Wall clock time and date at job start Tue Mar 31 2020 03:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47151 * 330.88223 * 3 2 1 5 5 C 1.42903 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.47480 * 127.03464 * 179.97438 * 9 7 6 11 11 C 1.54005 * 107.08392 * 154.52142 * 10 9 7 12 12 H 1.09001 * 110.32903 * 120.19727 * 11 10 9 13 13 C 1.53001 * 110.32657 * 242.31285 * 11 10 9 14 14 N 1.46505 * 109.47006 * 293.54526 * 13 11 10 15 15 C 1.36936 * 119.99857 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00261 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99732 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46992 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47119 * 119.99788 * 19 17 15 22 22 H 1.48504 * 109.46617 * 239.99812 * 19 17 15 23 23 C 1.54620 * 105.04566 * 1.30183 * 11 10 9 24 24 H 1.08994 * 110.74524 * 263.51451 * 23 11 10 25 25 C 1.53001 * 110.74037 * 140.36711 * 23 11 10 26 26 C 1.48119 * 127.02859 * 359.68854 * 9 7 6 27 27 H 4.38443 * 5.44454 * 179.97438 * 4 1 2 28 28 H 1.09007 * 109.46490 * 210.88149 * 3 2 1 29 29 H 1.09004 * 109.47102 * 90.88640 * 3 2 1 30 30 H 1.09002 * 109.47382 * 59.99956 * 5 4 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 5 4 3 32 32 H 1.09001 * 109.47194 * 299.99575 * 6 5 4 33 33 H 1.08992 * 109.47399 * 59.99748 * 6 5 4 34 34 H 1.09003 * 109.91441 * 273.87977 * 10 9 7 35 35 H 1.08994 * 109.91615 * 34.97113 * 10 9 7 36 36 H 1.08997 * 109.47168 * 53.54499 * 13 11 10 37 37 H 1.09003 * 109.47197 * 173.54520 * 13 11 10 38 38 H 0.97003 * 119.99943 * 359.97438 * 14 13 11 39 39 H 0.96996 * 119.99549 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.46922 * 60.00162 * 25 23 11 41 41 H 1.08992 * 109.47383 * 180.02562 * 25 23 11 42 42 H 1.09003 * 109.47411 * 300.00643 * 25 23 11 43 43 H 1.09003 * 110.66737 * 337.76533 * 26 9 7 44 44 H 1.08996 * 110.65943 * 100.88716 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1761 0.6556 5 6 4.5475 -1.2737 0.7110 6 6 4.9426 -2.5653 1.4297 7 6 6.4450 -2.6685 1.4875 8 8 7.1320 -1.7949 1.0022 9 7 7.0252 -3.7313 2.0796 10 6 8.4702 -3.9891 2.2229 11 6 8.6478 -4.8973 3.4539 12 1 9.1241 -5.8349 3.1671 13 6 9.4783 -4.1859 4.5239 14 7 10.8454 -3.9937 4.0333 15 6 11.7756 -3.3735 4.8239 16 1 11.5017 -3.0264 5.8093 17 6 13.0710 -3.1919 4.3593 18 7 13.4053 -3.6163 3.1590 19 14 14.3403 -2.3465 5.4381 20 1 13.7170 -1.9676 6.7316 21 1 15.4742 -3.2726 5.6869 22 1 14.8385 -1.1267 4.7530 23 6 7.2139 -5.1590 3.9698 24 1 6.9629 -4.4717 4.7776 25 6 7.0596 -6.6105 4.4285 26 6 6.3419 -4.8763 2.7245 27 1 -1.0498 -0.0003 0.0004 28 1 3.0089 0.8829 0.5275 29 1 3.0094 0.0167 -1.0276 30 1 4.9496 -0.4180 1.2534 31 1 4.9506 -1.2839 -0.3017 32 1 4.5395 -2.5555 2.4424 33 1 4.5407 -3.4207 0.8869 34 1 8.8476 -4.4923 1.3327 35 1 9.0020 -3.0494 2.3715 36 1 9.0321 -3.2164 4.7452 37 1 9.4992 -4.7915 5.4299 38 1 11.0915 -4.3058 3.1485 39 1 14.3105 -3.4897 2.8346 40 1 7.7658 -6.8141 5.2334 41 1 6.0431 -6.7721 4.7871 42 1 7.2600 -7.2793 3.5915 43 1 5.3286 -4.6032 3.0193 44 1 6.3306 -5.7408 2.0608 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106115055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:57 Heat of formation + Delta-G solvation = -41.312707 kcal Electronic energy + Delta-G solvation = -23061.524118 eV Core-core repulsion = 19593.839315 eV Total energy + Delta-G solvation = -3467.684804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28588 -39.50448 -38.80878 -36.46075 -34.49528 -34.18873 -33.07662 -32.56886 -30.55920 -28.16373 -27.24619 -27.11300 -25.28719 -24.12937 -22.43800 -21.00529 -20.32583 -19.37090 -19.15175 -18.39036 -17.61228 -17.27309 -16.94287 -16.67783 -16.37326 -15.92358 -15.67851 -15.41449 -15.21499 -14.91250 -14.52654 -14.00837 -13.94404 -13.71276 -13.55209 -13.24678 -13.13033 -12.89765 -12.79217 -12.72064 -12.50073 -12.47544 -12.11342 -11.96411 -11.85030 -11.54856 -11.48795 -11.46020 -11.36232 -11.02415 -10.95928 -10.59695 -9.75409 -9.02586 -7.97668 -5.26582 1.40344 1.44504 1.46217 1.54034 1.55984 1.82079 1.93326 2.53587 2.88369 3.35426 3.43001 3.55037 3.61496 3.73334 3.78442 4.00322 4.13884 4.20693 4.25933 4.29729 4.42460 4.44127 4.46859 4.57277 4.58980 4.67482 4.75867 4.76504 4.82493 4.91481 4.94650 5.02846 5.02977 5.12117 5.23186 5.27925 5.39670 5.46511 5.58492 6.02294 6.24785 6.52794 6.59406 7.06391 7.30879 8.06491 8.29365 9.26038 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002750 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.925470 B =10180.696432 C =11203.207216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.395 6.395 5 C 0.080 3.920 6 C -0.120 4.120 7 C 0.526 3.474 8 O -0.594 6.594 9 N -0.618 5.618 10 C 0.115 3.885 11 C -0.093 4.093 12 H 0.089 0.911 13 C 0.163 3.837 14 N -0.745 5.745 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.078 4.078 18 N -0.969 5.969 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.295 1.295 23 C -0.092 4.092 24 H 0.082 0.918 25 C -0.134 4.134 26 C 0.103 3.897 27 H 0.255 0.745 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.007 0.993 37 H 0.030 0.970 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.115 0.885 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.309 -2.186 -3.288 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.316 6.316 5 C 0.003 3.997 6 C -0.159 4.159 7 C 0.316 3.684 8 O -0.475 6.475 9 N -0.351 5.351 10 C -0.008 4.008 11 C -0.112 4.112 12 H 0.108 0.892 13 C 0.037 3.963 14 N -0.388 5.388 15 C -0.377 4.377 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.803 3.197 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.223 1.223 23 C -0.112 4.112 24 H 0.101 0.899 25 C -0.192 4.192 26 C -0.018 4.018 27 H 0.271 0.729 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.065 -1.707 -3.343 27.324 hybrid contribution 1.658 0.816 -0.105 1.851 sum -25.407 -0.891 -3.448 25.656 Atomic orbital electron populations 1.25862 0.96771 0.96519 0.98377 1.23027 0.94751 1.03520 1.02670 1.19223 0.84764 0.88482 0.98437 1.87810 1.21435 1.42904 1.79420 1.22086 0.79715 0.97448 1.00424 1.21366 0.88918 1.00278 1.05327 1.20745 0.91277 0.79588 0.76747 1.90728 1.66869 1.40819 1.49109 1.48917 1.07628 1.22076 1.56491 1.21910 0.81765 0.99028 0.98109 1.22270 0.97099 0.98163 0.93710 0.89250 1.20833 0.84057 0.96045 0.95404 1.42592 1.07128 1.70861 1.18183 1.19661 0.91081 1.29094 0.97902 0.90766 1.25603 0.99717 1.03281 0.98376 1.69824 1.19149 1.53835 1.19148 0.85059 0.78993 0.77388 0.78239 1.19012 1.21643 1.22268 1.22235 0.91711 0.99691 0.97525 0.89948 1.21703 1.03039 0.92777 1.01671 1.22918 0.97522 0.88075 0.93263 0.72899 0.89747 0.89552 0.92848 0.92470 0.85903 0.85535 0.92155 0.94070 0.97496 0.95202 0.79425 0.93993 0.92916 0.89906 0.91597 0.86704 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 19.25 74.32 1.43 -0.72 16 2 C -0.24 -4.31 13.73 31.13 0.43 -3.89 16 3 C 0.17 2.84 6.41 70.18 0.45 3.29 16 4 O -0.40 -8.05 10.30 -148.98 -1.53 -9.59 16 5 C 0.08 1.65 5.23 71.98 0.38 2.03 16 6 C -0.12 -2.21 5.00 29.85 0.15 -2.06 16 7 C 0.53 15.05 7.89 87.66 0.69 15.74 16 8 O -0.59 -23.26 16.32 -3.02 -0.05 -23.31 16 9 N -0.62 -16.57 3.29 -810.01 -2.67 -19.24 16 10 C 0.12 3.93 6.31 86.53 0.55 4.48 16 11 C -0.09 -2.82 2.64 -9.90 -0.03 -2.85 16 12 H 0.09 2.69 7.85 -2.39 -0.02 2.67 16 13 C 0.16 6.55 5.35 86.38 0.46 7.01 16 14 N -0.74 -38.86 5.33 -343.44 -1.83 -40.69 16 15 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 16 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 18 N -0.97 -60.96 13.06 21.65 0.28 -60.67 16 19 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 C -0.09 -1.85 3.19 -9.68 -0.03 -1.88 16 24 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 25 C -0.13 -2.04 9.17 71.98 0.66 -1.38 16 26 C 0.10 1.72 6.39 86.63 0.55 2.27 16 27 H 0.25 1.17 7.80 -4.43 -0.03 1.14 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.06 1.22 8.10 -2.39 -0.02 1.21 16 32 H 0.12 1.78 7.90 -2.39 -0.02 1.76 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.81 7.49 -2.39 -0.02 1.79 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.37 20.70 7.51 -92.71 -0.70 20.00 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 43 H 0.11 1.18 7.23 -2.39 -0.02 1.16 16 44 H 0.10 1.27 8.02 -2.39 -0.02 1.26 16 Total: -1.00 -78.57 372.48 3.50 -75.08 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.27 Total: 24.31 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.00 Total: 4.60 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.22 Total: -120.60 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.58 Total: -32.90 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -78.57 3.50 -75.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106115055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.764 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds