Wall clock time and date at job start Tue Mar 31 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08999 * 109.87315 * 55.51031 * 3 2 1 5 5 C 1.54320 * 109.88423 * 294.48986 * 3 2 1 6 6 H 1.09000 * 110.72004 * 336.75580 * 5 3 2 7 7 N 1.46498 * 110.72157 * 100.02469 * 5 3 2 8 8 C 1.34779 * 120.00241 * 204.99931 * 7 5 3 9 9 O 1.21270 * 120.00000 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99890 * 180.02562 * 8 7 5 11 11 C 1.52994 * 119.80853 * 250.98459 * 10 8 7 12 12 C 1.52999 * 60.65304 * 247.69099 * 11 10 8 13 13 H 1.08999 * 120.25098 * 112.13845 * 12 11 10 14 14 C 1.54479 * 118.06180 * 269.58852 * 12 11 10 15 15 O 1.44425 * 104.80154 * 86.82778 * 14 12 11 16 16 C 1.43864 * 105.56857 * 319.94289 * 15 14 12 17 17 C 1.55152 * 102.94375 * 218.39317 * 5 3 2 18 18 C 1.54913 * 101.58042 * 35.50031 * 17 5 3 19 19 N 1.47022 * 109.88015 * 176.68089 * 3 2 1 20 20 C 1.36937 * 125.64719 * 298.33766 * 19 3 2 21 21 H 1.07998 * 120.00704 * 345.73967 * 20 19 3 22 22 C 1.38820 * 119.99650 * 165.73725 * 20 19 3 23 23 N 1.31615 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99793 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47304 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47204 * 120.00178 * 24 22 20 27 27 H 1.48504 * 109.46982 * 240.00155 * 24 22 20 28 28 H 1.08999 * 109.47120 * 185.62529 * 1 2 3 29 29 H 1.09001 * 109.46999 * 305.62347 * 1 2 3 30 30 H 1.08993 * 109.47240 * 65.62178 * 1 2 3 31 31 H 1.08998 * 109.47066 * 120.00065 * 2 1 3 32 32 H 1.08999 * 109.46808 * 239.99776 * 2 1 3 33 33 H 0.97003 * 119.99410 * 25.00546 * 7 5 3 34 34 H 1.09003 * 117.43174 * 355.36821 * 11 10 8 35 35 H 1.08998 * 117.43702 * 140.01120 * 11 10 8 36 36 H 1.08996 * 110.37360 * 205.65722 * 14 12 11 37 37 H 1.08999 * 110.37682 * 327.88755 * 14 12 11 38 38 H 1.09001 * 109.56191 * 281.17062 * 16 15 14 39 39 H 1.09003 * 110.92363 * 159.01141 * 16 15 14 40 40 H 1.08996 * 111.00987 * 153.57699 * 17 5 3 41 41 H 1.09008 * 111.00305 * 277.42944 * 17 5 3 42 42 H 1.08996 * 110.36208 * 81.83568 * 18 17 5 43 43 H 1.09007 * 110.36423 * 204.04290 * 18 17 5 44 44 H 0.96996 * 120.00512 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6162 1.9853 0.8449 5 6 1.6478 2.1379 -1.3206 6 1 1.4768 1.4031 -2.1074 7 7 0.4648 2.9810 -1.1311 8 6 -0.3342 3.2664 -2.1783 9 8 -0.0741 2.8249 -3.2774 10 6 -1.5508 4.1342 -1.9833 11 6 -2.9473 3.5139 -2.0583 12 6 -2.5035 4.4956 -3.1447 13 1 -2.3385 4.1483 -4.1645 14 6 -2.8008 5.9967 -2.9330 15 8 -1.6761 6.4921 -2.1743 16 6 -1.3737 5.4630 -1.2156 17 6 2.8942 3.0047 -1.6405 18 6 4.0427 2.0968 -1.1340 19 7 3.5080 1.4538 0.0800 20 6 4.2549 0.9508 1.1117 21 1 3.7830 0.7098 2.0528 22 6 5.6187 0.7504 0.9478 23 7 6.1940 1.0445 -0.1988 24 14 6.6377 0.0649 2.3553 25 1 5.7606 -0.1796 3.5283 26 1 7.2686 -1.2116 1.9338 27 1 7.6943 1.0415 2.7230 28 1 -0.3633 -1.0227 0.1007 29 1 -0.3633 0.5986 0.8354 30 1 -0.3633 0.4241 -0.9360 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.2567 3.3339 -0.2518 34 1 -3.0150 2.4606 -2.3306 35 1 -3.6904 3.8613 -1.3405 36 1 -2.8666 6.5095 -3.8926 37 1 -3.7258 6.1249 -2.3709 38 1 -2.0783 5.5186 -0.3859 39 1 -0.3503 5.5578 -0.8525 40 1 2.9812 3.1836 -2.7122 41 1 2.8678 3.9451 -1.0899 42 1 4.2907 1.3453 -1.8835 43 1 4.9212 2.6954 -0.8928 44 1 7.1470 0.9049 -0.3132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087579524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:44 Heat of formation + Delta-G solvation = -25.562195 kcal Electronic energy + Delta-G solvation = -24724.471738 eV Core-core repulsion = 21257.469928 eV Total energy + Delta-G solvation = -3467.001810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02121 -39.15979 -37.56789 -34.85860 -34.04831 -32.78271 -31.73495 -29.47605 -28.74089 -26.64080 -25.69580 -24.66113 -23.27385 -21.95647 -21.32361 -20.30005 -20.09586 -19.16437 -17.50678 -16.88743 -16.24462 -15.84526 -15.65859 -14.98674 -14.76572 -14.48795 -14.27022 -14.00930 -13.76740 -13.58475 -13.19297 -12.91406 -12.70181 -12.19066 -12.02099 -11.94945 -11.67151 -11.54512 -11.18046 -10.98427 -10.90971 -10.86168 -10.63900 -10.54766 -10.44870 -10.31065 -10.06841 -9.96327 -9.74391 -9.67357 -9.54003 -8.67488 -8.58309 -6.82754 -5.76754 -3.13346 2.51237 3.10511 3.28066 3.37577 3.43491 3.45665 3.72862 4.09470 4.20502 4.45652 4.60949 4.69858 4.74252 5.01731 5.21431 5.28580 5.33979 5.36116 5.37924 5.45975 5.49863 5.53390 5.55465 5.73126 5.78591 5.81342 5.84225 6.03804 6.21534 6.28041 6.39462 6.41232 6.44560 6.54719 6.66576 6.71854 6.92859 7.12448 7.49885 7.59143 7.69743 7.77828 8.24316 8.36467 9.16411 9.77452 10.45132 11.35107 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.003723 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.928785 B = 7519.252803 C = 7861.935054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.094 0.906 7 N -0.707 5.707 8 C 0.560 3.440 9 O -0.539 6.539 10 C -0.208 4.208 11 C -0.107 4.107 12 C -0.160 4.160 13 H 0.132 0.868 14 C 0.073 3.927 15 O -0.368 6.368 16 C 0.086 3.914 17 C -0.157 4.157 18 C 0.174 3.826 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.076 0.924 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.398 0.602 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 6.831 -2.051 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.356 5.356 8 C 0.345 3.655 9 O -0.416 6.416 10 C -0.212 4.212 11 C -0.144 4.144 12 C -0.179 4.179 13 H 0.150 0.850 14 C -0.004 4.004 15 O -0.286 6.286 16 C 0.009 3.991 17 C -0.197 4.197 18 C 0.049 3.951 19 N -0.319 5.319 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.232 0.768 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.359 6.674 -2.823 19.738 hybrid contribution 0.506 -0.570 1.100 1.338 sum -17.854 6.104 -1.723 18.947 Atomic orbital electron populations 1.21761 0.97294 1.00454 1.00845 1.22019 0.93555 0.99193 1.02420 1.21069 0.87110 0.93352 0.93134 0.94756 1.22139 0.83288 0.92430 0.98844 0.88790 1.45974 1.26757 1.51825 1.11058 1.18936 0.82227 0.79895 0.84480 1.90702 1.72958 1.53166 1.24767 1.23369 0.92364 1.00446 1.05023 1.23136 0.92464 0.99345 0.99476 1.24331 1.01873 0.95332 0.96372 0.85047 1.22979 0.89532 0.90795 0.97069 1.89093 1.49901 1.40262 1.49350 1.22742 1.02632 0.82899 0.90793 1.23434 0.96750 0.99094 1.00382 1.21434 0.93126 0.92934 0.87624 1.44449 0.98362 1.68519 1.20526 1.18986 0.89847 1.35959 0.90863 0.90640 1.24908 0.97185 1.00927 0.97002 1.69934 1.10296 1.52841 1.23142 0.86084 0.80227 0.78481 0.81187 1.20445 1.21689 1.21742 0.93704 0.93434 0.93440 0.91671 0.92393 0.76791 0.87193 0.87685 0.88204 0.91597 0.91275 0.88034 0.91937 0.92002 0.95452 0.90691 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.59 37.16 0.36 -1.76 16 2 C -0.13 -2.43 5.41 -26.73 -0.14 -2.58 16 3 C 0.16 3.16 2.94 -66.95 -0.20 2.96 16 4 H 0.03 0.65 7.71 -51.93 -0.40 0.25 16 5 C 0.14 2.46 2.02 -66.10 -0.13 2.33 16 6 H 0.09 1.85 7.20 -51.93 -0.37 1.48 16 7 N -0.71 -10.15 4.82 -52.04 -0.25 -10.40 16 8 C 0.56 8.31 7.42 -10.98 -0.08 8.23 16 9 O -0.54 -10.15 16.49 5.57 0.09 -10.06 16 10 C -0.21 -2.31 2.84 -154.10 -0.44 -2.74 16 11 C -0.11 -0.90 9.89 -26.73 -0.26 -1.16 16 12 C -0.16 -1.57 6.90 -89.06 -0.61 -2.18 16 13 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.07 0.63 7.45 37.93 0.28 0.91 16 15 O -0.37 -4.28 11.62 -35.23 -0.41 -4.69 16 16 C 0.09 0.86 7.09 37.93 0.27 1.13 16 17 C -0.16 -3.08 6.77 -24.58 -0.17 -3.25 16 18 C 0.17 4.20 5.42 -2.53 -0.01 4.18 16 19 N -0.59 -14.54 3.13 -162.57 -0.51 -15.05 16 20 C -0.23 -6.12 9.75 -15.06 -0.15 -6.27 16 21 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 22 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 23 N -0.92 -26.46 10.56 55.49 0.59 -25.88 16 24 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.69 7.43 -51.93 -0.39 0.31 16 31 H 0.06 1.28 7.89 -51.93 -0.41 0.87 16 32 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.40 4.77 8.17 -40.82 -0.33 4.43 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 42 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 43 H 0.07 2.00 6.90 -51.93 -0.36 1.65 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -31.80 353.32 -8.86 -40.66 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.28 Total: 3.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.39 Total: -0.38 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.17 Total: -51.33 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.32 Total: -14.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.80 -8.86 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087579524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.094 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds