Wall clock time and date at job start Tue Mar 31 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99995 * 2 1 4 4 C 1.50701 * 109.47076 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99874 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99939 * 180.02562 * 4 3 2 7 7 C 1.49486 * 125.94251 * 179.97438 * 6 4 3 8 8 C 1.52845 * 103.10155 * 154.35581 * 7 6 4 9 9 H 1.09003 * 111.16299 * 284.80419 * 8 7 6 10 10 C 1.56096 * 97.91243 * 42.49138 * 8 7 6 11 11 H 1.09001 * 100.03711 * 60.04985 * 10 8 7 12 12 C 1.47949 * 103.97261 * 314.07402 * 10 8 7 13 13 C 1.49205 * 108.83525 * 168.37090 * 10 8 7 14 14 H 1.08998 * 114.52405 * 155.18770 * 13 10 8 15 15 C 1.55149 * 108.16905 * 26.89400 * 13 10 8 16 16 C 1.54114 * 108.68633 * 289.00514 * 15 13 10 17 17 C 1.51791 * 119.79263 * 153.02038 * 8 7 6 18 18 H 1.08993 * 112.84886 * 47.65191 * 17 8 7 19 19 C 1.54143 * 109.73669 * 281.61038 * 17 8 7 20 20 N 1.48665 * 106.45487 * 287.66043 * 19 17 8 21 21 C 1.36935 * 123.84874 * 214.61107 * 20 19 17 22 22 H 1.07995 * 120.00448 * 160.66325 * 21 20 19 23 23 C 1.38818 * 119.99816 * 340.65705 * 21 20 19 24 24 N 1.31618 * 119.99709 * 349.91056 * 23 21 20 25 25 Si 1.86798 * 119.99883 * 169.91052 * 23 21 20 26 26 H 1.48496 * 109.47326 * 90.00267 * 25 23 21 27 27 H 1.48497 * 109.47004 * 209.99819 * 25 23 21 28 28 H 1.48499 * 109.47151 * 329.99977 * 25 23 21 29 29 H 1.09005 * 109.47326 * 300.00089 * 1 2 3 30 30 H 1.09004 * 109.47510 * 59.99539 * 1 2 3 31 31 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46802 * 60.00515 * 3 2 1 33 33 H 1.09000 * 109.47796 * 300.00375 * 3 2 1 34 34 H 1.09002 * 110.68981 * 35.95527 * 7 6 4 35 35 H 1.08999 * 110.69486 * 272.76096 * 7 6 4 36 36 H 1.08996 * 110.36214 * 272.51586 * 12 10 8 37 37 H 1.08999 * 110.57662 * 150.04982 * 12 10 8 38 38 H 1.08994 * 109.60233 * 169.24882 * 15 13 10 39 39 H 1.09000 * 109.60325 * 48.76724 * 15 13 10 40 40 H 1.08995 * 109.89596 * 152.84521 * 16 15 13 41 41 H 1.08997 * 109.89853 * 273.89260 * 16 15 13 42 42 H 1.09002 * 109.99130 * 168.45162 * 19 17 8 43 43 H 1.09003 * 110.18075 * 46.98098 * 19 17 8 44 44 H 0.97002 * 120.00030 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0340 0.0915 0.0006 6 7 4.2764 2.2968 0.0013 7 6 5.7708 2.3337 0.0025 8 6 6.0846 3.6838 -0.6415 9 1 5.9224 3.6531 -1.7190 10 6 5.0011 4.5310 0.0967 11 1 5.3134 4.3801 1.1300 12 6 3.7766 3.7061 0.0015 13 6 5.2726 5.9778 -0.1466 14 1 4.3984 6.6230 -0.0599 15 6 6.0210 6.1089 -1.4993 16 6 7.4517 5.5623 -1.3270 17 6 7.3815 4.3970 -0.3044 18 1 8.2511 3.7422 -0.3590 19 6 7.2545 5.0871 1.0680 20 7 6.3541 6.2535 0.8712 21 6 6.4897 7.4426 1.5367 22 1 6.0261 8.3362 1.1458 23 6 7.2230 7.4993 2.7140 24 7 7.6194 6.3876 3.2966 25 14 7.6473 9.1534 3.4713 26 1 6.5725 9.5568 4.4133 27 1 8.9339 9.0464 4.2050 28 1 7.7727 10.1717 2.3978 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 6.1767 1.5180 -0.5959 35 1 6.1563 2.2941 1.0213 36 1 3.2449 3.9220 -0.9251 37 1 3.1293 3.8807 0.8609 38 1 6.0633 7.1574 -1.7937 39 1 5.4990 5.5328 -2.2633 40 1 7.8261 5.1951 -2.2825 41 1 8.1061 6.3480 -0.9496 42 1 8.2339 5.4239 1.4078 43 1 6.8228 4.4000 1.7959 44 1 8.1315 6.4272 4.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087320768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:55 Heat of formation + Delta-G solvation = -21.028951 kcal Electronic energy + Delta-G solvation = -25149.933667 eV Core-core repulsion = 21683.128433 eV Total energy + Delta-G solvation = -3466.805234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55479 -40.46993 -38.43172 -37.28611 -34.96584 -32.74994 -32.03518 -31.40299 -29.96290 -28.75003 -27.41116 -26.70006 -24.72905 -23.52479 -22.42796 -21.89623 -20.56277 -18.95361 -18.40946 -18.26535 -17.71719 -17.23349 -16.84948 -16.75994 -16.30286 -15.96918 -15.78037 -15.58673 -14.90637 -14.53617 -14.35610 -14.03099 -13.66942 -13.58026 -13.18256 -13.10171 -12.94095 -12.86559 -12.68097 -12.57285 -12.43983 -12.32165 -12.12218 -12.07771 -11.86939 -11.75054 -11.11941 -10.91714 -10.83623 -10.75416 -10.63069 -10.34987 -9.75172 -8.68023 -7.80417 -5.17679 1.47032 1.48544 1.51097 1.56735 1.59489 2.51707 2.90356 3.27345 3.32996 3.43920 3.61688 3.73339 3.93103 4.15015 4.17354 4.22521 4.31090 4.34278 4.42396 4.50479 4.53085 4.55150 4.59479 4.63916 4.75498 4.82289 4.87928 4.89690 4.93042 4.98284 5.04865 5.10877 5.29409 5.35534 5.45259 5.55820 5.58474 5.72057 5.78324 5.83535 6.05428 6.29642 6.44014 7.06038 7.13628 7.81266 8.47748 9.27983 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.004091 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.626630 B = 6843.441055 C = 7229.776258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.054 3.946 4 C 0.522 3.478 5 O -0.582 6.582 6 N -0.621 5.621 7 C 0.119 3.881 8 C -0.083 4.083 9 H 0.106 0.894 10 C -0.145 4.145 11 H 0.046 0.954 12 C 0.138 3.862 13 C 0.185 3.815 14 H 0.090 0.910 15 C -0.115 4.115 16 C -0.089 4.089 17 C -0.101 4.101 18 H 0.083 0.917 19 C 0.197 3.803 20 N -0.618 5.618 21 C -0.232 4.232 22 H 0.076 0.924 23 C -0.062 4.062 24 N -0.947 5.947 25 Si 0.964 3.036 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.033 0.967 43 H -0.008 1.008 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -4.962 -11.618 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.025 4.025 4 C 0.312 3.688 5 O -0.462 6.462 6 N -0.356 5.356 7 C -0.002 4.002 8 C -0.102 4.102 9 H 0.124 0.876 10 C -0.164 4.164 11 H 0.065 0.935 12 C 0.017 3.983 13 C 0.081 3.919 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.127 4.127 17 C -0.121 4.121 18 H 0.101 0.899 19 C 0.073 3.927 20 N -0.344 5.344 21 C -0.362 4.362 22 H 0.094 0.906 23 C -0.256 4.256 24 N -0.596 5.596 25 Si 0.794 3.206 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.010 0.990 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.868 -5.726 -11.421 17.438 hybrid contribution 0.698 0.941 1.477 1.885 sum -11.170 -4.786 -9.944 15.702 Atomic orbital electron populations 1.23052 0.78117 1.04236 1.01718 1.87954 1.22316 1.26587 1.95796 1.22298 0.88373 0.86706 1.05151 1.20655 0.90055 0.82499 0.75628 1.90684 1.75822 1.27786 1.51902 1.49765 1.06985 1.06382 1.72496 1.21946 0.79635 0.98559 1.00096 1.22151 0.95594 0.91987 1.00419 0.87602 1.21516 0.95807 0.96376 1.02747 0.93528 1.20852 0.95531 0.78038 1.03905 1.20944 0.90879 0.90927 0.89193 0.89211 1.22541 0.95456 1.00443 0.96933 1.21877 0.97391 0.96210 0.97217 1.21999 0.96758 0.96351 0.97020 0.89888 1.20887 0.93069 0.87315 0.91472 1.46285 1.29406 1.11469 1.47195 1.19463 1.28221 0.87224 1.01334 0.90605 1.25634 1.03173 0.99441 0.97337 1.70146 1.43207 1.26700 1.19552 0.85298 0.76606 0.80454 0.78274 1.21565 1.22843 1.19449 0.92487 0.91876 0.88565 0.88117 0.86832 0.90452 0.93329 0.87544 0.89876 0.92827 0.89940 0.90911 0.94517 0.94857 0.98988 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -10.11 10.24 -129.94 -1.33 -11.44 16 3 C 0.05 1.11 5.65 71.24 0.40 1.51 16 4 C 0.52 15.76 7.95 87.66 0.70 16.46 16 5 O -0.58 -23.34 16.81 16.01 0.27 -23.07 16 6 N -0.62 -17.39 3.43 -815.41 -2.80 -20.18 16 7 C 0.12 3.69 6.47 85.75 0.55 4.25 16 8 C -0.08 -2.37 2.50 -10.17 -0.03 -2.39 16 9 H 0.11 2.57 6.87 -2.39 -0.02 2.55 16 10 C -0.14 -4.38 2.49 -12.52 -0.03 -4.41 16 11 H 0.05 1.88 4.44 -2.39 -0.01 1.87 16 12 C 0.14 3.15 6.40 84.20 0.54 3.69 16 13 C 0.19 6.25 4.61 43.62 0.20 6.45 16 14 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 15 C -0.11 -3.27 5.60 31.71 0.18 -3.09 16 16 C -0.09 -2.80 5.50 31.72 0.17 -2.63 16 17 C -0.10 -3.45 3.87 -10.05 -0.04 -3.49 16 18 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 19 C 0.20 9.09 3.97 86.35 0.34 9.43 16 20 N -0.62 -28.36 2.24 -661.57 -1.48 -29.84 16 21 C -0.23 -12.11 10.11 84.04 0.85 -11.26 16 22 H 0.08 3.78 7.85 -2.91 -0.02 3.76 16 23 C -0.06 -3.42 5.27 84.86 0.45 -2.97 16 24 N -0.95 -55.87 10.85 21.65 0.23 -55.64 16 25 Si 0.96 44.64 29.57 68.60 2.03 46.67 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.36 8.07 -2.39 -0.02 2.35 16 35 H 0.05 1.74 7.85 -2.39 -0.02 1.72 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.81 7.17 -2.39 -0.02 1.79 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 42 H 0.03 1.80 6.77 -2.39 -0.02 1.78 16 43 H -0.01 -0.40 6.50 -2.39 -0.02 -0.41 16 44 H 0.24 14.19 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -73.04 337.03 3.45 -69.59 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.98 Total: 10.75 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.54 Total: 13.16 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -4.04 Total: -105.66 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.06 Total: -34.51 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.04 3.45 -69.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087320768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.561 kcal (2) G-P(sol) polarization free energy of solvation -73.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds