Wall clock time and date at job start Tue Mar 31 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.50696 * 109.47130 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00136 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00378 * 179.97438 * 4 3 2 7 7 C 1.48967 * 125.82335 * 179.97438 * 6 4 3 8 8 C 1.52215 * 105.55295 * 186.83936 * 7 6 4 9 9 H 1.08994 * 110.79837 * 86.08948 * 8 7 6 10 10 C 1.55832 * 99.91005 * 328.87914 * 8 7 6 11 11 H 1.08998 * 101.08871 * 298.32490 * 10 8 7 12 12 C 1.48819 * 102.50878 * 45.04384 * 10 8 7 13 13 C 1.48409 * 108.58016 * 189.30576 * 10 8 7 14 14 H 1.09002 * 113.90620 * 209.41176 * 13 10 8 15 15 C 1.56637 * 102.97284 * 84.27450 * 13 10 8 16 16 C 1.55203 * 106.58144 * 324.15982 * 15 13 10 17 17 C 1.52438 * 119.78941 * 216.94681 * 8 7 6 18 18 H 1.09007 * 112.79502 * 315.30573 * 17 8 7 19 19 C 1.55902 * 103.24315 * 193.04633 * 17 8 7 20 20 N 1.48736 * 105.13174 * 320.15606 * 19 17 8 21 21 C 1.36935 * 122.68544 * 147.09881 * 20 19 17 22 22 H 1.08001 * 119.99932 * 200.19049 * 21 20 19 23 23 C 1.38814 * 119.99858 * 19.90898 * 21 20 19 24 24 N 1.31619 * 120.00324 * 10.66610 * 23 21 20 25 25 Si 1.86804 * 119.99658 * 190.66666 * 23 21 20 26 26 H 1.48495 * 109.47505 * 60.00183 * 25 23 21 27 27 H 1.48506 * 109.46864 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47107 * 299.99808 * 25 23 21 29 29 H 1.08997 * 109.47427 * 300.00629 * 1 2 3 30 30 H 1.08999 * 109.46591 * 60.00359 * 1 2 3 31 31 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46769 * 59.99725 * 3 2 1 33 33 H 1.08993 * 109.47218 * 299.99877 * 3 2 1 34 34 H 1.08996 * 110.22549 * 67.82234 * 7 6 4 35 35 H 1.08997 * 110.23230 * 305.85876 * 7 6 4 36 36 H 1.09000 * 111.06799 * 200.16378 * 12 10 8 37 37 H 1.08998 * 110.19863 * 76.83703 * 12 10 8 38 38 H 1.08995 * 110.12861 * 83.78210 * 15 13 10 39 39 H 1.09007 * 110.12413 * 205.38495 * 15 13 10 40 40 H 1.09000 * 110.92007 * 205.02716 * 16 15 13 41 41 H 1.09005 * 108.65257 * 84.68407 * 16 15 13 42 42 H 1.08999 * 110.30445 * 201.25442 * 19 17 8 43 43 H 1.09004 * 110.43448 * 79.12487 * 19 17 8 44 44 H 0.96999 * 119.99843 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7658 2.3302 0.0013 8 6 6.1409 3.7951 0.1749 9 1 6.1710 4.0645 1.2306 10 6 4.9319 4.4683 -0.5416 11 1 5.0435 4.0776 -1.5530 12 6 3.7726 3.7080 -0.0007 13 6 5.2141 5.9184 -0.6838 14 1 4.3214 6.5440 -0.6854 15 6 6.0688 5.9834 -1.9948 16 6 6.9542 4.7088 -2.0099 17 6 7.3507 4.3595 -0.5611 18 1 8.2204 3.7044 -0.5086 19 6 7.5824 5.7351 0.1349 20 7 6.2211 6.2900 0.3610 21 6 5.9118 7.0732 1.4409 22 1 4.8829 7.1853 1.7495 23 6 6.9211 7.7182 2.1423 24 7 8.1432 7.7524 1.6548 25 14 6.5449 8.5379 3.7782 26 1 6.0354 7.5229 4.7349 27 1 7.7834 9.1522 4.3205 28 1 5.5168 9.5908 3.5794 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 6.1519 1.9519 -0.9452 35 1 6.1555 1.7405 0.8310 36 1 2.9015 3.8086 -0.6481 37 1 3.5448 4.0395 1.0124 38 1 5.4162 6.0004 -2.8676 39 1 6.7041 6.8692 -1.9848 40 1 7.8538 4.8668 -2.6046 41 1 6.3768 3.8883 -2.4363 42 1 8.1570 6.3956 -0.5146 43 1 8.0980 5.5987 1.0856 44 1 8.8484 8.2034 2.1448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087320769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:57 Heat of formation + Delta-G solvation = -22.295791 kcal Electronic energy + Delta-G solvation = -25202.051046 eV Core-core repulsion = 21735.190877 eV Total energy + Delta-G solvation = -3466.860168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.49625 -40.46145 -38.42762 -37.27303 -35.00566 -32.76562 -31.92282 -31.60621 -29.79997 -28.64866 -27.17121 -26.73048 -24.91261 -23.58208 -22.23406 -21.91470 -20.54095 -19.06903 -18.39876 -18.30361 -17.66072 -17.23154 -17.03971 -16.59114 -16.10132 -15.98928 -15.91170 -15.49302 -14.66251 -14.46790 -14.41880 -14.13773 -13.86681 -13.52306 -13.17220 -13.15288 -12.97094 -12.80445 -12.59585 -12.43980 -12.38553 -12.32205 -12.21996 -12.07934 -11.86902 -11.80523 -11.22444 -10.91446 -10.75506 -10.64892 -10.54118 -10.43129 -9.75032 -8.68456 -7.77997 -5.14764 1.48714 1.50595 1.52193 1.55971 1.61018 2.54470 2.91591 3.33080 3.39986 3.40913 3.62028 3.81772 3.93870 4.07835 4.15425 4.22299 4.28561 4.31636 4.33474 4.53362 4.54168 4.55439 4.59677 4.69622 4.75067 4.84386 4.86041 4.88311 4.96234 5.02099 5.08792 5.11231 5.22753 5.31956 5.46386 5.48778 5.63649 5.65427 5.73293 5.86671 6.06239 6.34696 6.44769 7.07236 7.18426 7.87324 8.48682 9.30639 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.004477 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.227499 B = 6252.026765 C = 6966.735311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.053 3.947 4 C 0.521 3.479 5 O -0.582 6.582 6 N -0.619 5.619 7 C 0.126 3.874 8 C -0.079 4.079 9 H 0.057 0.943 10 C -0.138 4.138 11 H 0.077 0.923 12 C 0.131 3.869 13 C 0.186 3.814 14 H 0.092 0.908 15 C -0.123 4.123 16 C -0.104 4.104 17 C -0.101 4.101 18 H 0.084 0.916 19 C 0.202 3.798 20 N -0.612 5.612 21 C -0.237 4.237 22 H 0.076 0.924 23 C -0.059 4.059 24 N -0.946 5.946 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.302 1.302 28 H -0.276 1.276 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.027 0.973 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -8.483 -7.605 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.026 4.026 4 C 0.311 3.689 5 O -0.462 6.462 6 N -0.355 5.355 7 C 0.004 3.996 8 C -0.099 4.099 9 H 0.076 0.924 10 C -0.159 4.159 11 H 0.095 0.905 12 C 0.010 3.990 13 C 0.080 3.920 14 H 0.110 0.890 15 C -0.162 4.162 16 C -0.141 4.141 17 C -0.121 4.121 18 H 0.102 0.898 19 C 0.077 3.923 20 N -0.337 5.337 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.253 4.253 24 N -0.594 5.594 25 Si 0.790 3.210 26 H -0.210 1.210 27 H -0.229 1.229 28 H -0.202 1.202 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.005 -9.207 -7.521 17.620 hybrid contribution 0.552 0.923 1.340 1.718 sum -12.453 -8.284 -6.182 16.184 Atomic orbital electron populations 1.23048 0.78131 1.04222 1.01722 1.87952 1.22296 1.26602 1.95796 1.22303 0.88408 0.86704 1.05154 1.20654 0.90045 0.82495 0.75712 1.90687 1.75830 1.27831 1.51884 1.49737 1.06895 1.06455 1.72385 1.21610 0.79705 0.96957 1.01358 1.21721 0.96715 0.91628 0.99806 0.92405 1.21654 0.94574 0.97813 1.01868 0.90451 1.21253 0.97165 0.78211 1.02353 1.20866 0.92165 0.91424 0.87553 0.89014 1.23153 0.98155 0.97316 0.97550 1.22167 0.99373 0.97586 0.94960 1.22324 0.96904 0.97184 0.95658 0.89785 1.21330 0.85685 0.89221 0.96038 1.45754 1.06505 1.57179 1.24246 1.19490 0.93192 1.19966 1.04099 0.90663 1.25576 0.96357 1.00837 1.02548 1.70131 1.01582 1.48621 1.39100 0.85431 0.76239 0.78451 0.80869 1.21036 1.22905 1.20165 0.92386 0.91978 0.88591 0.87907 0.87028 0.91012 0.92725 0.86544 0.91250 0.89643 0.94003 0.91613 0.90725 0.97837 0.95483 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.86 10.24 -129.94 -1.33 -11.19 16 3 C 0.05 1.07 5.50 71.23 0.39 1.46 16 4 C 0.52 15.35 7.95 87.66 0.70 16.05 16 5 O -0.58 -22.90 16.85 15.99 0.27 -22.63 16 6 N -0.62 -16.93 3.42 -815.58 -2.79 -19.72 16 7 C 0.13 3.79 6.51 85.64 0.56 4.35 16 8 C -0.08 -2.60 2.44 -10.26 -0.03 -2.62 16 9 H 0.06 2.36 7.45 -2.39 -0.02 2.34 16 10 C -0.14 -3.87 2.58 -12.59 -0.03 -3.90 16 11 H 0.08 1.96 4.43 -2.39 -0.01 1.95 16 12 C 0.13 2.98 6.53 84.40 0.55 3.53 16 13 C 0.19 6.24 4.56 44.17 0.20 6.44 16 14 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 15 C -0.12 -3.76 5.50 32.62 0.18 -3.58 16 16 C -0.10 -2.95 5.43 31.76 0.17 -2.77 16 17 C -0.10 -3.43 3.97 -9.56 -0.04 -3.47 16 18 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 19 C 0.20 9.21 3.95 86.95 0.34 9.55 16 20 N -0.61 -27.68 2.20 -659.57 -1.45 -29.13 16 21 C -0.24 -12.18 10.01 84.03 0.84 -11.34 16 22 H 0.08 3.68 7.85 -2.91 -0.02 3.66 16 23 C -0.06 -3.22 5.24 84.86 0.44 -2.78 16 24 N -0.95 -55.06 10.81 21.65 0.23 -54.83 16 25 Si 0.96 44.34 29.57 68.60 2.03 46.37 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.11 1.49 7.93 -2.39 -0.02 1.47 16 34 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.73 7.68 -2.39 -0.02 1.71 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.56 7.34 -2.38 -0.02 1.54 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.82 6.58 -2.38 -0.02 1.80 16 42 H 0.00 0.18 7.25 -2.39 -0.02 0.17 16 43 H 0.03 1.44 6.87 -2.38 -0.02 1.42 16 44 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -71.42 336.83 3.47 -67.95 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.98 Total: 10.69 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.53 Total: 12.49 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -4.01 Total: -103.68 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.06 Total: -33.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.42 3.47 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087320769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.658 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds