Wall clock time and date at job start Tue Mar 31 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32989 * 120.00345 * 2 1 4 4 C 1.47099 * 120.00298 * 172.73521 * 3 2 1 5 5 O 1.21617 * 120.00052 * 353.43031 * 4 3 2 6 6 N 1.34772 * 120.00177 * 173.42386 * 4 3 2 7 7 C 1.46497 * 120.00248 * 179.72723 * 6 4 3 8 8 H 1.09000 * 109.46146 * 35.24803 * 7 6 4 9 9 C 1.53043 * 109.46024 * 275.27883 * 7 6 4 10 10 C 1.53193 * 109.31516 * 178.61188 * 9 7 6 11 11 N 1.46930 * 108.77260 * 54.63170 * 10 9 7 12 12 C 1.36939 * 120.62633 * 126.37326 * 11 10 9 13 13 H 1.08000 * 120.00218 * 330.63483 * 12 11 10 14 14 C 1.38812 * 119.99895 * 150.63967 * 12 11 10 15 15 N 1.31615 * 120.00240 * 344.57365 * 14 12 11 16 16 Si 1.86801 * 119.99777 * 164.57774 * 14 12 11 17 17 H 1.48500 * 109.47387 * 90.00132 * 16 14 12 18 18 H 1.48508 * 109.46872 * 209.99587 * 16 14 12 19 19 H 1.48496 * 109.47184 * 329.99623 * 16 14 12 20 20 C 1.46919 * 118.74327 * 306.39599 * 11 10 9 21 21 C 1.53033 * 109.46488 * 155.21135 * 7 6 4 22 22 H 1.09008 * 109.49889 * 301.33965 * 21 7 6 23 23 O 1.42900 * 109.49938 * 61.43103 * 21 7 6 24 24 C 1.50700 * 119.99827 * 180.02562 * 2 1 3 25 25 C 1.53006 * 117.49810 * 1.01595 * 24 2 1 26 26 C 1.52998 * 60.00060 * 252.51248 * 25 24 2 27 27 H 1.09000 * 109.47293 * 89.99617 * 1 2 3 28 28 H 1.08999 * 109.47345 * 210.00094 * 1 2 3 29 29 H 1.09000 * 109.46861 * 330.00109 * 1 2 3 30 30 H 1.08001 * 119.99980 * 352.74141 * 3 2 1 31 31 H 0.97008 * 120.00069 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.50020 * 298.56487 * 9 7 6 33 33 H 1.09001 * 109.49727 * 58.62919 * 9 7 6 34 34 H 1.08994 * 109.59036 * 174.41886 * 10 9 7 35 35 H 1.09003 * 109.58619 * 294.84634 * 10 9 7 36 36 H 0.96994 * 120.00385 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.59096 * 173.40201 * 20 11 10 38 38 H 1.09004 * 109.58460 * 293.67671 * 20 11 10 39 39 H 0.96700 * 114.00009 * 180.02562 * 23 21 7 40 40 H 1.08996 * 115.54971 * 146.72847 * 24 2 1 41 41 H 1.08998 * 117.49833 * 0.02562 * 25 24 2 42 42 H 1.09000 * 117.49569 * 145.01976 * 25 24 2 43 43 H 1.09007 * 117.50020 * 252.51243 * 26 25 24 44 44 H 1.09000 * 117.49488 * 107.49166 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6342 1.1568 0.1611 5 8 4.2218 0.1223 0.4134 6 7 4.3227 2.3078 0.0290 7 6 5.7782 2.3140 0.1953 8 1 6.1920 1.3834 -0.1931 9 6 6.1210 2.4434 1.6812 10 6 7.6428 2.4146 1.8545 11 7 8.2352 3.4572 1.0055 12 6 9.0843 4.3908 1.5371 13 1 8.9798 4.6902 2.5695 14 6 10.0795 4.9525 0.7490 15 7 10.4098 4.3898 -0.3941 16 14 10.9499 6.5069 1.3108 17 1 12.1411 6.1426 2.1193 18 1 11.3779 7.2909 0.1244 19 1 10.0228 7.3229 2.1352 20 6 7.8988 3.4795 -0.4245 21 6 6.3741 3.4962 -0.5722 22 1 6.1098 3.4159 -1.6267 23 8 5.8571 4.7184 -0.0421 24 6 2.2605 -1.3051 -0.0006 25 6 1.4385 -2.5954 -0.0252 26 6 2.1658 -2.1760 1.2538 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6386 2.0833 -0.1182 31 1 3.8540 3.1330 -0.1720 32 1 5.7290 3.3855 2.0644 33 1 5.6761 1.6138 2.2308 34 1 7.8956 2.6054 2.8974 35 1 8.0262 1.4388 1.5561 36 1 11.1049 4.7825 -0.9449 37 1 8.3205 4.3728 -0.8853 38 1 8.3052 2.5918 -0.9094 39 1 6.1926 5.5112 -0.4825 40 1 3.2076 -1.3009 -0.5401 41 1 0.3528 -2.5002 -0.0414 42 1 1.8447 -3.4403 -0.5812 43 1 3.0506 -2.7451 1.5394 44 1 1.5585 -1.8050 2.0795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099715670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:33 Heat of formation + Delta-G solvation = -22.351354 kcal Electronic energy + Delta-G solvation = -24269.554176 eV Core-core repulsion = 20802.691598 eV Total energy + Delta-G solvation = -3466.862578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.89515 -38.39798 -37.32282 -34.76683 -34.17929 -33.47611 -32.00950 -29.59186 -29.06006 -27.97336 -25.16087 -23.48577 -22.42155 -22.27951 -21.79621 -20.36788 -19.53147 -18.45757 -17.30425 -16.84400 -16.18057 -15.62394 -15.27904 -15.00513 -14.58078 -14.38185 -13.85888 -13.73233 -13.66933 -13.34243 -13.18033 -12.95141 -12.72439 -12.43750 -12.07654 -11.96132 -11.65725 -11.41266 -11.25054 -11.07422 -10.85345 -10.77672 -10.57672 -10.45682 -10.43090 -10.10780 -10.01587 -9.68443 -9.38067 -9.12558 -8.96494 -8.56806 -8.43920 -6.64354 -5.80695 -3.23104 1.32213 3.35922 3.43341 3.45086 3.46315 3.55251 3.91516 4.45619 4.48371 4.69490 4.86031 4.92444 5.00301 5.03717 5.26556 5.29902 5.33571 5.39236 5.46527 5.49685 5.51790 5.62414 5.64746 5.81569 5.99715 6.04144 6.07132 6.18455 6.25784 6.27548 6.34600 6.46885 6.55676 6.61833 6.82723 6.93943 7.03865 7.19815 7.44861 7.78493 7.90737 8.26583 8.45028 8.56952 9.19277 9.81942 10.39841 11.28100 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037148 B = 0.003217 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.556103 B = 8701.752974 C = 8986.004565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 C -0.221 4.221 4 C 0.540 3.460 5 O -0.542 6.542 6 N -0.716 5.716 7 C 0.164 3.836 8 H 0.089 0.911 9 C -0.135 4.135 10 C 0.148 3.852 11 N -0.583 5.583 12 C -0.243 4.243 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.908 5.908 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.146 3.854 21 C 0.073 3.927 22 H 0.042 0.958 23 O -0.560 6.560 24 C -0.114 4.114 25 C -0.193 4.193 26 C -0.155 4.155 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.253 0.747 37 H 0.094 0.906 38 H 0.027 0.973 39 H 0.374 0.626 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -6.946 -1.976 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C -0.242 4.242 4 C 0.329 3.671 5 O -0.421 6.421 6 N -0.366 5.366 7 C 0.060 3.940 8 H 0.107 0.893 9 C -0.176 4.176 10 C 0.021 3.979 11 N -0.305 5.305 12 C -0.373 4.373 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.553 5.553 16 Si 0.733 3.267 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.019 3.981 21 C 0.012 3.988 22 H 0.060 0.940 23 O -0.365 6.365 24 C -0.131 4.131 25 C -0.229 4.229 26 C -0.192 4.192 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.221 0.779 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.903 -8.024 -1.504 20.591 hybrid contribution 0.626 1.715 -0.301 1.850 sum -18.277 -6.309 -1.805 19.419 Atomic orbital electron populations 1.20994 0.91351 1.03147 1.02845 1.21760 0.95019 0.93437 0.91173 1.22438 0.93906 0.98481 1.09361 1.18534 0.87612 0.83702 0.77300 1.90741 1.71040 1.31613 1.48751 1.46131 1.08656 1.10280 1.71485 1.20954 0.78397 0.97715 0.96954 0.89332 1.22291 0.99194 1.01272 0.94800 1.20898 0.89922 0.91655 0.95391 1.43855 1.51911 1.30769 1.03981 1.19167 1.06757 1.14409 0.96932 0.91790 1.25062 0.96702 1.00032 0.98029 1.69999 1.32061 1.39172 1.14054 0.86289 0.79591 0.83290 0.77565 1.21427 1.21655 1.20476 1.21416 0.87832 1.02299 0.86538 1.22835 0.97828 0.84128 0.94030 0.93996 1.86350 1.70722 1.15381 1.64045 1.21420 1.00446 0.87771 1.03500 1.23136 0.98839 0.98748 1.02223 1.22783 1.02529 1.02586 0.91274 0.90451 0.90898 0.91058 0.85695 0.76552 0.91353 0.92928 0.92531 0.96302 0.93659 0.88798 0.95475 0.77913 0.84975 0.88802 0.88756 0.88494 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.50 36.01 0.34 -0.60 16 2 C -0.01 -0.13 5.80 -101.17 -0.59 -0.72 16 3 C -0.22 -2.62 9.62 -37.81 -0.36 -2.99 16 4 C 0.54 8.33 7.63 -12.67 -0.10 8.23 16 5 O -0.54 -9.89 13.02 5.26 0.07 -9.82 16 6 N -0.72 -10.97 5.05 -54.95 -0.28 -11.25 16 7 C 0.16 2.98 2.20 -67.89 -0.15 2.83 16 8 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 9 C -0.14 -2.64 5.51 -26.61 -0.15 -2.78 16 10 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 11 N -0.58 -14.54 2.93 -172.32 -0.50 -15.04 16 12 C -0.24 -6.62 9.58 -15.06 -0.14 -6.77 16 13 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 -0.01 4.94 -17.43 -0.09 -0.10 16 15 N -0.91 -25.80 11.19 55.49 0.62 -25.18 16 16 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.15 3.36 4.93 -3.72 -0.02 3.34 16 21 C 0.07 1.35 3.38 -26.62 -0.09 1.26 16 22 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 23 O -0.56 -10.00 12.09 -35.23 -0.43 -10.43 16 24 C -0.11 -1.36 4.30 -91.77 -0.39 -1.76 16 25 C -0.19 -1.79 9.79 -26.73 -0.26 -2.05 16 26 C -0.15 -1.70 10.23 -26.73 -0.27 -1.97 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.48 6.34 -51.93 -0.33 0.15 16 29 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.40 5.41 8.24 -40.82 -0.34 5.08 16 32 H 0.07 1.40 7.61 -51.93 -0.40 1.01 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.09 2.35 6.11 -51.93 -0.32 2.04 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.37 5.79 9.08 45.56 0.41 6.20 16 40 H 0.13 1.93 6.31 -51.93 -0.33 1.60 16 41 H 0.09 0.72 6.29 -51.93 -0.33 0.39 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -31.06 352.07 -8.73 -39.79 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.20 Total: 11.03 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.29 Total: -0.81 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.16 Total: -51.47 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.36 Total: -20.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.06 -8.73 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099715670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.439 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds