Wall clock time and date at job start Tue Mar 31 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47121 * 119.99880 * 2 1 4 4 C 1.50694 * 120.00340 * 3.39051 * 3 2 1 5 5 C 1.32870 * 119.99848 * 183.38351 * 3 2 1 6 6 C 1.50703 * 119.99925 * 5.83889 * 5 3 2 7 7 C 1.50697 * 109.47243 * 125.44798 * 6 5 3 8 8 O 1.21277 * 120.00250 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99758 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00068 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45897 * 34.97343 * 10 9 7 12 12 C 1.53042 * 109.46186 * 275.00528 * 10 9 7 13 13 C 1.53187 * 109.31168 * 178.61377 * 12 10 9 14 14 N 1.46916 * 108.77870 * 54.63434 * 13 12 10 15 15 C 1.36941 * 120.63520 * 126.36729 * 14 13 12 16 16 H 1.07995 * 120.00280 * 212.67331 * 15 14 13 17 17 C 1.38817 * 119.99447 * 32.67329 * 15 14 13 18 18 N 1.31618 * 119.99590 * 197.51441 * 17 15 14 19 19 Si 1.86796 * 120.00159 * 17.51492 * 17 15 14 20 20 H 1.48500 * 109.47231 * 273.24627 * 19 17 15 21 21 H 1.48506 * 109.47409 * 33.24971 * 19 17 15 22 22 H 1.48503 * 109.47136 * 153.24546 * 19 17 15 23 23 C 1.46933 * 118.73861 * 306.64238 * 14 13 12 24 24 C 1.52756 * 109.00720 * 53.30632 * 23 14 13 25 25 H 1.09002 * 109.35706 * 65.50221 * 24 23 14 26 26 O 1.42904 * 109.59393 * 185.53708 * 24 23 14 27 27 H 1.07996 * 119.99977 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00279 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47218 * 270.00096 * 4 3 2 31 31 H 1.09007 * 109.46742 * 29.99737 * 4 3 2 32 32 H 1.09004 * 109.47724 * 149.99610 * 4 3 2 33 33 H 1.08000 * 120.00407 * 185.82958 * 5 3 2 34 34 H 1.09000 * 109.47349 * 5.44375 * 6 5 3 35 35 H 1.09004 * 109.46541 * 245.44963 * 6 5 3 36 36 H 0.96996 * 120.00574 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.49690 * 58.65854 * 12 10 9 38 38 H 1.08996 * 109.51922 * 298.57707 * 12 10 9 39 39 H 1.09004 * 109.58451 * 294.84331 * 13 12 10 40 40 H 1.09007 * 109.70502 * 174.49288 * 13 12 10 41 41 H 0.97000 * 119.99635 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58670 * 173.14589 * 23 14 13 43 43 H 1.09001 * 109.58260 * 293.56717 * 23 14 13 44 44 H 0.96698 * 113.99419 * 299.99063 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3128 2.5781 0.0772 5 6 3.3912 1.2751 -0.0679 6 6 4.1360 -0.0182 -0.2773 7 6 5.0406 0.1113 -1.4756 8 8 5.0767 1.1512 -2.0986 9 7 5.8095 -0.9285 -1.8549 10 6 6.6886 -0.8029 -3.0201 11 1 7.0773 0.2141 -3.0738 12 6 5.8966 -1.1136 -4.2923 13 6 6.8098 -0.9476 -5.5109 14 7 8.0039 -1.7829 -5.3244 15 6 8.3784 -2.6884 -6.2810 16 1 8.8599 -3.6109 -5.9923 17 6 8.1391 -2.4203 -7.6219 18 7 8.1707 -3.3967 -8.5039 19 14 7.7722 -0.6740 -8.1743 20 1 6.3164 -0.4100 -8.0468 21 1 8.5251 0.2827 -7.3239 22 1 8.1835 -0.5063 -9.5913 23 6 8.7853 -1.6327 -4.0892 24 6 7.8531 -1.7871 -2.8889 25 1 7.4667 -2.8060 -2.8602 26 8 8.5733 -1.5161 -1.6847 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8687 -0.9353 -0.0004 30 1 1.0790 2.9228 -0.9301 31 1 0.3878 2.4318 0.6350 32 1 1.9280 3.3227 0.5825 33 1 3.9362 2.2027 0.0268 34 1 3.4227 -0.8250 -0.4460 35 1 4.7335 -0.2405 0.6068 36 1 5.7805 -1.7604 -1.3569 37 1 5.0537 -0.4271 -4.3729 38 1 5.5283 -2.1386 -4.2507 39 1 7.1058 0.0972 -5.6059 40 1 6.2816 -1.2610 -6.4115 41 1 8.0038 -3.2093 -9.4409 42 1 9.5588 -2.3997 -4.0505 43 1 9.2458 -0.6450 -4.0660 44 1 9.3269 -2.1036 -1.5366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099953965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:39 Heat of formation + Delta-G solvation = -56.991493 kcal Electronic energy + Delta-G solvation = -23906.097840 eV Core-core repulsion = 20437.733153 eV Total energy + Delta-G solvation = -3468.364687 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17624 -39.65259 -37.80132 -37.11321 -35.75302 -34.06764 -33.02874 -31.91527 -30.94218 -30.44909 -27.33072 -25.99982 -24.27551 -23.72352 -22.70091 -21.57172 -21.21450 -19.04614 -18.51511 -18.08290 -17.99791 -17.68044 -16.81480 -16.75644 -16.21098 -15.87040 -15.65966 -15.26183 -15.09862 -14.71053 -14.54009 -14.25658 -14.03834 -13.91178 -13.72668 -13.43948 -13.23614 -13.18566 -13.00968 -12.86783 -12.67952 -12.43745 -12.18683 -11.93799 -11.70906 -11.53717 -11.45810 -11.33491 -11.15254 -10.92492 -10.67223 -10.05866 -9.12472 -8.95786 -8.22206 -5.61041 0.44376 1.27298 1.38072 1.46311 1.68219 2.02227 2.35962 2.37078 2.92236 3.09941 3.34049 3.72984 3.78681 3.90702 3.98956 4.01188 4.09790 4.21845 4.23987 4.30470 4.44369 4.56852 4.59213 4.68102 4.68370 4.77980 4.79647 4.82973 4.85961 4.89739 4.94208 5.01637 5.14816 5.23357 5.47802 5.50126 5.58872 5.82449 5.83748 6.04765 6.09580 6.60914 6.78572 6.91479 7.31279 7.52984 7.95526 8.97067 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.003518 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.501864 B = 7957.528187 C = 8605.549127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.118 4.118 5 C -0.140 4.140 6 C -0.106 4.106 7 C 0.511 3.489 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.127 4.127 13 C 0.123 3.877 14 N -0.613 5.613 15 C -0.251 4.251 16 H 0.062 0.938 17 C -0.021 4.021 18 N -0.951 5.951 19 Si 0.936 3.064 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.306 1.306 23 C 0.118 3.882 24 C 0.101 3.899 25 H 0.072 0.928 26 O -0.568 6.568 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.264 0.736 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 4.852 21.883 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.111 4.111 4 C -0.175 4.175 5 C -0.159 4.159 6 C -0.145 4.145 7 C 0.299 3.701 8 O -0.468 6.468 9 N -0.356 5.356 10 C 0.061 3.939 11 H 0.080 0.920 12 C -0.167 4.167 13 C -0.003 4.003 14 N -0.339 5.339 15 C -0.380 4.380 16 H 0.080 0.920 17 C -0.217 4.217 18 N -0.596 5.596 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.234 1.234 23 C -0.008 4.008 24 C 0.040 3.960 25 H 0.090 0.910 26 O -0.375 6.375 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.018 6.001 21.373 25.244 hybrid contribution 0.606 0.001 -0.990 1.161 sum -11.413 6.002 20.383 24.119 Atomic orbital electron populations 1.24671 0.95531 1.03085 0.97781 1.22128 0.95946 0.96276 1.02130 1.20826 0.93821 0.95447 1.00992 1.20840 1.00580 0.93783 1.02264 1.22794 0.94420 0.97812 1.00843 1.20832 0.98535 0.98860 0.96274 1.21252 0.80165 0.82685 0.85963 1.90684 1.68130 1.30475 1.57557 1.45862 1.42416 1.16785 1.30582 1.20612 0.88964 0.99192 0.85121 0.92027 1.22214 0.98103 1.02344 0.94051 1.21367 0.87968 0.93467 0.97471 1.44372 1.26104 1.44546 1.18918 1.18839 1.36313 0.96890 0.85998 0.92001 1.25914 0.99894 0.99861 0.96070 1.69902 1.54317 1.32566 1.02794 0.86090 0.78318 0.82983 0.76057 1.19908 1.19623 1.23431 1.21689 0.93855 1.00079 0.85205 1.22179 0.91493 0.97593 0.84730 0.90994 1.86454 1.47932 1.62817 1.40310 0.86613 0.87638 0.85354 0.91705 0.90334 0.91369 0.87707 0.85973 0.85415 0.74818 0.91585 0.90639 0.95938 0.92311 0.92731 0.90376 0.95248 0.75280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.08 66.64 0.94 -1.32 16 2 C -0.15 -2.29 9.24 23.43 0.22 -2.07 16 3 C -0.11 -2.06 5.98 -18.71 -0.11 -2.17 16 4 C -0.12 -1.87 9.43 71.23 0.67 -1.19 16 5 C -0.14 -2.91 8.43 24.51 0.21 -2.70 16 6 C -0.11 -1.88 5.94 29.10 0.17 -1.71 16 7 C 0.51 13.83 7.79 87.66 0.68 14.51 16 8 O -0.59 -21.76 15.70 -3.02 -0.05 -21.81 16 9 N -0.71 -17.61 4.92 -442.40 -2.18 -19.78 16 10 C 0.17 5.33 2.12 45.02 0.10 5.42 16 11 H 0.06 2.34 7.58 -2.38 -0.02 2.32 16 12 C -0.13 -4.52 5.65 30.67 0.17 -4.35 16 13 C 0.12 5.36 4.21 86.36 0.36 5.72 16 14 N -0.61 -28.13 2.70 -699.93 -1.89 -30.02 16 15 C -0.25 -13.75 10.00 84.03 0.84 -12.91 16 16 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 17 C -0.02 -1.23 5.25 84.86 0.45 -0.78 16 18 N -0.95 -58.55 13.97 21.65 0.30 -58.24 16 19 Si 0.94 47.00 24.39 68.60 1.67 48.67 16 20 H -0.27 -13.04 6.46 99.48 0.64 -12.40 16 21 H -0.27 -13.46 6.96 99.48 0.69 -12.77 16 22 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 23 C 0.12 4.30 6.11 86.22 0.53 4.83 16 24 C 0.10 2.95 3.13 30.52 0.10 3.05 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 O -0.57 -13.74 13.16 -148.98 -1.96 -15.70 16 27 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.11 1.24 6.25 -2.91 -0.02 1.22 16 29 H 0.13 1.62 5.93 -2.91 -0.02 1.60 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.08 0.97 6.58 -2.38 -0.02 0.95 16 32 H 0.07 1.01 8.06 -2.38 -0.02 1.00 16 33 H 0.10 2.42 8.04 -2.91 -0.02 2.40 16 34 H 0.12 1.65 5.36 -2.39 -0.01 1.63 16 35 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.42 7.54 8.60 -92.71 -0.80 6.75 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.02 1.01 7.17 -2.39 -0.02 0.99 16 40 H 0.06 2.79 4.83 -2.38 -0.01 2.78 16 41 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.40 6.16 9.08 -74.06 -0.67 5.49 16 Total: -1.00 -73.31 351.41 0.68 -72.63 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.54 Total: 19.94 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.32 Total: 4.32 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.76 Total: -108.05 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -2.01 Total: -37.51 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -73.31 0.68 -72.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099953965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.637 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds