Wall clock time and date at job start Tue Mar 31 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.50696 * 109.47130 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00136 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00378 * 179.97438 * 4 3 2 7 7 C 1.48967 * 125.82335 * 179.97438 * 6 4 3 8 8 C 1.52215 * 105.55295 * 186.83936 * 7 6 4 9 9 H 1.08994 * 110.79837 * 86.08948 * 8 7 6 10 10 C 1.55832 * 99.91005 * 328.87914 * 8 7 6 11 11 H 1.08998 * 101.08871 * 298.32490 * 10 8 7 12 12 C 1.48819 * 102.50878 * 45.04384 * 10 8 7 13 13 C 1.48409 * 108.58016 * 189.30576 * 10 8 7 14 14 H 1.09002 * 113.90620 * 209.41176 * 13 10 8 15 15 C 1.56637 * 102.97284 * 84.27450 * 13 10 8 16 16 C 1.55203 * 106.58144 * 324.15982 * 15 13 10 17 17 C 1.52438 * 119.78941 * 216.94681 * 8 7 6 18 18 H 1.09007 * 112.79502 * 315.30573 * 17 8 7 19 19 C 1.55902 * 103.24315 * 193.04633 * 17 8 7 20 20 N 1.48736 * 105.13174 * 320.15606 * 19 17 8 21 21 C 1.36935 * 122.68544 * 147.09881 * 20 19 17 22 22 H 1.08001 * 119.99932 * 200.19049 * 21 20 19 23 23 C 1.38814 * 119.99858 * 19.90898 * 21 20 19 24 24 N 1.31619 * 120.00324 * 10.66610 * 23 21 20 25 25 Si 1.86804 * 119.99658 * 190.66666 * 23 21 20 26 26 H 1.48495 * 109.47505 * 60.00183 * 25 23 21 27 27 H 1.48506 * 109.46864 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47107 * 299.99808 * 25 23 21 29 29 H 1.08997 * 109.47427 * 300.00629 * 1 2 3 30 30 H 1.08999 * 109.46591 * 60.00359 * 1 2 3 31 31 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46769 * 59.99725 * 3 2 1 33 33 H 1.08993 * 109.47218 * 299.99877 * 3 2 1 34 34 H 1.08996 * 110.22549 * 67.82234 * 7 6 4 35 35 H 1.08997 * 110.23230 * 305.85876 * 7 6 4 36 36 H 1.09000 * 111.06799 * 200.16378 * 12 10 8 37 37 H 1.08998 * 110.19863 * 76.83703 * 12 10 8 38 38 H 1.08995 * 110.12861 * 83.78210 * 15 13 10 39 39 H 1.09007 * 110.12413 * 205.38495 * 15 13 10 40 40 H 1.09000 * 110.92007 * 205.02716 * 16 15 13 41 41 H 1.09005 * 108.65257 * 84.68407 * 16 15 13 42 42 H 1.08999 * 110.30445 * 201.25442 * 19 17 8 43 43 H 1.09004 * 110.43448 * 79.12487 * 19 17 8 44 44 H 0.96999 * 119.99843 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7658 2.3302 0.0013 8 6 6.1409 3.7951 0.1749 9 1 6.1710 4.0645 1.2306 10 6 4.9319 4.4683 -0.5416 11 1 5.0435 4.0776 -1.5530 12 6 3.7726 3.7080 -0.0007 13 6 5.2141 5.9184 -0.6838 14 1 4.3214 6.5440 -0.6854 15 6 6.0688 5.9834 -1.9948 16 6 6.9542 4.7088 -2.0099 17 6 7.3507 4.3595 -0.5611 18 1 8.2204 3.7044 -0.5086 19 6 7.5824 5.7351 0.1349 20 7 6.2211 6.2900 0.3610 21 6 5.9118 7.0732 1.4409 22 1 4.8829 7.1853 1.7495 23 6 6.9211 7.7182 2.1423 24 7 8.1432 7.7524 1.6548 25 14 6.5449 8.5379 3.7782 26 1 6.0354 7.5229 4.7349 27 1 7.7834 9.1522 4.3205 28 1 5.5168 9.5908 3.5794 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 6.1519 1.9519 -0.9452 35 1 6.1555 1.7405 0.8310 36 1 2.9015 3.8086 -0.6481 37 1 3.5448 4.0395 1.0124 38 1 5.4162 6.0004 -2.8676 39 1 6.7041 6.8692 -1.9848 40 1 7.8538 4.8668 -2.6046 41 1 6.3768 3.8883 -2.4363 42 1 8.1570 6.3956 -0.5146 43 1 8.0980 5.5987 1.0856 44 1 8.8484 8.2034 2.1448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087320769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:58 Heat of formation + Delta-G solvation = -3.525786 kcal Electronic energy + Delta-G solvation = -25201.237117 eV Core-core repulsion = 21735.190877 eV Total energy + Delta-G solvation = -3466.046240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13666 -39.26559 -37.47970 -35.90878 -33.21148 -31.32709 -30.65153 -29.86422 -28.78336 -27.46288 -25.96418 -25.36537 -23.61001 -21.89742 -20.84041 -20.53388 -19.38263 -17.44890 -17.22827 -16.91561 -16.49857 -16.30695 -15.81174 -15.04712 -14.86170 -14.63149 -14.32709 -14.17638 -13.61358 -13.23310 -13.09222 -12.55351 -12.44664 -12.29424 -12.16585 -11.78432 -11.65180 -11.32854 -11.20478 -11.05796 -10.94865 -10.76524 -10.65795 -10.42176 -10.21888 -10.11069 -9.98987 -9.76022 -9.62532 -9.23249 -9.01514 -8.55477 -8.52787 -6.80788 -5.78323 -3.15588 2.67247 2.69895 3.36635 3.42659 3.43167 3.79975 4.41983 4.47229 4.75524 4.82326 4.92428 4.99319 5.10844 5.15592 5.20699 5.32074 5.40952 5.42317 5.47886 5.50775 5.62824 5.67306 5.74299 5.82293 5.91544 6.11950 6.14668 6.17263 6.25381 6.30864 6.41935 6.49122 6.58280 6.64284 6.81620 6.89097 6.98092 7.05718 7.38741 7.59233 7.59514 7.76128 8.24888 8.26222 9.14583 9.76169 10.39554 11.32042 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.004477 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.227499 B = 6252.026765 C = 6966.735311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.528 3.472 5 O -0.531 6.531 6 N -0.621 5.621 7 C 0.120 3.880 8 C -0.084 4.084 9 H 0.096 0.904 10 C -0.146 4.146 11 H 0.060 0.940 12 C 0.126 3.874 13 C 0.192 3.808 14 H 0.081 0.919 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.111 4.111 18 H 0.074 0.926 19 C 0.192 3.808 20 N -0.597 5.597 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.001 4.001 24 N -0.913 5.913 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.373 -7.876 -6.075 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.031 4.031 4 C 0.315 3.685 5 O -0.407 6.407 6 N -0.358 5.358 7 C -0.001 4.001 8 C -0.104 4.104 9 H 0.114 0.886 10 C -0.167 4.167 11 H 0.078 0.922 12 C 0.005 3.995 13 C 0.084 3.916 14 H 0.099 0.901 15 C -0.168 4.168 16 C -0.148 4.148 17 C -0.131 4.131 18 H 0.093 0.907 19 C 0.068 3.932 20 N -0.321 5.321 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.198 4.198 24 N -0.559 5.559 25 Si 0.734 3.266 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.870 -8.611 -5.973 14.396 hybrid contribution -0.369 0.747 0.867 1.203 sum -10.240 -7.864 -5.106 13.884 Atomic orbital electron populations 1.22825 0.80539 1.03149 1.00138 1.88002 1.19648 1.25533 1.95430 1.22221 0.91775 0.86566 1.02582 1.19813 0.88212 0.83386 0.77102 1.90712 1.74584 1.25950 1.49498 1.49704 1.07444 1.05702 1.72954 1.21784 0.78501 0.98383 1.01410 1.21970 0.95981 0.90430 1.01993 0.88611 1.21861 0.94259 0.99616 1.01008 0.92163 1.21132 0.96828 0.79956 1.01606 1.20589 0.92657 0.89987 0.88357 0.90054 1.23244 0.98241 0.98274 0.97004 1.22216 0.98670 0.97305 0.96627 1.22424 0.96038 1.00007 0.94609 0.90735 1.21683 0.86102 0.87035 0.98387 1.45522 1.05516 1.57558 1.23487 1.19100 0.93087 1.21277 1.03558 0.91349 1.24909 0.96248 0.99087 0.99582 1.69943 1.00906 1.46987 1.38085 0.86345 0.76931 0.79248 0.84060 1.21241 1.21721 1.21107 0.93790 0.93862 0.89205 0.90200 0.90357 0.91887 0.91412 0.90921 0.90849 0.93260 0.90790 0.92514 0.93202 0.94854 0.91186 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.93 10.24 -55.14 -0.56 -5.50 16 3 C 0.05 0.58 5.50 36.00 0.20 0.77 16 4 C 0.53 8.40 7.95 -10.99 -0.09 8.31 16 5 O -0.53 -10.65 16.85 -14.36 -0.24 -10.90 16 6 N -0.62 -9.35 3.42 -171.72 -0.59 -9.94 16 7 C 0.12 1.90 6.51 -3.08 -0.02 1.88 16 8 C -0.08 -1.42 2.44 -89.80 -0.22 -1.64 16 9 H 0.10 1.91 7.45 -51.93 -0.39 1.52 16 10 C -0.15 -2.27 2.58 -93.39 -0.24 -2.51 16 11 H 0.06 0.91 4.43 -51.93 -0.23 0.68 16 12 C 0.13 1.69 6.53 -4.21 -0.03 1.67 16 13 C 0.19 3.42 4.56 -66.37 -0.30 3.12 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.13 -2.12 5.50 -23.60 -0.13 -2.25 16 16 C -0.11 -1.72 5.43 -24.93 -0.14 -1.85 16 17 C -0.11 -1.91 3.97 -88.72 -0.35 -2.26 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 19 C 0.19 4.21 3.95 -1.26 0.00 4.20 16 20 N -0.60 -13.35 2.20 -159.82 -0.35 -13.70 16 21 C -0.24 -6.12 10.01 -15.06 -0.15 -6.27 16 22 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 23 C 0.00 -0.02 5.24 -17.43 -0.09 -0.11 16 24 N -0.91 -25.34 10.81 55.49 0.60 -24.74 16 25 Si 0.90 21.07 29.57 -169.99 -5.03 16.04 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 34 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.40 7.34 -51.92 -0.38 1.02 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.72 6.58 -51.93 -0.34 0.38 16 42 H 0.03 0.80 7.25 -51.93 -0.38 0.42 16 43 H 0.07 1.75 6.87 -51.93 -0.36 1.39 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -30.92 336.83 -8.63 -39.54 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.08 Total: -0.32 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.45 Total: 4.43 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.34 Total: -48.38 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.81 Total: -16.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.92 -8.63 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087320769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.019 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds