Wall clock time and date at job start Tue Mar 31 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08999 * 109.87315 * 55.51031 * 3 2 1 5 5 C 1.54320 * 109.88423 * 294.48986 * 3 2 1 6 6 H 1.09000 * 110.72004 * 336.75580 * 5 3 2 7 7 N 1.46498 * 110.72157 * 100.02469 * 5 3 2 8 8 C 1.34779 * 120.00241 * 204.99931 * 7 5 3 9 9 O 1.21270 * 120.00000 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99890 * 180.02562 * 8 7 5 11 11 C 1.52994 * 119.80853 * 250.98459 * 10 8 7 12 12 C 1.52999 * 60.65304 * 247.69099 * 11 10 8 13 13 H 1.08999 * 120.25098 * 112.13845 * 12 11 10 14 14 C 1.54479 * 118.06180 * 269.58852 * 12 11 10 15 15 O 1.44425 * 104.80154 * 86.82778 * 14 12 11 16 16 C 1.43864 * 105.56857 * 319.94289 * 15 14 12 17 17 C 1.55152 * 102.94375 * 218.39317 * 5 3 2 18 18 C 1.54913 * 101.58042 * 35.50031 * 17 5 3 19 19 N 1.47022 * 109.88015 * 176.68089 * 3 2 1 20 20 C 1.36937 * 125.64719 * 298.33766 * 19 3 2 21 21 H 1.07998 * 120.00704 * 345.73967 * 20 19 3 22 22 C 1.38820 * 119.99650 * 165.73725 * 20 19 3 23 23 N 1.31615 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99793 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47304 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47204 * 120.00178 * 24 22 20 27 27 H 1.48504 * 109.46982 * 240.00155 * 24 22 20 28 28 H 1.08999 * 109.47120 * 185.62529 * 1 2 3 29 29 H 1.09001 * 109.46999 * 305.62347 * 1 2 3 30 30 H 1.08993 * 109.47240 * 65.62178 * 1 2 3 31 31 H 1.08998 * 109.47066 * 120.00065 * 2 1 3 32 32 H 1.08999 * 109.46808 * 239.99776 * 2 1 3 33 33 H 0.97003 * 119.99410 * 25.00546 * 7 5 3 34 34 H 1.09003 * 117.43174 * 355.36821 * 11 10 8 35 35 H 1.08998 * 117.43702 * 140.01120 * 11 10 8 36 36 H 1.08996 * 110.37360 * 205.65722 * 14 12 11 37 37 H 1.08999 * 110.37682 * 327.88755 * 14 12 11 38 38 H 1.09001 * 109.56191 * 281.17062 * 16 15 14 39 39 H 1.09003 * 110.92363 * 159.01141 * 16 15 14 40 40 H 1.08996 * 111.00987 * 153.57699 * 17 5 3 41 41 H 1.09008 * 111.00305 * 277.42944 * 17 5 3 42 42 H 1.08996 * 110.36208 * 81.83568 * 18 17 5 43 43 H 1.09007 * 110.36423 * 204.04290 * 18 17 5 44 44 H 0.96996 * 120.00512 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6162 1.9853 0.8449 5 6 1.6478 2.1379 -1.3206 6 1 1.4768 1.4031 -2.1074 7 7 0.4648 2.9810 -1.1311 8 6 -0.3342 3.2664 -2.1783 9 8 -0.0741 2.8249 -3.2774 10 6 -1.5508 4.1342 -1.9833 11 6 -2.9473 3.5139 -2.0583 12 6 -2.5035 4.4956 -3.1447 13 1 -2.3385 4.1483 -4.1645 14 6 -2.8008 5.9967 -2.9330 15 8 -1.6761 6.4921 -2.1743 16 6 -1.3737 5.4630 -1.2156 17 6 2.8942 3.0047 -1.6405 18 6 4.0427 2.0968 -1.1340 19 7 3.5080 1.4538 0.0800 20 6 4.2549 0.9508 1.1117 21 1 3.7830 0.7098 2.0528 22 6 5.6187 0.7504 0.9478 23 7 6.1940 1.0445 -0.1988 24 14 6.6377 0.0649 2.3553 25 1 5.7606 -0.1796 3.5283 26 1 7.2686 -1.2116 1.9338 27 1 7.6943 1.0415 2.7230 28 1 -0.3633 -1.0227 0.1007 29 1 -0.3633 0.5986 0.8354 30 1 -0.3633 0.4241 -0.9360 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.2567 3.3339 -0.2518 34 1 -3.0150 2.4606 -2.3306 35 1 -3.6904 3.8613 -1.3405 36 1 -2.8666 6.5095 -3.8926 37 1 -3.7258 6.1249 -2.3709 38 1 -2.0783 5.5186 -0.3859 39 1 -0.3503 5.5578 -0.8525 40 1 2.9812 3.1836 -2.7122 41 1 2.8678 3.9451 -1.0899 42 1 4.2907 1.3453 -1.8835 43 1 4.9212 2.6954 -0.8928 44 1 7.1470 0.9049 -0.3132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087579524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:43 Heat of formation + Delta-G solvation = -46.915030 kcal Electronic energy + Delta-G solvation = -24725.397667 eV Core-core repulsion = 21257.469928 eV Total energy + Delta-G solvation = -3467.927738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92590 -40.45508 -39.04140 -35.75781 -35.55674 -34.31809 -33.51156 -31.01264 -29.83428 -28.13025 -26.57258 -26.30402 -24.57103 -23.30300 -22.19583 -21.96059 -21.52234 -20.41833 -18.77980 -18.48604 -17.54942 -16.86343 -16.67688 -16.48032 -15.93200 -15.78860 -15.69148 -15.37010 -15.23915 -14.82160 -14.40579 -14.11312 -13.84171 -13.61577 -13.56358 -13.25659 -12.99065 -12.89995 -12.72879 -12.64864 -12.26218 -12.20921 -12.04384 -11.98025 -11.91241 -11.75138 -11.59107 -11.41293 -11.28316 -10.87099 -10.69309 -10.52902 -10.03889 -8.84695 -7.86001 -5.24369 1.44201 1.47217 1.47965 1.58136 1.99600 2.39475 2.50827 3.02106 3.34018 3.39254 3.43920 3.51595 3.75299 3.82063 3.86691 4.00945 4.03751 4.16443 4.34794 4.38212 4.39474 4.58109 4.61282 4.65093 4.68828 4.72065 4.72782 4.80116 4.85714 4.91574 4.98089 5.11720 5.14126 5.18654 5.28819 5.44609 5.48113 5.54883 5.64119 5.69740 5.74104 6.22146 6.52629 7.07931 7.19793 7.75610 8.42823 9.25470 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.003723 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.928785 B = 7519.252803 C = 7861.935054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.055 0.945 5 C 0.156 3.844 6 H 0.075 0.925 7 N -0.694 5.694 8 C 0.558 3.442 9 O -0.585 6.585 10 C -0.224 4.224 11 C -0.079 4.079 12 C -0.166 4.166 13 H 0.115 0.885 14 C 0.073 3.927 15 O -0.396 6.396 16 C 0.088 3.912 17 C -0.143 4.143 18 C 0.182 3.818 19 N -0.613 5.613 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.063 4.063 23 N -0.950 5.950 24 Si 0.975 3.025 25 H -0.262 1.262 26 H -0.296 1.296 27 H -0.293 1.293 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.074 0.926 42 H -0.008 1.008 43 H 0.042 0.958 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 7.552 -0.205 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.053 3.947 4 H 0.072 0.928 5 C 0.051 3.949 6 H 0.094 0.906 7 N -0.344 5.344 8 C 0.346 3.654 9 O -0.465 6.465 10 C -0.228 4.228 11 C -0.116 4.116 12 C -0.185 4.185 13 H 0.133 0.867 14 C -0.003 4.003 15 O -0.315 6.315 16 C 0.012 3.988 17 C -0.183 4.183 18 C 0.057 3.943 19 N -0.338 5.338 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.804 3.196 25 H -0.186 1.186 26 H -0.223 1.223 27 H -0.221 1.221 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.251 0.749 34 H 0.125 0.875 35 H 0.159 0.841 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.010 0.990 43 H 0.060 0.940 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.723 7.411 -0.937 22.971 hybrid contribution 1.495 -0.792 0.461 1.754 sum -20.228 6.619 -0.477 21.288 Atomic orbital electron populations 1.21636 0.93686 1.01983 1.01685 1.21913 0.96628 0.97598 1.00545 1.21251 0.84414 0.94588 0.94431 0.92762 1.21647 0.83983 0.91942 0.97366 0.90649 1.45737 1.25430 1.51159 1.12093 1.19619 0.82895 0.79400 0.83487 1.90686 1.74218 1.55057 1.26533 1.23307 0.91608 1.00890 1.06963 1.23298 0.90721 0.98910 0.98691 1.24432 1.01587 0.96732 0.95729 0.86731 1.23160 0.89768 0.89590 0.97757 1.89067 1.51202 1.41060 1.50148 1.22841 1.03279 0.81607 0.91123 1.23244 0.95877 0.98844 1.00299 1.21118 0.93788 0.92302 0.87126 1.44686 1.00600 1.68557 1.19913 1.19360 0.90268 1.34685 0.91727 0.89786 1.25719 0.98533 1.02022 0.99363 1.70147 1.09993 1.54530 1.25199 0.85057 0.78558 0.77094 0.78908 1.18602 1.22326 1.22060 0.92193 0.91265 0.93509 0.93046 0.94820 0.74897 0.87521 0.84129 0.87594 0.88630 0.88003 0.88846 0.91945 0.90741 0.98971 0.93956 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.59 71.98 0.69 -2.80 16 2 C -0.13 -4.60 5.41 30.60 0.17 -4.44 16 3 C 0.16 6.15 2.94 45.34 0.13 6.29 16 4 H 0.05 1.92 7.71 -2.39 -0.02 1.90 16 5 C 0.16 5.57 2.02 46.18 0.09 5.66 16 6 H 0.08 3.03 7.20 -2.39 -0.02 3.01 16 7 N -0.69 -18.74 4.82 -436.94 -2.10 -20.85 16 8 C 0.56 15.86 7.42 87.66 0.65 16.51 16 9 O -0.58 -22.06 16.49 -3.00 -0.05 -22.11 16 10 C -0.22 -4.37 2.84 -51.91 -0.15 -4.51 16 11 C -0.08 -1.02 9.89 30.59 0.30 -0.72 16 12 C -0.17 -2.85 6.90 -9.78 -0.07 -2.92 16 13 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.07 1.04 7.45 72.48 0.54 1.58 16 15 O -0.40 -8.21 11.62 -148.98 -1.73 -9.94 16 16 C 0.09 1.48 7.09 72.49 0.51 2.00 16 17 C -0.14 -5.72 6.77 31.99 0.22 -5.50 16 18 C 0.18 9.23 5.42 86.86 0.47 9.70 16 19 N -0.61 -30.56 3.13 -668.26 -2.09 -32.65 16 20 C -0.23 -12.53 9.75 84.04 0.82 -11.71 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 23 N -0.95 -57.25 10.56 21.65 0.23 -57.02 16 24 Si 0.98 45.22 29.55 68.60 2.03 47.24 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.25 7.43 -2.39 -0.02 1.23 16 31 H 0.05 1.99 7.89 -2.39 -0.02 1.97 16 32 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 33 H 0.41 8.70 8.17 -92.71 -0.76 7.94 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.67 7.88 -2.39 -0.02 1.65 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 42 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 43 H 0.04 2.39 6.90 -2.38 -0.02 2.37 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -72.40 353.32 1.36 -71.04 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.23 Total: 18.24 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.85 Total: 6.04 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -3.97 Total: -110.52 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.78 Total: -32.05 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.40 1.36 -71.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087579524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.124 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds