.49486 * 125.94251 * 179.97438 * 6 4 3 8 8 C 1.52845 * 103.10155 * 154.35581 * 7 6 4 9 9 H 1.09003 * 111.16299 * 284.80419 * 8 7 6 10 10 C 1.56096 * 97.91243 * 42.49138 * 8 7 6 11 11 H 1.09001 * 100.03711 * 60.04985 * 10 8 7 12 12 C 1.47949 * 103.97261 * 314.07402 * 10 8 7 13 13 C 1.49205 * 108.83525 * 168.37090 * 10 8 7 14 14 H 1.08998 * 114.52405 * 155.18770 * 13 10 8 15 15 C 1.55149 * 108.16905 * 26.89400 * 13 10 8 16 16 C 1.54114 * 108.68633 * 289.00514 * 15 13 10 17 17 C 1.51791 * 119.79263 * 153.02038 * 8 7 6 18 18 H 1.08993 * 112.84886 * 47.65191 * 17 8 7 19 19 C 1.54143 * 109.73669 * 281.61038 * 17 8 7 20 20 N 1.48665 * 106.45487 * 287.66043 * 19 17 8 21 21 C 1.36935 * 123.84874 * 214.61107 * 20 19 17 22 22 H 1.07995 * 120.00448 * 160.66325 * 21 20 19 23 23 C 1.38818 * 119.99816 * 340.65705 * 21 20 19 24 24 N 1.31618 * 119.99709 * 349.91056 * 23 21 20 25 25 Si 1.86798 * 119.99883 * 169.91052 * 23 21 20 26 26 H 1.48496 * 109.47326 * 90.00267 * 25 23 21 27 27 H 1.48497 * 109.47004 * 209.99819 * 25 23 21 28 28 H 1.48499 * 109.47151 * 329.99977 * 25 23 21 29 29 H 1.09005 * 109.47326 * 300.00089 * 1 2 3 30 30 H 1.09004 * 109.47510 * 59.99539 * 1 2 3 31 31 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46802 * 60.00515 * 3 2 1 33 33 H 1.09000 * 109.47796 * 300.00375 * 3 2 1 34 34 H 1.09002 * 110.68981 * 35.95527 * 7 6 4 35 35 H 1.08999 * 110.69486 * 272.76096 * 7 6 4 36 36 H 1.08996 * 110.36214 * 272.51586 * 12 10 8 37 37 H 1.08999 * 110.57662 * 150.04982 * 12 10 8 38 38 H 1.08994 * 109.60233 * 169.24882 * 15 13 10 39 39 H 1.09000 * 109.60325 * 48.76724 * 15 13 10 40 40 H 1.08995 * 109.89596 * 152.84521 * 16 15 13 41 41 H 1.08997 * 109.89853 * 273.89260 * 16 15 13 42 42 H 1.09002 * 109.99130 * 168.45162 * 19 17 8 43 43 H 1.09003 * 110.18075 * 46.98098 * 19 17 8 44 44 H 0.97002 * 120.00030 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0340 0.0915 0.0006 6 7 4.2764 2.2968 0.0013 7 6 5.7708 2.3337 0.0025 8 6 6.0846 3.6838 -0.6415 9 1 5.9224 3.6531 -1.7190 10 6 5.0011 4.5310 0.0967 11 1 5.3134 4.3801 1.1300 12 6 3.7766 3.7061 0.0015 13 6 5.2726 5.9778 -0.1466 14 1 4.3984 6.6230 -0.0599 15 6 6.0210 6.1089 -1.4993 16 6 7.4517 5.5623 -1.3270 17 6 7.3815 4.3970 -0.3044 18 1 8.2511 3.7422 -0.3590 19 6 7.2545 5.0871 1.0680 20 7 6.3541 6.2535 0.8712 21 6 6.4897 7.4426 1.5367 22 1 6.0261 8.3362 1.1458 23 6 7.2230 7.4993 2.7140 24 7 7.6194 6.3876 3.2966 25 14 7.6473 9.1534 3.4713 26 1 6.5725 9.5568 4.4133 27 1 8.9339 9.0464 4.2050 28 1 7.7727 10.1717 2.3978 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 6.1767 1.5180 -0.5959 35 1 6.1563 2.2941 1.0213 36 1 3.2449 3.9220 -0.9251 37 1 3.1293 3.8807 0.8609 38 1 6.0633 7.1574 -1.7937 39 1 5.4990 5.5328 -2.2633 40 1 7.8261 5.1951 -2.2825 41 1 8.1061 6.3480 -0.9496 42 1 8.2339 5.4239 1.4078 43 1 6.8228 4.4000 1.7959 44 1 8.1315 6.4272 4.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087320768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:56 Heat of formation + Delta-G solvation = -1.821099 kcal Electronic energy + Delta-G solvation = -25149.100752 eV Core-core repulsion = 21683.128433 eV Total energy + Delta-G solvation = -3465.972319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18041 -39.26207 -37.47041 -35.91952 -33.15798 -31.25185 -30.77788 -29.69252 -28.86527 -27.58379 -26.03360 -25.55310 -23.36166 -21.80291 -21.05819 -20.52073 -19.39250 -17.34801 -17.14680 -16.99658 -16.50175 -16.26552 -15.60232 -15.22547 -14.96760 -14.61512 -14.27450 -14.20430 -13.73179 -13.26909 -13.15884 -12.49021 -12.43204 -12.19043 -12.03970 -11.77865 -11.64466 -11.41822 -11.26678 -11.11382 -10.95204 -10.83629 -10.60444 -10.39667 -10.19538 -10.04970 -9.97837 -9.66527 -9.54519 -9.28090 -9.20453 -8.53323 -8.49102 -6.79448 -5.79677 -3.16611 2.66393 2.70280 3.35252 3.42239 3.43313 3.80005 4.39005 4.44046 4.73065 4.85770 4.93591 4.99627 5.11194 5.12630 5.16978 5.30129 5.42842 5.43071 5.48530 5.58664 5.66055 5.71082 5.78564 5.85644 5.94814 6.05826 6.09995 6.22614 6.27465 6.31220 6.38182 6.43570 6.68456 6.73453 6.81968 6.87583 7.04065 7.09595 7.33996 7.56722 7.59162 7.74470 8.21975 8.24759 9.11604 9.72410 10.40113 11.30779 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.004091 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.626630 B = 6843.441055 C = 7229.776258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.529 3.471 5 O -0.530 6.530 6 N -0.623 5.623 7 C 0.120 3.880 8 C -0.098 4.098 9 H 0.078 0.922 10 C -0.162 4.162 11 H 0.092 0.908 12 C 0.133 3.867 13 C 0.189 3.811 14 H 0.080 0.920 15 C -0.123 4.123 16 C -0.092 4.092 17 C -0.108 4.108 18 H 0.074 0.926 19 C 0.184 3.816 20 N -0.600 5.600 21 C -0.234 4.234 22 H 0.071 0.929 23 C -0.003 4.003 24 N -0.914 5.914 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 -5.572 -8.863 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.032 4.032 4 C 0.317 3.683 5 O -0.406 6.406 6 N -0.359 5.359 7 C -0.001 4.001 8 C -0.117 4.117 9 H 0.096 0.904 10 C -0.182 4.182 11 H 0.110 0.890 12 C 0.011 3.989 13 C 0.083 3.917 14 H 0.098 0.902 15 C -0.162 4.162 16 C -0.130 4.130 17 C -0.128 4.128 18 H 0.092 0.908 19 C 0.060 3.940 20 N -0.326 5.326 21 C -0.363 4.363 22 H 0.088 0.912 23 C -0.200 4.200 24 N -0.560 5.560 25 Si 0.736 3.264 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.044 0.956 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.324 -6.373 -8.628 14.212 hybrid contribution -0.053 1.139 0.624 1.300 sum -9.377 -5.234 -8.004 13.393 Atomic orbital electron populations 1.22826 0.80540 1.03152 1.00131 1.88004 1.19647 1.25514 1.95430 1.22221 0.91755 0.86582 1.02604 1.19801 0.88203 0.83357 0.76977 1.90712 1.74565 1.25874 1.49455 1.49724 1.07538 1.05548 1.73124 1.22070 0.78428 0.98177 1.01427 1.22276 0.97329 0.92856 0.99215 0.90421 1.21701 0.93837 0.96989 1.05634 0.88982 1.20763 0.96884 0.80110 1.01173 1.20696 0.91497 0.89847 0.89685 0.90209 1.22632 0.96246 0.99718 0.97648 1.21913 0.97102 0.97622 0.96373 1.22130 0.94946 0.95781 0.99979 0.90802 1.21247 0.95708 0.87713 0.89359 1.46027 1.27385 1.12266 1.46888 1.19093 1.29735 0.85737 1.01777 0.91169 1.24941 1.02059 0.96807 0.96235 1.69944 1.41763 1.24938 1.19350 0.86235 0.77626 0.83488 0.79056 1.21607 1.21707 1.20649 0.93790 0.93869 0.89201 0.90218 0.90313 0.90646 0.90745 0.91768 0.91008 0.92821 0.93677 0.94170 0.91184 0.90411 0.95604 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.96 10.24 -55.14 -0.56 -5.52 16 3 C 0.05 0.58 5.65 36.01 0.20 0.78 16 4 C 0.53 8.44 7.95 -10.99 -0.09 8.36 16 5 O -0.53 -10.64 16.81 -14.35 -0.24 -10.88 16 6 N -0.62 -9.37 3.43 -171.66 -0.59 -9.96 16 7 C 0.12 1.89 6.47 -2.46 -0.02 1.87 16 8 C -0.10 -1.51 2.50 -89.65 -0.22 -1.73 16 9 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 10 C -0.16 -2.62 2.49 -93.28 -0.23 -2.85 16 11 H 0.09 1.84 4.44 -51.93 -0.23 1.61 16 12 C 0.13 1.77 6.40 -4.81 -0.03 1.74 16 13 C 0.19 3.40 4.61 -66.10 -0.30 3.09 16 14 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.12 -1.98 5.60 -25.01 -0.14 -2.12 16 16 C -0.09 -1.55 5.50 -24.99 -0.14 -1.69 16 17 C -0.11 -1.87 3.87 -89.48 -0.35 -2.21 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.18 4.04 3.97 -2.25 -0.01 4.03 16 20 N -0.60 -13.61 2.24 -160.46 -0.36 -13.96 16 21 C -0.23 -6.02 10.11 -15.06 -0.15 -6.17 16 22 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 23 C 0.00 -0.08 5.27 -17.43 -0.09 -0.17 16 24 N -0.91 -25.52 10.85 55.49 0.60 -24.92 16 25 Si 0.91 21.16 29.57 -169.99 -5.03 16.13 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.35 7.82 -51.93 -0.41 0.94 16 42 H 0.08 1.96 6.77 -51.93 -0.35 1.61 16 43 H 0.03 0.63 6.50 -51.93 -0.34 0.29 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -31.17 337.03 -8.63 -39.80 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.08 Total: -0.06 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.45 Total: 4.29 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.35 Total: -48.84 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.81 Total: -16.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.17 -8.63 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087320768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.984 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds