Wall clock time and date at job start Tue Mar 31 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 120.00414 * 2 1 4 4 C 1.47099 * 119.99794 * 357.38125 * 3 2 1 5 5 O 1.21611 * 119.99915 * 5.48432 * 4 3 2 6 6 N 1.34770 * 119.99736 * 185.47746 * 4 3 2 7 7 C 1.46506 * 120.00032 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.45971 * 34.99843 * 7 6 4 9 9 C 1.53039 * 109.45653 * 275.03055 * 7 6 4 10 10 C 1.53198 * 109.30903 * 178.60129 * 9 7 6 11 11 N 1.46922 * 108.76552 * 54.65548 * 10 9 7 12 12 C 1.36943 * 120.62989 * 126.40788 * 11 10 9 13 13 H 1.07999 * 119.99551 * 329.05215 * 12 11 10 14 14 C 1.38811 * 119.99946 * 149.05362 * 12 11 10 15 15 N 1.31620 * 119.99863 * 340.44683 * 14 12 11 16 16 Si 1.86798 * 119.99840 * 160.44564 * 14 12 11 17 17 H 1.48499 * 109.47080 * 60.00207 * 16 14 12 18 18 H 1.48499 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47207 * 299.99856 * 16 14 12 20 20 C 1.46924 * 118.73737 * 306.38199 * 11 10 9 21 21 C 1.53039 * 109.46215 * 154.97703 * 7 6 4 22 22 H 1.08994 * 109.49954 * 61.39506 * 21 7 6 23 23 O 1.42906 * 109.49488 * 301.33575 * 21 7 6 24 24 C 1.50706 * 119.99329 * 180.02562 * 2 1 3 25 25 C 1.52998 * 117.50124 * 306.34137 * 24 2 1 26 26 C 1.52992 * 59.99972 * 107.49429 * 25 24 2 27 27 H 1.08997 * 109.47396 * 180.12365 * 1 2 3 28 28 H 1.09003 * 109.46810 * 300.12808 * 1 2 3 29 29 H 1.09004 * 109.46729 * 60.12627 * 1 2 3 30 30 H 1.07998 * 119.99546 * 177.38631 * 3 2 1 31 31 H 0.97008 * 120.00403 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.49971 * 298.56333 * 9 7 6 33 33 H 1.09002 * 109.50301 * 58.66112 * 9 7 6 34 34 H 1.09000 * 109.59653 * 294.86064 * 10 9 7 35 35 H 1.09003 * 109.69922 * 174.50450 * 10 9 7 36 36 H 0.97008 * 119.99804 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.58766 * 293.81694 * 20 11 10 38 38 H 1.09000 * 109.70233 * 173.47127 * 20 11 10 39 39 H 0.96703 * 113.99774 * 179.97438 * 23 21 7 40 40 H 1.09009 * 115.55880 * 160.66027 * 24 2 1 41 41 H 1.09006 * 117.49560 * 0.02562 * 25 24 2 42 42 H 1.08994 * 117.50090 * 214.98877 * 25 24 2 43 43 H 1.09000 * 117.50353 * 107.48765 * 26 25 24 44 44 H 1.09005 * 117.50162 * 252.49287 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4378 2.4250 -0.0582 5 8 0.2228 2.4292 -0.0057 6 7 2.1115 3.5869 -0.1696 7 6 1.3803 4.8551 -0.2270 8 1 0.4962 4.7935 0.4075 9 6 0.9536 5.1326 -1.6703 10 6 0.1593 6.4417 -1.7209 11 7 0.9675 7.5086 -1.1151 12 6 1.2146 8.6698 -1.7976 13 1 1.2827 8.6586 -2.8754 14 6 1.3775 9.8613 -1.1042 15 7 0.9287 9.9721 0.1282 16 14 2.2337 11.3071 -1.9200 17 1 1.4847 11.7017 -3.1401 18 1 2.2804 12.4520 -0.9754 19 1 3.6171 10.9171 -2.2929 20 6 1.5051 7.3063 0.2373 21 6 2.2839 5.9875 0.2660 22 1 3.1564 6.0654 -0.3827 23 8 2.7069 5.7124 1.6030 24 6 2.2604 -1.3052 -0.0006 25 6 1.9170 -2.3196 1.0921 26 6 1.4781 -2.5724 -0.3516 27 1 -0.3634 -1.0276 0.0022 28 1 -0.3633 0.5158 0.8889 29 1 -0.3633 0.5119 -0.8912 30 1 3.2512 1.1521 0.0427 31 1 3.0807 3.5835 -0.2118 32 1 1.8384 5.2191 -2.3010 33 1 0.3292 4.3143 -2.0290 34 1 -0.7707 6.3267 -1.1643 35 1 -0.0641 6.6961 -2.7571 36 1 1.0429 10.8046 0.6129 37 1 0.6848 7.2620 0.9537 38 1 2.1711 8.1297 0.4950 39 1 3.2844 6.3902 1.9802 40 1 3.2991 -1.2485 -0.3262 41 1 1.1459 -2.0431 1.8112 42 1 2.7298 -2.9302 1.4853 43 1 2.0021 -3.3493 -0.9083 44 1 0.4184 -2.4623 -0.5821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099715667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:27 Heat of formation + Delta-G solvation = -27.264827 kcal Electronic energy + Delta-G solvation = -23959.185999 eV Core-core repulsion = 20492.110357 eV Total energy + Delta-G solvation = -3467.075642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87041 -38.47084 -37.60948 -35.25344 -34.34941 -33.14941 -32.12634 -29.65430 -28.89228 -27.63316 -25.31373 -23.97023 -22.69394 -22.39909 -21.72388 -20.23200 -19.55974 -18.49328 -17.09748 -16.75792 -16.57406 -16.28935 -15.45827 -14.84820 -14.72268 -14.67887 -13.90544 -13.72762 -13.47548 -13.28663 -13.12129 -12.99099 -12.51089 -12.18211 -12.14232 -11.92181 -11.73015 -11.64781 -11.41958 -11.22752 -11.16586 -10.80291 -10.77441 -10.75441 -10.38785 -10.23445 -10.02628 -9.67426 -9.45309 -9.22552 -9.06173 -8.60399 -8.46987 -6.74142 -5.87866 -3.32517 1.34406 3.33489 3.39962 3.40512 3.40993 3.51009 3.70610 4.35523 4.41827 4.54604 4.61572 4.64866 4.75774 4.96591 5.22395 5.28169 5.29836 5.42695 5.48319 5.49236 5.60774 5.63503 5.76549 5.79100 5.85101 5.92988 6.02656 6.05566 6.10904 6.27253 6.41534 6.45266 6.49186 6.55819 6.73869 6.92310 6.94688 7.08203 7.39586 7.74148 7.88053 8.09986 8.37827 8.56650 9.11000 9.73940 10.32806 11.20547 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039813 B = 0.002963 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.111685 B = 9448.863020 C = 9672.715071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.221 4.221 4 C 0.543 3.457 5 O -0.546 6.546 6 N -0.713 5.713 7 C 0.163 3.837 8 H 0.087 0.913 9 C -0.138 4.138 10 C 0.145 3.855 11 N -0.587 5.587 12 C -0.262 4.262 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.897 5.897 16 Si 0.902 3.098 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.152 3.848 21 C 0.072 3.928 22 H 0.051 0.949 23 O -0.573 6.573 24 C -0.131 4.131 25 C -0.167 4.167 26 C -0.174 4.174 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.396 0.604 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.256 0.744 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.375 0.625 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -20.466 0.597 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.012 4.012 3 C -0.242 4.242 4 C 0.332 3.668 5 O -0.426 6.426 6 N -0.361 5.361 7 C 0.059 3.941 8 H 0.105 0.895 9 C -0.179 4.179 10 C 0.018 3.982 11 N -0.311 5.311 12 C -0.391 4.391 13 H 0.084 0.916 14 C -0.192 4.192 15 N -0.540 5.540 16 Si 0.731 3.269 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.025 3.975 21 C 0.011 3.989 22 H 0.069 0.931 23 O -0.377 6.377 24 C -0.149 4.149 25 C -0.204 4.204 26 C -0.211 4.211 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.229 0.771 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.102 0.898 39 H 0.222 0.778 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.907 -20.809 0.660 21.183 hybrid contribution 1.492 1.426 -0.275 2.082 sum 5.399 -19.383 0.384 20.124 Atomic orbital electron populations 1.21069 0.90695 1.00856 1.04686 1.21740 0.96192 0.92214 0.91036 1.22344 0.99990 0.92092 1.09772 1.18441 0.87444 0.84248 0.76686 1.90762 1.13736 1.87486 1.50634 1.45988 1.10128 1.06072 1.73924 1.20938 0.95222 0.80749 0.97149 0.89494 1.22409 1.00889 0.99588 0.94987 1.20947 0.92460 0.87027 0.97729 1.43961 1.56944 1.15248 1.14994 1.19106 1.44291 0.84585 0.91141 0.91592 1.25135 0.99973 0.97229 0.96910 1.70069 1.45862 1.26247 1.11793 0.86392 0.79977 0.81871 0.78673 1.20686 1.21594 1.20952 1.21313 0.96461 0.92463 0.87309 1.22970 0.96727 0.96799 0.82372 0.93061 1.86430 1.70771 1.50485 1.30013 1.21274 0.99576 0.88461 1.05610 1.22977 1.03836 1.01479 0.92068 1.23096 1.01288 0.98248 0.98438 0.93004 0.89771 0.89793 0.85951 0.77063 0.92114 0.91839 0.95891 0.92136 0.93429 0.95121 0.89839 0.77849 0.86798 0.88320 0.88290 0.88354 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.07 36.01 0.29 -1.10 16 2 C -0.01 -0.11 5.83 -101.16 -0.59 -0.70 16 3 C -0.22 -2.72 9.67 -37.81 -0.37 -3.09 16 4 C 0.54 8.61 7.69 -12.67 -0.10 8.51 16 5 O -0.55 -10.25 12.76 5.27 0.07 -10.18 16 6 N -0.71 -11.08 4.91 -54.95 -0.27 -11.35 16 7 C 0.16 3.01 2.12 -67.89 -0.14 2.87 16 8 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 9 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 10 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 11 N -0.59 -14.51 2.97 -172.32 -0.51 -15.02 16 12 C -0.26 -7.04 9.53 -15.06 -0.14 -7.18 16 13 H 0.07 1.74 7.90 -52.49 -0.41 1.33 16 14 C 0.01 0.20 4.82 -17.43 -0.08 0.11 16 15 N -0.90 -25.59 11.59 55.49 0.64 -24.95 16 16 Si 0.90 21.13 29.60 -169.99 -5.03 16.10 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.15 3.52 4.93 -3.72 -0.02 3.50 16 21 C 0.07 1.36 3.14 -26.62 -0.08 1.28 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 23 O -0.57 -9.89 13.16 -35.23 -0.46 -10.35 16 24 C -0.13 -1.12 6.01 -91.77 -0.55 -1.67 16 25 C -0.17 -1.21 10.10 -26.74 -0.27 -1.48 16 26 C -0.17 -1.24 9.80 -26.74 -0.26 -1.50 16 27 H 0.05 0.49 5.64 -51.93 -0.29 0.19 16 28 H 0.08 1.15 7.23 -51.93 -0.38 0.78 16 29 H 0.08 1.13 7.23 -51.93 -0.38 0.76 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.40 5.23 8.59 -40.82 -0.35 4.88 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 2.09 6.38 -51.93 -0.33 1.76 16 39 H 0.37 5.15 9.08 45.56 0.41 5.56 16 40 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.74 6.17 -51.93 -0.32 0.42 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -31.36 353.55 -8.95 -40.31 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.21 Total: 10.18 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.49 Total: -0.06 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.14 Total: -51.33 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.40 Total: -20.53 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.36 -8.95 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099715667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.041 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds