Wall clock time and date at job start Tue Mar 31 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47016 * 329.69578 * 3 2 1 5 5 C 1.42900 * 114.00101 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46872 * 329.99896 * 5 4 3 7 7 C 1.53002 * 109.47400 * 89.99791 * 5 4 3 8 8 C 1.50701 * 109.47064 * 210.00087 * 5 4 3 9 9 O 1.21279 * 120.00002 * 344.18083 * 8 5 4 10 10 N 1.34774 * 119.99720 * 164.18988 * 8 5 4 11 11 C 1.48128 * 127.03039 * 184.36089 * 10 8 5 12 12 C 1.54598 * 103.41959 * 219.27967 * 11 10 8 13 13 H 1.09000 * 110.57254 * 81.17158 * 12 11 10 14 14 C 1.52996 * 110.98816 * 204.37023 * 12 11 10 15 15 N 1.46497 * 109.47464 * 288.65598 * 14 12 11 16 16 C 1.36931 * 120.00216 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00476 * 359.97438 * 16 15 14 18 18 C 1.38821 * 120.00089 * 180.02562 * 16 15 14 19 19 N 1.31610 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47454 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47260 * 119.99972 * 20 18 16 23 23 H 1.48500 * 109.47208 * 239.99852 * 20 18 16 24 24 C 1.54611 * 102.91420 * 322.86811 * 12 11 10 25 25 H 1.08997 * 110.33105 * 262.80661 * 24 12 11 26 26 C 1.53004 * 110.41395 * 140.63612 * 24 12 11 27 27 C 1.47480 * 127.03996 * 4.67055 * 10 8 5 28 28 H 4.38448 * 5.44360 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47164 * 89.69095 * 3 2 1 30 30 H 1.08996 * 109.46989 * 209.69600 * 3 2 1 31 31 H 1.09001 * 109.46998 * 54.86503 * 7 5 4 32 32 H 1.08994 * 109.47338 * 174.86261 * 7 5 4 33 33 H 1.08999 * 109.47355 * 294.86502 * 7 5 4 34 34 H 1.08999 * 110.66070 * 337.76524 * 11 10 8 35 35 H 1.08996 * 110.66049 * 100.87872 * 11 10 8 36 36 H 1.09007 * 109.46775 * 48.65625 * 14 12 11 37 37 H 1.09001 * 109.47440 * 168.65647 * 14 12 11 38 38 H 0.96999 * 120.00012 * 0.02562 * 15 14 12 39 39 H 0.97005 * 120.00446 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47049 * 302.86867 * 26 24 12 41 41 H 1.08996 * 109.47112 * 62.87656 * 26 24 12 42 42 H 1.09005 * 109.47089 * 182.87626 * 26 24 12 43 43 H 1.09003 * 109.91326 * 273.88363 * 27 10 8 44 44 H 1.09004 * 109.91234 * 35.15749 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.1623 0.6798 5 6 4.5474 -1.2588 0.7373 6 1 4.9799 -0.7765 -0.1393 7 6 5.0550 -0.5656 2.0033 8 6 4.9519 -2.7103 0.7628 9 8 4.1307 -3.5642 1.0221 10 7 6.2264 -3.0594 0.4977 11 6 6.7716 -4.4326 0.3918 12 6 8.1547 -4.3231 1.0738 13 1 8.0528 -4.3787 2.1576 14 6 9.1043 -5.4093 0.5646 15 7 8.6834 -6.7109 1.0887 16 6 9.3876 -7.8397 0.7646 17 1 10.2531 -7.7705 0.1222 18 6 8.9884 -9.0732 1.2608 19 7 7.9335 -9.1577 2.0432 20 14 9.9495 -10.6129 0.8192 21 1 11.0845 -10.2509 -0.0672 22 1 10.4704 -11.2438 2.0586 23 1 9.0572 -11.5684 0.1149 24 6 8.6434 -2.9216 0.6409 25 1 9.3080 -3.0013 -0.2193 26 6 9.3577 -2.2239 1.8002 27 6 7.3648 -2.1525 0.2598 28 1 -1.0498 -0.0003 0.0000 29 1 3.0094 -0.0047 -1.0276 30 1 3.0089 0.8935 0.5091 31 1 4.5535 -0.9872 2.8744 32 1 6.1305 -0.7175 2.0944 33 1 4.8426 0.5018 1.9430 34 1 6.1363 -5.1408 0.9238 35 1 6.8821 -4.7231 -0.6529 36 1 9.0803 -5.4312 -0.5250 37 1 10.1181 -5.1926 0.9014 38 1 7.9055 -6.7733 1.6647 39 1 7.6547 -10.0196 2.3903 40 1 8.6859 -2.1620 2.6564 41 1 10.2456 -2.7931 2.0753 42 1 9.6503 -1.2192 1.4948 43 1 7.4011 -1.8703 -0.7925 44 1 7.2671 -1.2630 0.8822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106111299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:01 Heat of formation + Delta-G solvation = -34.364989 kcal Electronic energy + Delta-G solvation = -23650.173937 eV Core-core repulsion = 20182.790409 eV Total energy + Delta-G solvation = -3467.383528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45362 -39.68242 -38.51837 -36.47401 -34.59104 -34.14653 -33.04185 -32.40778 -30.49312 -28.10856 -27.52755 -27.14448 -25.41745 -24.22952 -22.48752 -21.12124 -20.62590 -19.62647 -19.07889 -18.15595 -17.83945 -17.10368 -16.84104 -16.52843 -16.39962 -15.75414 -15.40884 -15.18120 -15.07098 -14.90135 -14.36800 -14.22978 -13.93128 -13.64962 -13.59959 -13.33853 -13.31760 -13.01654 -12.83499 -12.70833 -12.56288 -12.31246 -12.06466 -11.95563 -11.79010 -11.70101 -11.58928 -11.48342 -11.41288 -10.96673 -10.91375 -10.49580 -9.75208 -9.00724 -7.95154 -5.24779 1.26367 1.46245 1.47779 1.49084 1.57831 1.80030 1.90015 2.55519 2.97886 3.30110 3.38908 3.57106 3.60129 3.70750 3.81820 3.87137 4.02108 4.19470 4.22397 4.24845 4.38322 4.46104 4.52306 4.55677 4.60787 4.72716 4.79717 4.81742 4.87389 4.90959 4.99580 5.05065 5.09030 5.20667 5.25173 5.28444 5.38845 5.49508 5.57673 5.99209 6.26288 6.50517 6.58122 7.06322 7.31961 8.08803 8.29960 9.28841 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003051 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.838286 B = 9174.025686 C =10156.533447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.392 6.392 5 C 0.085 3.915 6 H 0.129 0.871 7 C -0.168 4.168 8 C 0.518 3.482 9 O -0.586 6.586 10 N -0.616 5.616 11 C 0.116 3.884 12 C -0.093 4.093 13 H 0.064 0.936 14 C 0.164 3.836 15 N -0.750 5.750 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.090 4.090 25 H 0.106 0.894 26 C -0.139 4.139 27 C 0.095 3.905 28 H 0.251 0.749 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.370 0.630 39 H 0.250 0.750 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 28.321 -5.664 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.312 6.312 5 C 0.024 3.976 6 H 0.147 0.853 7 C -0.226 4.226 8 C 0.307 3.693 9 O -0.465 6.465 10 N -0.350 5.350 11 C -0.007 4.007 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.038 3.962 15 N -0.392 5.392 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.274 4.274 19 N -0.625 5.625 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.224 1.224 24 C -0.110 4.110 25 H 0.124 0.876 26 C -0.197 4.197 27 C -0.025 4.025 28 H 0.267 0.733 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.298 27.718 -5.538 28.458 hybrid contribution -0.323 -1.729 0.255 1.778 sum -3.621 25.989 -5.283 26.767 Atomic orbital electron populations 1.25877 0.96978 0.96909 0.98700 1.23214 0.95204 1.03123 1.02346 1.19519 0.84423 0.88827 0.98356 1.88095 1.20312 1.44907 1.77879 1.21984 0.82238 0.90508 1.02830 0.85331 1.22316 1.02669 1.02389 0.95197 1.20968 0.80519 0.91934 0.75832 1.90727 1.51845 1.54110 1.49860 1.48861 1.07854 1.08868 1.69449 1.22279 0.94173 0.83751 1.00449 1.22331 0.93347 0.96051 0.99547 0.91783 1.20815 0.95691 0.83540 0.96162 1.42676 1.34128 1.03059 1.59338 1.19711 1.07552 0.86636 1.23337 0.90064 1.25648 0.99607 1.01088 1.01027 1.69853 1.28742 1.24327 1.39536 0.85038 0.77946 0.79427 0.77142 1.18489 1.22123 1.22381 1.22106 0.96499 0.91674 1.00686 0.87621 1.21843 0.99935 1.01275 0.96616 1.22723 0.83112 0.93259 1.03453 0.73264 0.88699 0.87505 0.93366 0.88902 0.87631 0.94168 0.90712 0.95277 0.94919 0.79888 0.94164 0.93194 0.92926 0.89206 0.88285 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 19.25 74.32 1.43 -1.51 16 2 C -0.24 -4.95 13.73 31.12 0.43 -4.52 16 3 C 0.16 2.68 6.22 70.18 0.44 3.12 16 4 O -0.39 -10.05 9.53 -130.44 -1.24 -11.29 16 5 C 0.08 1.68 2.51 29.85 0.07 1.76 16 6 H 0.13 1.38 7.62 -2.39 -0.02 1.37 16 7 C -0.17 -2.39 9.37 71.98 0.67 -1.71 16 8 C 0.52 16.17 7.17 87.66 0.63 16.80 16 9 O -0.59 -26.11 16.77 15.52 0.26 -25.85 16 10 N -0.62 -16.57 3.29 -810.07 -2.67 -19.24 16 11 C 0.12 3.98 6.46 86.61 0.56 4.54 16 12 C -0.09 -2.86 2.60 -9.70 -0.03 -2.88 16 13 H 0.06 2.23 7.86 -2.39 -0.02 2.21 16 14 C 0.16 6.24 5.58 86.38 0.48 6.72 16 15 N -0.75 -38.77 5.52 -343.45 -1.90 -40.67 16 16 C -0.24 -13.59 9.99 84.04 0.84 -12.75 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 18 C -0.08 -4.84 5.50 84.87 0.47 -4.37 16 19 N -0.97 -62.25 13.06 21.65 0.28 -61.96 16 20 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 C -0.09 -1.68 3.17 -9.91 -0.03 -1.71 16 25 H 0.11 1.69 7.85 -2.39 -0.02 1.67 16 26 C -0.14 -2.13 8.90 71.98 0.64 -1.49 16 27 C 0.10 1.47 6.21 86.53 0.54 2.01 16 28 H 0.25 2.26 7.80 -4.43 -0.03 2.23 16 29 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.11 1.01 7.99 -2.39 -0.02 0.99 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.00 5.84 -2.39 -0.01 0.99 16 33 H 0.11 0.78 7.99 -2.39 -0.02 0.76 16 34 H 0.04 1.75 7.82 -2.39 -0.02 1.73 16 35 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 36 H 0.03 1.08 8.00 -2.38 -0.02 1.06 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 39 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.11 1.01 5.08 -2.39 -0.01 1.00 16 Total: -1.00 -85.57 368.26 4.18 -81.40 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.27 Total: 24.44 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 7.14 Total: 3.99 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -4.28 Total: -121.87 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.98 Total: -37.14 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -85.57 4.18 -81.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106111299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.031 kcal (2) G-P(sol) polarization free energy of solvation -85.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds