Wall clock time and date at job start Tue Mar 31 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47151 * 330.88223 * 3 2 1 5 5 C 1.42903 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.47480 * 127.03464 * 179.97438 * 9 7 6 11 11 C 1.54005 * 107.08392 * 154.52142 * 10 9 7 12 12 H 1.09001 * 110.32903 * 120.19727 * 11 10 9 13 13 C 1.53001 * 110.32657 * 242.31285 * 11 10 9 14 14 N 1.46505 * 109.47006 * 293.54526 * 13 11 10 15 15 C 1.36936 * 119.99857 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00261 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99732 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46992 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47119 * 119.99788 * 19 17 15 22 22 H 1.48504 * 109.46617 * 239.99812 * 19 17 15 23 23 C 1.54620 * 105.04566 * 1.30183 * 11 10 9 24 24 H 1.08994 * 110.74524 * 263.51451 * 23 11 10 25 25 C 1.53001 * 110.74037 * 140.36711 * 23 11 10 26 26 C 1.48119 * 127.02859 * 359.68854 * 9 7 6 27 27 H 4.38443 * 5.44454 * 179.97438 * 4 1 2 28 28 H 1.09007 * 109.46490 * 210.88149 * 3 2 1 29 29 H 1.09004 * 109.47102 * 90.88640 * 3 2 1 30 30 H 1.09002 * 109.47382 * 59.99956 * 5 4 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 5 4 3 32 32 H 1.09001 * 109.47194 * 299.99575 * 6 5 4 33 33 H 1.08992 * 109.47399 * 59.99748 * 6 5 4 34 34 H 1.09003 * 109.91441 * 273.87977 * 10 9 7 35 35 H 1.08994 * 109.91615 * 34.97113 * 10 9 7 36 36 H 1.08997 * 109.47168 * 53.54499 * 13 11 10 37 37 H 1.09003 * 109.47197 * 173.54520 * 13 11 10 38 38 H 0.97003 * 119.99943 * 359.97438 * 14 13 11 39 39 H 0.96996 * 119.99549 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.46922 * 60.00162 * 25 23 11 41 41 H 1.08992 * 109.47383 * 180.02562 * 25 23 11 42 42 H 1.09003 * 109.47411 * 300.00643 * 25 23 11 43 43 H 1.09003 * 110.66737 * 337.76533 * 26 9 7 44 44 H 1.08996 * 110.65943 * 100.88716 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1761 0.6556 5 6 4.5475 -1.2737 0.7110 6 6 4.9426 -2.5653 1.4297 7 6 6.4450 -2.6685 1.4875 8 8 7.1320 -1.7949 1.0022 9 7 7.0252 -3.7313 2.0796 10 6 8.4702 -3.9891 2.2229 11 6 8.6478 -4.8973 3.4539 12 1 9.1241 -5.8349 3.1671 13 6 9.4783 -4.1859 4.5239 14 7 10.8454 -3.9937 4.0333 15 6 11.7756 -3.3735 4.8239 16 1 11.5017 -3.0264 5.8093 17 6 13.0710 -3.1919 4.3593 18 7 13.4053 -3.6163 3.1590 19 14 14.3403 -2.3465 5.4381 20 1 13.7170 -1.9676 6.7316 21 1 15.4742 -3.2726 5.6869 22 1 14.8385 -1.1267 4.7530 23 6 7.2139 -5.1590 3.9698 24 1 6.9629 -4.4717 4.7776 25 6 7.0596 -6.6105 4.4285 26 6 6.3419 -4.8763 2.7245 27 1 -1.0498 -0.0003 0.0004 28 1 3.0089 0.8829 0.5275 29 1 3.0094 0.0167 -1.0276 30 1 4.9496 -0.4180 1.2534 31 1 4.9506 -1.2839 -0.3017 32 1 4.5395 -2.5555 2.4424 33 1 4.5407 -3.4207 0.8869 34 1 8.8476 -4.4923 1.3327 35 1 9.0020 -3.0494 2.3715 36 1 9.0321 -3.2164 4.7452 37 1 9.4992 -4.7915 5.4299 38 1 11.0915 -4.3058 3.1485 39 1 14.3105 -3.4897 2.8346 40 1 7.7658 -6.8141 5.2334 41 1 6.0431 -6.7721 4.7871 42 1 7.2600 -7.2793 3.5915 43 1 5.3286 -4.6032 3.0193 44 1 6.3306 -5.7408 2.0608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106115055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:58 Heat of formation + Delta-G solvation = -17.882195 kcal Electronic energy + Delta-G solvation = -23060.508095 eV Core-core repulsion = 19593.839315 eV Total energy + Delta-G solvation = -3466.668780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15355 -38.56306 -37.75950 -34.63797 -33.79121 -32.89097 -31.75825 -31.32518 -29.04759 -27.35260 -26.39011 -25.62722 -23.71563 -22.86729 -21.14369 -19.83139 -19.27239 -18.65509 -17.57722 -17.04919 -16.72215 -16.23938 -15.94069 -15.43070 -15.12462 -14.76518 -14.46811 -14.10357 -13.62255 -13.42297 -13.32263 -12.89893 -12.83963 -12.69551 -12.56074 -12.01576 -11.93973 -11.78582 -11.62752 -11.43081 -11.08253 -10.90278 -10.86534 -10.77608 -10.61290 -10.48989 -10.30135 -9.95776 -9.87435 -9.81174 -9.65066 -8.87185 -8.58096 -6.91033 -5.74768 -3.03613 2.10634 2.44320 2.65585 2.92862 3.45141 3.50551 3.52923 3.61314 4.17167 4.45841 4.53476 4.61836 4.76569 4.78026 4.86931 4.91741 5.04641 5.05112 5.22945 5.34155 5.39659 5.47020 5.51003 5.52162 5.56912 5.59077 5.60674 5.72610 5.78689 5.99078 6.08477 6.15337 6.19830 6.27883 6.42939 6.47434 6.72634 6.77695 6.87073 7.19658 7.60612 7.72205 8.18692 8.43818 9.55166 10.11998 10.46533 11.48114 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002750 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.925470 B =10180.696432 C =11203.207216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.133 4.133 7 C 0.533 3.467 8 O -0.539 6.539 9 N -0.618 5.618 10 C 0.111 3.889 11 C -0.103 4.103 12 H 0.087 0.913 13 C 0.163 3.837 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.101 4.101 24 H 0.084 0.916 25 C -0.139 4.139 26 C 0.102 3.898 27 H 0.222 0.778 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.405 -1.090 -4.255 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.191 4.191 3 C 0.097 3.903 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.173 4.173 7 C 0.321 3.679 8 O -0.417 6.417 9 N -0.352 5.352 10 C -0.011 4.011 11 C -0.122 4.122 12 H 0.105 0.895 13 C 0.035 3.965 14 N -0.377 5.377 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.120 4.120 24 H 0.102 0.898 25 C -0.197 4.197 26 C -0.021 4.021 27 H 0.238 0.762 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.099 -0.581 -4.354 24.496 hybrid contribution 0.852 0.455 0.193 0.985 sum -23.247 -0.126 -4.160 23.616 Atomic orbital electron populations 1.24966 0.95886 0.98461 1.00219 1.22594 0.93926 1.01671 1.00870 1.19063 0.84547 0.88832 0.97822 1.87851 1.21850 1.41924 1.79054 1.22186 0.79528 0.97454 1.00763 1.21415 0.92621 0.99558 1.03734 1.19915 0.89612 0.80467 0.77891 1.90753 1.65322 1.38821 1.46772 1.48806 1.08670 1.21055 1.56687 1.22187 0.79947 1.01377 0.97564 1.22389 0.94968 0.99287 0.95561 0.89513 1.20697 0.86041 0.96088 0.93680 1.42372 1.05341 1.71185 1.18776 1.19254 0.90318 1.29859 0.97588 0.91172 1.24748 0.97544 1.01815 0.96908 1.69667 1.18979 1.52078 1.17364 0.86116 0.81704 0.78879 0.79488 1.20585 1.21891 1.21857 1.22236 0.94834 0.98027 0.96943 0.89764 1.21726 1.01646 0.94610 1.01731 1.22618 0.96605 0.88849 0.94031 0.76168 0.90533 0.90578 0.91799 0.91895 0.88063 0.88157 0.91763 0.89075 0.96302 0.96025 0.78252 0.93559 0.91738 0.92659 0.92412 0.90303 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.19 -1.82 13.73 -37.12 -0.51 -2.33 16 3 C 0.17 1.52 6.41 34.37 0.22 1.74 16 4 O -0.39 -4.17 10.30 -35.23 -0.36 -4.53 16 5 C 0.08 0.82 5.23 37.16 0.19 1.01 16 6 C -0.13 -1.38 5.00 -27.88 -0.14 -1.52 16 7 C 0.53 7.73 7.89 -10.98 -0.09 7.64 16 8 O -0.54 -10.12 16.32 5.56 0.09 -10.03 16 9 N -0.62 -8.58 3.29 -169.96 -0.56 -9.14 16 10 C 0.11 1.84 6.31 -2.98 -0.02 1.82 16 11 C -0.10 -1.57 2.64 -89.24 -0.24 -1.81 16 12 H 0.09 1.33 7.85 -51.93 -0.41 0.92 16 13 C 0.16 3.22 5.35 -4.04 -0.02 3.19 16 14 N -0.73 -18.52 5.33 -59.90 -0.32 -18.84 16 15 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 19 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.10 -1.14 3.19 -88.91 -0.28 -1.43 16 24 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 25 C -0.14 -1.31 9.17 37.16 0.34 -0.96 16 26 C 0.10 1.03 6.39 -2.29 -0.01 1.02 16 27 H 0.22 0.87 7.80 -54.10 -0.42 0.45 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.10 0.91 7.90 -51.93 -0.41 0.50 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.87 7.49 -51.93 -0.39 1.48 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.38 10.17 7.51 -40.82 -0.31 9.86 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 43 H 0.08 0.62 7.23 -51.93 -0.38 0.24 16 44 H 0.07 0.66 8.02 -51.93 -0.42 0.25 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -34.59 372.48 -7.40 -41.98 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.33 Total: 4.88 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.23 Total: 0.12 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.15 Total: -55.78 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.27 Total: -14.56 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.59 -7.40 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106115055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.101 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds