Wall clock time and date at job start Tue Mar 31 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.77781 * 2 1 4 4 C 1.54325 * 110.72139 * 236.76049 * 2 1 3 5 5 N 1.47025 * 107.40109 * 219.52109 * 4 2 1 6 6 C 1.34770 * 125.64904 * 178.82961 * 5 4 2 7 7 O 1.21742 * 119.99934 * 175.01525 * 6 5 4 8 8 C 1.41797 * 119.99975 * 355.01843 * 6 5 4 9 9 C 1.33456 * 118.78777 * 79.54681 * 8 6 5 10 10 O 1.34351 * 123.07987 * 180.11237 * 9 8 6 11 11 C 1.45354 * 117.54522 * 344.22037 * 10 9 8 12 12 C 1.53481 * 108.26552 * 47.22416 * 11 10 9 13 13 C 1.50419 * 118.78479 * 259.81645 * 8 6 5 14 14 C 1.47429 * 108.69952 * 358.85902 * 5 4 2 15 15 C 1.54903 * 104.83308 * 24.13291 * 14 5 4 16 16 H 1.09007 * 111.00553 * 81.05978 * 15 14 5 17 17 C 1.52999 * 111.00536 * 204.87181 * 15 14 5 18 18 N 1.46496 * 109.47542 * 293.54737 * 17 15 14 19 19 C 1.36935 * 120.00478 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99619 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00109 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99865 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46861 * 59.99766 * 23 21 19 25 25 H 1.48497 * 109.47054 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47013 * 299.99895 * 23 21 19 27 27 H 1.08997 * 109.47094 * 181.78236 * 1 2 3 28 28 H 1.08995 * 109.47322 * 301.78878 * 1 2 3 29 29 H 1.09006 * 109.47227 * 61.78895 * 1 2 3 30 30 H 1.09001 * 109.88201 * 100.02410 * 4 2 1 31 31 H 1.09000 * 109.88232 * 339.01344 * 4 2 1 32 32 H 1.08005 * 118.46092 * 0.39559 * 9 8 6 33 33 H 1.09003 * 109.70154 * 287.53053 * 11 10 9 34 34 H 1.08995 * 109.73705 * 166.93896 * 11 10 9 35 35 H 1.08994 * 109.70710 * 177.60275 * 12 11 10 36 36 H 1.08998 * 109.73780 * 57.00891 * 12 11 10 37 37 H 1.09003 * 109.45036 * 282.35409 * 13 8 6 38 38 H 1.08995 * 109.45918 * 42.31633 * 13 8 6 39 39 H 1.09002 * 110.36137 * 142.96834 * 14 5 4 40 40 H 1.08996 * 110.36809 * 265.18290 * 14 5 4 41 41 H 1.09003 * 109.47087 * 53.54929 * 17 15 14 42 42 H 1.09004 * 109.47392 * 173.54255 * 17 15 14 43 43 H 0.97003 * 119.99610 * 359.97438 * 18 17 15 44 44 H 0.97001 * 119.99654 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7912 -1.2073 5 7 3.2438 -1.5534 -0.7416 6 6 3.9879 -2.3882 -1.4938 7 8 4.9894 -2.8991 -1.0269 8 6 3.6041 -2.6715 -2.8292 9 6 3.8884 -1.7814 -3.7821 10 8 3.5633 -1.9605 -5.0733 11 6 3.1977 -3.3028 -5.4946 12 6 2.1928 -3.8679 -4.4815 13 6 2.8862 -3.9612 -3.1184 14 6 3.4657 -1.2538 0.6848 15 6 2.0832 -0.7972 1.2138 16 1 1.4481 -1.6543 1.4380 17 6 2.2359 0.1042 2.4405 18 7 2.7855 -0.6741 3.5533 19 6 3.0111 -0.0740 4.7632 20 1 2.7842 0.9734 4.8971 21 6 3.5324 -0.8115 5.8174 22 7 3.8095 -2.0878 5.6540 23 14 3.8408 0.0075 7.4677 24 1 2.5624 0.5421 8.0015 25 1 4.3968 -0.9886 8.4184 26 1 4.8090 1.1202 7.2949 27 1 -0.3633 -1.0271 0.0320 28 1 -0.3634 0.5413 0.8735 29 1 -0.3634 0.4858 -0.9056 30 1 2.3741 -0.1024 -1.9977 31 1 1.3121 -1.4739 -1.5792 32 1 4.4082 -0.8768 -3.5029 33 1 4.0860 -3.9339 -5.5223 34 1 2.7415 -3.2667 -6.4838 35 1 1.8698 -4.8596 -4.7982 36 1 1.3300 -3.2057 -4.4103 37 1 3.6042 -4.7812 -3.1318 38 1 2.1411 -4.1436 -2.3441 39 1 3.7976 -2.1478 1.2129 40 1 4.1987 -0.4548 0.7951 41 1 2.9104 0.9274 2.2049 42 1 1.2612 0.5026 2.7223 43 1 2.9897 -1.6148 3.4329 44 1 4.1734 -2.6032 6.3907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105924637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:56 Heat of formation + Delta-G solvation = -51.194130 kcal Electronic energy + Delta-G solvation = -24085.928494 eV Core-core repulsion = 20617.815199 eV Total energy + Delta-G solvation = -3468.113294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78390 -39.54915 -37.80242 -34.64713 -34.28467 -32.91166 -31.87897 -31.34472 -29.01548 -26.53024 -26.11668 -25.42620 -24.26616 -23.02809 -21.30020 -20.38131 -19.90240 -18.74582 -17.63675 -17.11057 -16.80528 -16.19626 -15.95129 -15.28359 -14.62400 -14.50187 -14.21563 -14.04737 -13.81828 -13.57710 -13.46550 -13.17467 -13.06781 -12.90149 -12.76779 -12.24399 -12.18819 -11.94594 -11.61078 -11.28416 -11.23749 -11.07313 -10.94210 -10.82976 -10.57217 -10.46771 -10.32737 -10.01972 -9.75745 -9.63067 -8.85057 -8.63153 -8.46712 -6.90313 -5.73088 -3.02543 1.63240 2.62280 2.98373 3.31217 3.46417 3.50516 3.51973 4.31568 4.38643 4.53562 4.58034 4.60239 4.72823 4.86553 4.87633 4.96386 5.11254 5.14253 5.29214 5.34417 5.47326 5.50791 5.53787 5.57127 5.61330 5.73936 5.76356 5.85806 5.91007 5.96416 6.04190 6.07893 6.17546 6.23116 6.34045 6.42336 6.53187 6.71834 6.85744 7.01106 7.66209 7.71704 8.27712 8.45124 9.56189 10.13395 10.47715 11.49520 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.003254 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.226379 B = 8603.685623 C = 9186.373763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.110 3.890 5 N -0.614 5.614 6 C 0.583 3.417 7 O -0.538 6.538 8 C -0.280 4.280 9 C 0.103 3.897 10 O -0.315 6.315 11 C 0.055 3.945 12 C -0.155 4.155 13 C -0.061 4.061 14 C 0.115 3.885 15 C -0.100 4.100 16 H 0.084 0.916 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.021 0.979 42 H 0.024 0.976 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 -0.150 -24.312 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.013 4.013 5 N -0.348 5.348 6 C 0.372 3.628 7 O -0.415 6.415 8 C -0.284 4.284 9 C 0.038 3.962 10 O -0.227 6.227 11 C -0.019 4.019 12 C -0.193 4.193 13 C -0.098 4.098 14 C -0.007 4.007 15 C -0.119 4.119 16 H 0.102 0.898 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.219 -0.233 -24.145 24.934 hybrid contribution 0.247 -0.093 1.129 1.159 sum -5.971 -0.326 -23.016 23.781 Atomic orbital electron populations 1.21728 0.93797 1.02141 1.01962 1.22272 0.96289 0.99527 0.93756 0.89513 1.22062 0.87787 0.94418 0.97038 1.48697 1.30004 1.44049 1.12019 1.16407 0.82655 0.78263 0.85470 1.90873 1.25238 1.51511 1.73895 1.20043 1.12498 1.01691 0.94207 1.22387 0.93751 0.97885 0.82226 1.86217 1.81140 1.31456 1.23878 1.23483 0.98570 0.81545 0.98325 1.22184 0.98795 1.02819 0.95465 1.20115 0.98764 0.93900 0.97030 1.22320 0.97465 1.01742 0.79195 1.22696 0.95382 0.99130 0.94740 0.89774 1.20573 0.96527 0.92932 0.86160 1.42356 1.76796 1.10392 1.08166 1.19160 1.35507 0.94288 0.88352 0.91235 1.24751 1.01963 0.95858 0.98323 1.69655 1.49982 1.06500 1.31881 0.86266 0.77887 0.78104 0.83902 1.21295 1.21700 1.21274 0.92495 0.91669 0.92705 0.91892 0.91555 0.82040 0.91030 0.87535 0.89539 0.90307 0.90383 0.90241 0.89944 0.91081 0.96139 0.95833 0.78210 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.14 37.16 0.34 -1.05 16 2 C -0.10 -1.17 3.03 -88.65 -0.27 -1.44 16 3 H 0.09 0.99 8.04 -51.93 -0.42 0.58 16 4 C 0.11 1.24 5.92 -3.06 -0.02 1.22 16 5 N -0.61 -9.07 3.33 -173.86 -0.58 -9.65 16 6 C 0.58 9.27 6.80 -14.90 -0.10 9.17 16 7 O -0.54 -11.03 17.38 5.15 0.09 -10.94 16 8 C -0.28 -3.38 4.59 -105.07 -0.48 -3.86 16 9 C 0.10 1.08 10.35 29.06 0.30 1.38 16 10 O -0.31 -2.97 10.47 -14.89 -0.16 -3.13 16 11 C 0.06 0.37 7.15 37.41 0.27 0.63 16 12 C -0.16 -1.04 6.23 -26.37 -0.16 -1.20 16 13 C -0.06 -0.60 5.89 -27.91 -0.16 -0.76 16 14 C 0.11 1.98 6.06 -2.53 -0.02 1.96 16 15 C -0.10 -1.58 2.56 -88.34 -0.23 -1.81 16 16 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 17 C 0.17 3.25 5.72 -4.04 -0.02 3.22 16 18 N -0.73 -18.60 5.45 -59.91 -0.33 -18.92 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 32 H 0.16 1.54 7.98 -52.48 -0.42 1.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 40 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 41 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 10.36 7.53 -40.82 -0.31 10.05 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -34.13 358.71 -8.08 -42.22 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.42 Total: 5.31 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.80 Total: 0.02 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.18 Total: -56.55 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.07 Total: -14.07 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.13 -8.08 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105924637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.977 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds