Wall clock time and date at job start Tue Mar 31 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99957 * 2 1 4 4 H 1.09003 * 109.86871 * 358.99152 * 3 2 1 5 5 O 1.43744 * 109.87845 * 237.83071 * 3 2 1 6 6 C 1.44387 * 106.97265 * 267.08595 * 5 3 2 7 7 C 1.54987 * 103.48978 * 319.94073 * 6 5 3 8 8 C 1.54105 * 109.87866 * 119.99600 * 3 2 1 9 9 H 1.08994 * 110.48685 * 358.59151 * 8 3 2 10 10 C 1.50698 * 110.48651 * 236.06942 * 8 3 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 8 3 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.53781 * 113.61357 * 272.49562 * 14 13 12 16 16 C 1.53776 * 87.08184 * 220.01760 * 15 14 13 17 17 N 1.46505 * 113.61612 * 270.88741 * 16 15 14 18 18 C 1.36937 * 119.99844 * 252.49970 * 17 16 15 19 19 H 1.08005 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00026 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00191 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47371 * 89.99464 * 22 20 18 24 24 H 1.48494 * 109.46942 * 209.99538 * 22 20 18 25 25 H 1.48498 * 109.46850 * 329.99563 * 22 20 18 26 26 C 1.53778 * 87.08288 * 25.43468 * 16 15 14 27 27 H 1.08003 * 119.99996 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00258 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00411 * 179.97438 * 2 1 3 30 30 H 1.08993 * 110.61419 * 78.44393 * 6 5 3 31 31 H 1.09005 * 110.61649 * 201.27936 * 6 5 3 32 32 H 1.08998 * 110.91206 * 278.82117 * 7 6 5 33 33 H 1.09007 * 110.90369 * 155.22256 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 36 36 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 37 37 H 1.09005 * 112.84860 * 43.80350 * 14 13 12 38 38 H 1.08997 * 113.61481 * 334.57104 * 15 14 13 39 39 H 1.09007 * 113.60920 * 105.46937 * 15 14 13 40 40 H 1.08996 * 113.69099 * 139.99258 * 16 15 14 41 41 H 0.96992 * 119.99906 * 72.49333 * 17 16 15 42 42 H 0.96995 * 120.00070 * 180.02562 * 21 20 18 43 43 H 1.08997 * 113.61793 * 220.01871 * 26 16 15 44 44 H 1.08999 * 113.69099 * 89.12542 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9311 1.3685 -1.1443 6 6 4.2186 0.8669 -0.7253 7 6 4.3944 1.4633 0.6944 8 6 2.9529 1.3966 1.2551 9 1 2.8246 0.5121 1.8789 10 6 2.6333 2.6439 2.0382 11 8 1.7740 3.4038 1.6444 12 7 3.3018 2.9144 3.1769 13 6 2.9953 4.1299 3.9350 14 6 3.8937 4.1999 5.1715 15 6 3.3159 3.4690 6.3949 16 6 3.8390 4.6401 7.2432 17 7 5.2127 4.4539 7.7171 18 6 5.4503 4.1804 9.0377 19 1 4.6250 4.1024 9.7299 20 6 6.7519 4.0045 9.4868 21 7 7.7577 4.1001 8.6433 22 14 7.0759 3.6307 11.2881 23 1 7.0688 2.1606 11.4977 24 1 8.3996 4.1798 11.6772 25 1 6.0168 4.2546 12.1214 26 6 3.7368 5.5023 5.9740 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 4.2118 -0.2223 -0.6860 31 1 5.0042 1.2209 -1.3929 32 1 4.7443 2.4943 0.6428 33 1 5.0725 0.8533 1.2913 34 1 3.9888 2.3065 3.4921 35 1 3.1719 5.0037 3.3076 36 1 1.9506 4.1108 4.2455 37 1 4.9307 3.9418 4.9564 38 1 2.2289 3.3897 6.3830 39 1 3.8082 2.5204 6.6094 40 1 3.1559 4.9465 8.0354 41 1 5.9539 4.5243 7.0954 42 1 8.6672 3.9768 8.9571 43 1 4.5687 6.1953 5.8487 44 1 2.7653 5.9798 5.8460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091238031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:57 Heat of formation + Delta-G solvation = -56.684509 kcal Electronic energy + Delta-G solvation = -23313.988990 eV Core-core repulsion = 19845.637615 eV Total energy + Delta-G solvation = -3468.351375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62770 -40.28225 -39.36681 -36.05629 -35.02247 -34.68256 -33.36204 -32.00098 -29.69602 -28.58513 -26.43989 -25.79487 -24.57375 -23.38676 -22.89245 -21.25878 -20.87013 -19.81987 -19.33676 -18.43022 -17.60204 -17.07791 -16.85672 -16.67853 -16.36744 -16.05635 -15.75427 -15.42911 -14.86931 -14.71178 -14.64896 -14.57085 -14.01785 -13.73490 -13.32347 -13.20983 -12.96680 -12.92955 -12.82164 -12.61140 -12.49174 -12.24718 -12.16840 -12.07109 -11.91802 -11.55406 -11.48033 -11.05913 -10.89552 -10.75148 -10.70396 -10.38482 -10.10538 -8.99956 -7.95479 -5.23604 1.22302 1.48611 1.49326 1.53068 1.57902 2.11407 2.55848 3.03813 3.37166 3.42030 3.55982 3.65417 3.71721 3.78680 3.87712 4.10870 4.14929 4.18848 4.21560 4.26312 4.32340 4.40070 4.51265 4.71975 4.74951 4.76775 4.81955 4.87439 4.92682 4.99145 5.00241 5.04927 5.11333 5.27760 5.34845 5.47994 5.54371 5.59890 5.66011 5.77616 5.88519 6.28416 6.48601 7.15485 7.33587 8.10512 8.32972 9.27783 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.002631 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.923747 B =10640.077226 C =10978.631804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.185 4.185 3 C 0.110 3.890 4 H 0.090 0.910 5 O -0.390 6.390 6 C 0.040 3.960 7 C -0.141 4.141 8 C -0.132 4.132 9 H 0.136 0.864 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.712 5.712 13 C 0.139 3.861 14 C -0.101 4.101 15 C -0.152 4.152 16 C 0.144 3.856 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.271 1.271 26 C -0.136 4.136 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.413 0.587 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.057 0.943 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -9.001 -17.285 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.052 3.948 4 H 0.108 0.892 5 O -0.309 6.309 6 C -0.035 4.035 7 C -0.178 4.178 8 C -0.154 4.154 9 H 0.154 0.846 10 C 0.306 3.694 11 O -0.463 6.463 12 N -0.363 5.363 13 C 0.015 3.985 14 C -0.120 4.120 15 C -0.193 4.193 16 C 0.034 3.966 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.195 1.195 26 C -0.175 4.175 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.836 -8.384 -17.540 22.257 hybrid contribution 1.058 -0.284 1.139 1.580 sum -9.778 -8.668 -16.401 20.970 Atomic orbital electron populations 1.24100 0.95914 1.02834 0.97722 1.23347 0.96652 0.98147 1.02174 1.21806 0.92160 0.96797 0.84013 0.89233 1.88951 1.22949 1.85416 1.33604 1.23812 0.85400 0.99581 0.94746 1.23195 0.93849 1.03316 0.97488 1.22726 0.97880 0.97237 0.97523 0.84633 1.20712 0.80500 0.87382 0.80778 1.90666 1.34474 1.51432 1.69697 1.45957 1.40522 1.25741 1.24076 1.21312 0.98876 0.86749 0.91517 1.22488 0.98937 0.98107 0.92428 1.23706 1.00235 0.98803 0.96548 1.21378 0.86172 0.95187 0.93905 1.42296 1.02504 1.84157 1.06830 1.19660 0.92207 1.38692 0.86819 0.90628 1.25529 0.95578 1.03717 1.01836 1.69800 0.98399 1.58482 1.35233 0.85169 0.76862 0.77625 0.80288 1.21379 1.22341 1.19550 1.23356 1.02528 0.95908 0.95755 0.85969 0.89161 0.85176 0.89819 0.87486 0.91050 0.86214 0.75029 0.92107 0.91466 0.89828 0.89113 0.93123 0.92321 0.79311 0.94001 0.92420 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 14.32 67.79 0.97 -1.69 16 2 C -0.19 -3.06 8.87 25.65 0.23 -2.83 16 3 C 0.11 2.30 3.45 30.22 0.10 2.41 16 4 H 0.09 2.41 6.11 -2.39 -0.01 2.40 16 5 O -0.39 -8.65 11.18 -148.98 -1.67 -10.32 16 6 C 0.04 0.56 7.66 72.66 0.56 1.12 16 7 C -0.14 -1.90 6.69 31.89 0.21 -1.69 16 8 C -0.13 -2.28 3.06 -10.55 -0.03 -2.32 16 9 H 0.14 1.70 7.69 -2.39 -0.02 1.68 16 10 C 0.52 12.41 7.02 87.66 0.62 13.02 16 11 O -0.58 -18.76 15.26 -3.04 -0.05 -18.81 16 12 N -0.71 -15.22 5.54 -463.05 -2.57 -17.79 16 13 C 0.14 3.36 5.51 86.38 0.48 3.84 16 14 C -0.10 -2.74 3.63 -10.26 -0.04 -2.77 16 15 C -0.15 -4.63 7.43 31.12 0.23 -4.40 16 16 C 0.14 5.33 4.56 45.51 0.21 5.53 16 17 N -0.72 -34.80 5.31 -320.45 -1.70 -36.50 16 18 C -0.24 -13.06 9.97 84.03 0.84 -12.23 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 21 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 22 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.14 -4.05 7.39 31.12 0.23 -3.82 16 27 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.09 1.59 7.85 -2.91 -0.02 1.57 16 29 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.17 7.86 -2.39 -0.02 1.15 16 33 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.41 7.18 8.47 -92.71 -0.79 6.40 16 35 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 37 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.09 2.37 7.90 -2.39 -0.02 2.35 16 39 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 41 H 0.37 19.36 7.90 -92.71 -0.73 18.63 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.10 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -69.25 363.34 0.87 -68.37 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.52 Total: 34.88 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.07 Total: -9.51 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -3.99 Total: -111.71 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.71 Total: -29.13 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.25 0.87 -68.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091238031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.690 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds