Wall clock time and date at job start Tue Mar 31 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32996 * 120.00414 * 2 1 4 4 C 1.47099 * 119.99794 * 357.38125 * 3 2 1 5 5 O 1.21611 * 119.99915 * 5.48432 * 4 3 2 6 6 N 1.34770 * 119.99736 * 185.47746 * 4 3 2 7 7 C 1.46506 * 120.00032 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.45971 * 34.99843 * 7 6 4 9 9 C 1.53039 * 109.45653 * 275.03055 * 7 6 4 10 10 C 1.53198 * 109.30903 * 178.60129 * 9 7 6 11 11 N 1.46922 * 108.76552 * 54.65548 * 10 9 7 12 12 C 1.36943 * 120.62989 * 126.40788 * 11 10 9 13 13 H 1.07999 * 119.99551 * 329.05215 * 12 11 10 14 14 C 1.38811 * 119.99946 * 149.05362 * 12 11 10 15 15 N 1.31620 * 119.99863 * 340.44683 * 14 12 11 16 16 Si 1.86798 * 119.99840 * 160.44564 * 14 12 11 17 17 H 1.48499 * 109.47080 * 60.00207 * 16 14 12 18 18 H 1.48499 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47207 * 299.99856 * 16 14 12 20 20 C 1.46924 * 118.73737 * 306.38199 * 11 10 9 21 21 C 1.53039 * 109.46215 * 154.97703 * 7 6 4 22 22 H 1.08994 * 109.49954 * 61.39506 * 21 7 6 23 23 O 1.42906 * 109.49488 * 301.33575 * 21 7 6 24 24 C 1.50706 * 119.99329 * 180.02562 * 2 1 3 25 25 C 1.52998 * 117.50124 * 306.34137 * 24 2 1 26 26 C 1.52992 * 59.99972 * 107.49429 * 25 24 2 27 27 H 1.08997 * 109.47396 * 180.12365 * 1 2 3 28 28 H 1.09003 * 109.46810 * 300.12808 * 1 2 3 29 29 H 1.09004 * 109.46729 * 60.12627 * 1 2 3 30 30 H 1.07998 * 119.99546 * 177.38631 * 3 2 1 31 31 H 0.97008 * 120.00403 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.49971 * 298.56333 * 9 7 6 33 33 H 1.09002 * 109.50301 * 58.66112 * 9 7 6 34 34 H 1.09000 * 109.59653 * 294.86064 * 10 9 7 35 35 H 1.09003 * 109.69922 * 174.50450 * 10 9 7 36 36 H 0.97008 * 119.99804 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.58766 * 293.81694 * 20 11 10 38 38 H 1.09000 * 109.70233 * 173.47127 * 20 11 10 39 39 H 0.96703 * 113.99774 * 179.97438 * 23 21 7 40 40 H 1.09009 * 115.55880 * 160.66027 * 24 2 1 41 41 H 1.09006 * 117.49560 * 0.02562 * 25 24 2 42 42 H 1.08994 * 117.50090 * 214.98877 * 25 24 2 43 43 H 1.09000 * 117.50353 * 107.48765 * 26 25 24 44 44 H 1.09005 * 117.50162 * 252.49287 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4378 2.4250 -0.0582 5 8 0.2228 2.4292 -0.0057 6 7 2.1115 3.5869 -0.1696 7 6 1.3803 4.8551 -0.2270 8 1 0.4962 4.7935 0.4075 9 6 0.9536 5.1326 -1.6703 10 6 0.1593 6.4417 -1.7209 11 7 0.9675 7.5086 -1.1151 12 6 1.2146 8.6698 -1.7976 13 1 1.2827 8.6586 -2.8754 14 6 1.3775 9.8613 -1.1042 15 7 0.9287 9.9721 0.1282 16 14 2.2337 11.3071 -1.9200 17 1 1.4847 11.7017 -3.1401 18 1 2.2804 12.4520 -0.9754 19 1 3.6171 10.9171 -2.2929 20 6 1.5051 7.3063 0.2373 21 6 2.2839 5.9875 0.2660 22 1 3.1564 6.0654 -0.3827 23 8 2.7069 5.7124 1.6030 24 6 2.2604 -1.3052 -0.0006 25 6 1.9170 -2.3196 1.0921 26 6 1.4781 -2.5724 -0.3516 27 1 -0.3634 -1.0276 0.0022 28 1 -0.3633 0.5158 0.8889 29 1 -0.3633 0.5119 -0.8912 30 1 3.2512 1.1521 0.0427 31 1 3.0807 3.5835 -0.2118 32 1 1.8384 5.2191 -2.3010 33 1 0.3292 4.3143 -2.0290 34 1 -0.7707 6.3267 -1.1643 35 1 -0.0641 6.6961 -2.7571 36 1 1.0429 10.8046 0.6129 37 1 0.6848 7.2620 0.9537 38 1 2.1711 8.1297 0.4950 39 1 3.2844 6.3902 1.9802 40 1 3.2991 -1.2485 -0.3262 41 1 1.1459 -2.0431 1.8112 42 1 2.7298 -2.9302 1.4853 43 1 2.0021 -3.3493 -0.9083 44 1 0.4184 -2.4623 -0.5821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099715667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:26 Heat of formation + Delta-G solvation = -49.041057 kcal Electronic energy + Delta-G solvation = -23960.130287 eV Core-core repulsion = 20492.110357 eV Total energy + Delta-G solvation = -3468.019930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16014 -39.70046 -38.66792 -36.90349 -35.83304 -34.10956 -33.91158 -31.37968 -30.56569 -28.74380 -27.01621 -25.13630 -24.01503 -23.34842 -23.19853 -21.48090 -21.14013 -19.52965 -18.80493 -18.14680 -17.89176 -17.43942 -16.84159 -16.37557 -15.97576 -15.78269 -15.62102 -15.27549 -15.04941 -14.58597 -14.42365 -14.11076 -13.88834 -13.76629 -13.46096 -13.36382 -13.08050 -12.92367 -12.61711 -12.56647 -12.44717 -12.12034 -12.10463 -12.05654 -11.91354 -11.87370 -11.35088 -11.33463 -11.00418 -10.60892 -10.54461 -10.14108 -9.69600 -8.75438 -7.93488 -5.42408 0.37646 1.48336 1.49728 1.57383 2.26262 2.31418 2.48562 3.04776 3.09613 3.24061 3.59058 3.62252 3.87942 3.89751 3.97558 4.05652 4.13911 4.17027 4.28283 4.30552 4.40093 4.43497 4.65859 4.70915 4.80616 4.84584 4.88922 4.93282 5.01420 5.03186 5.11176 5.13097 5.14767 5.27557 5.28504 5.48488 5.52128 5.56083 5.59450 5.63279 6.32460 6.68420 6.80808 7.07873 7.35397 7.74621 8.30559 9.13196 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039813 B = 0.002963 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.111685 B = 9448.863020 C = 9672.715071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.001 3.999 3 C -0.234 4.234 4 C 0.536 3.464 5 O -0.583 6.583 6 N -0.704 5.704 7 C 0.172 3.828 8 H 0.052 0.948 9 C -0.121 4.121 10 C 0.142 3.858 11 N -0.603 5.603 12 C -0.273 4.273 13 H 0.071 0.929 14 C -0.043 4.043 15 N -0.932 5.932 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.273 1.273 20 C 0.161 3.839 21 C 0.093 3.907 22 H 0.067 0.933 23 O -0.573 6.573 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.168 4.168 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.006 0.994 35 H 0.066 0.934 36 H 0.253 0.747 37 H -0.005 1.005 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 -22.533 -0.311 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.001 4.001 3 C -0.255 4.255 4 C 0.327 3.673 5 O -0.466 6.466 6 N -0.353 5.353 7 C 0.066 3.934 8 H 0.071 0.929 9 C -0.161 4.161 10 C 0.016 3.984 11 N -0.328 5.328 12 C -0.403 4.403 13 H 0.088 0.912 14 C -0.240 4.240 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.201 1.201 18 H -0.221 1.221 19 H -0.199 1.199 20 C 0.034 3.966 21 C 0.032 3.968 22 H 0.085 0.915 23 O -0.380 6.380 24 C -0.162 4.162 25 C -0.199 4.199 26 C -0.204 4.204 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.145 -22.902 -0.254 23.713 hybrid contribution 0.696 1.997 0.049 2.116 sum 6.842 -20.904 -0.205 21.996 Atomic orbital electron populations 1.20994 0.91756 1.01772 1.02670 1.22002 0.95755 0.93534 0.88800 1.22334 1.01176 0.90284 1.11699 1.19096 0.87232 0.85291 0.75678 1.90754 1.15543 1.88035 1.52293 1.45779 1.10729 1.04915 1.73927 1.20588 0.94251 0.82179 0.96371 0.92924 1.22189 1.00912 0.97749 0.95276 1.21036 0.92062 0.87820 0.97460 1.44213 1.57749 1.15531 1.15263 1.19460 1.43733 0.85475 0.91618 0.91184 1.25922 1.00720 0.99821 0.97523 1.70223 1.47360 1.26745 1.13319 0.85322 0.79134 0.78330 0.77529 1.20120 1.22103 1.19866 1.21129 0.95232 0.94245 0.86040 1.22542 0.96409 0.94335 0.83506 0.91488 1.86409 1.71203 1.51151 1.29257 1.21339 1.00232 0.87291 1.07304 1.23072 1.04156 1.00665 0.91969 1.23201 1.01148 0.97572 0.98513 0.90560 0.92005 0.91730 0.83030 0.75308 0.90754 0.91258 0.97580 0.91539 0.93845 0.98694 0.91954 0.75885 0.85152 0.89008 0.86457 0.86503 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 8.07 71.24 0.57 -2.15 16 2 C 0.00 0.02 5.83 -17.61 -0.10 -0.08 16 3 C -0.23 -5.34 9.67 23.43 0.23 -5.12 16 4 C 0.54 16.71 7.69 86.57 0.67 17.37 16 5 O -0.58 -22.42 12.76 -4.07 -0.05 -22.47 16 6 N -0.70 -21.11 4.91 -446.02 -2.19 -23.30 16 7 C 0.17 6.33 2.12 45.02 0.10 6.42 16 8 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 9 C -0.12 -4.42 5.65 30.67 0.17 -4.24 16 10 C 0.14 6.20 6.52 86.37 0.56 6.77 16 11 N -0.60 -30.32 2.97 -699.10 -2.08 -32.40 16 12 C -0.27 -14.77 9.53 84.03 0.80 -13.97 16 13 H 0.07 3.66 7.90 -2.91 -0.02 3.64 16 14 C -0.04 -2.37 4.82 84.86 0.41 -1.97 16 15 N -0.93 -54.54 11.59 21.65 0.25 -54.29 16 16 Si 0.97 43.55 29.60 68.60 2.03 45.58 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 C 0.16 7.67 4.93 86.36 0.43 8.10 16 21 C 0.09 3.47 3.14 30.67 0.10 3.57 16 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 23 O -0.57 -19.34 13.16 -148.98 -1.96 -21.30 16 24 C -0.14 -2.01 6.01 -11.54 -0.07 -2.08 16 25 C -0.16 -1.86 10.10 30.59 0.31 -1.55 16 26 C -0.17 -1.86 9.80 30.59 0.30 -1.56 16 27 H 0.08 1.35 5.64 -2.39 -0.01 1.34 16 28 H 0.06 1.74 7.23 -2.39 -0.02 1.72 16 29 H 0.06 1.78 7.23 -2.38 -0.02 1.76 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.41 9.90 8.59 -92.70 -0.80 9.11 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 36 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 37 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.06 3.22 6.38 -2.39 -0.02 3.20 16 39 H 0.39 10.33 9.08 -74.06 -0.67 9.66 16 40 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 1.17 6.17 -2.38 -0.01 1.16 16 Total: -1.00 -69.37 353.55 0.01 -69.36 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.45 Total: 29.29 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 4.47 Total: 9.53 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.02 Total: -109.99 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -2.01 Total: -43.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -69.37 0.01 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099715667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.320 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds