Wall clock time and date at job start Tue Mar 31 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.37154 * 2 1 4 4 C 1.54007 * 110.32644 * 237.81656 * 2 1 3 5 5 N 1.47484 * 107.08285 * 242.41137 * 4 2 1 6 6 C 1.34774 * 127.03387 * 154.50986 * 5 4 2 7 7 O 1.21281 * 120.00080 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00070 * 0.02562 * 6 5 4 9 9 H 1.09002 * 115.51231 * 325.37391 * 8 6 5 10 10 C 1.53002 * 117.43580 * 110.65731 * 8 6 5 11 11 H 1.08998 * 119.80394 * 355.36192 * 10 8 6 12 12 C 1.56577 * 116.77856 * 197.58626 * 10 8 6 13 13 O 1.44424 * 104.82717 * 273.06486 * 12 10 8 14 14 C 1.44423 * 105.27645 * 40.92928 * 13 12 10 15 15 C 1.53003 * 117.43562 * 180.02562 * 8 6 5 16 16 H 1.08999 * 119.80834 * 4.63435 * 15 8 6 17 17 C 1.48118 * 105.93455 * 334.54986 * 5 4 2 18 18 C 1.54611 * 110.33185 * 122.19403 * 2 1 3 19 19 H 1.09003 * 110.73966 * 22.21899 * 18 2 1 20 20 C 1.52998 * 110.74013 * 259.07947 * 18 2 1 21 21 N 1.46506 * 109.47370 * 174.99775 * 20 18 2 22 22 C 1.36929 * 119.99984 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00262 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00172 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00603 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99733 * 359.97438 * 24 22 21 27 27 H 1.48508 * 109.47218 * 90.00402 * 26 24 22 28 28 H 1.48499 * 109.47277 * 210.00122 * 26 24 22 29 29 H 1.48498 * 109.47114 * 330.00221 * 26 24 22 30 30 H 1.09004 * 109.46923 * 180.73669 * 1 2 3 31 31 H 1.09005 * 109.47286 * 300.72839 * 1 2 3 32 32 H 1.08999 * 109.47678 * 60.73169 * 1 2 3 33 33 H 1.09000 * 109.91446 * 1.77249 * 4 2 1 34 34 H 1.08997 * 109.91651 * 123.04905 * 4 2 1 35 35 H 1.09003 * 110.01175 * 154.40189 * 12 10 8 36 36 H 1.08999 * 110.80974 * 32.13120 * 12 10 8 37 37 H 1.08998 * 110.37897 * 200.66154 * 14 13 12 38 38 H 1.09002 * 110.37336 * 78.31314 * 14 13 12 39 39 H 1.08996 * 110.66106 * 280.85621 * 17 5 4 40 40 H 1.08999 * 110.80476 * 157.80373 * 17 5 4 41 41 H 1.08999 * 109.47406 * 294.99666 * 20 18 2 42 42 H 1.09007 * 109.47279 * 54.99602 * 20 18 2 43 43 H 0.96994 * 119.99784 * 359.97438 * 21 20 18 44 44 H 0.97006 * 120.00681 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0649 -0.7692 -1.2223 5 7 2.8277 -1.9223 -0.7086 6 6 3.0612 -3.0884 -1.3426 7 8 3.7090 -3.9563 -0.7967 8 6 2.5174 -3.3140 -2.7299 9 1 1.5487 -2.8579 -2.9343 10 6 3.5241 -3.3736 -3.8806 11 1 4.5791 -3.1793 -3.6880 12 6 2.9548 -3.1815 -5.3265 13 8 2.5514 -4.5041 -5.7436 14 6 1.9313 -5.0969 -4.5818 15 6 2.8172 -4.6591 -3.3945 16 1 3.3384 -5.4358 -2.8348 17 6 3.2837 -1.5370 0.6469 18 6 2.0672 -0.7724 1.2269 19 1 1.3164 -1.4662 1.6053 20 6 2.5096 0.1960 2.3256 21 7 2.9005 -0.5623 3.5167 22 6 3.3345 0.0965 4.6358 23 1 3.3883 1.1752 4.6408 24 6 3.7054 -0.6220 5.7641 25 7 4.1221 0.0112 6.8401 26 14 3.6117 -2.4876 5.7559 27 1 4.9030 -3.0460 5.2805 28 1 3.3380 -2.9756 7.1315 29 1 2.5197 -2.9244 4.8493 30 1 -0.3633 -1.0276 0.0132 31 1 -0.3634 0.5251 0.8834 32 1 -0.3634 0.5024 -0.8964 33 1 1.2334 -1.1173 -1.8350 34 1 2.7180 -0.1243 -1.8102 35 1 3.7329 -2.7966 -5.9856 36 1 2.0977 -2.5082 -5.3189 37 1 1.9233 -6.1834 -4.6686 38 1 0.9169 -4.7177 -4.4580 39 1 4.1553 -0.8852 0.5886 40 1 3.5046 -2.4199 1.2466 41 1 3.3584 0.7820 1.9733 42 1 1.6851 0.8642 2.5747 43 1 2.8511 -1.5310 3.5126 44 1 4.3809 -0.4908 7.6287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106556446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:59 Heat of formation + Delta-G solvation = -30.167673 kcal Electronic energy + Delta-G solvation = -23890.795786 eV Core-core repulsion = 20423.594267 eV Total energy + Delta-G solvation = -3467.201519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03735 -39.74306 -37.97877 -34.91318 -34.86833 -32.92116 -31.58362 -29.72658 -29.06810 -27.14900 -26.39724 -25.23833 -23.16925 -22.11177 -21.14615 -21.04770 -20.13494 -19.33897 -17.86649 -17.40732 -16.49604 -16.08435 -16.00226 -15.54040 -15.17838 -14.65663 -14.43676 -14.25891 -13.77826 -13.56814 -13.44858 -13.13896 -13.02587 -12.75014 -12.52292 -12.32266 -12.20338 -11.97777 -11.90603 -11.55161 -11.44434 -10.95804 -10.81701 -10.73115 -10.64409 -10.56045 -10.42496 -10.13165 -10.09647 -9.92510 -9.59865 -8.92037 -8.76610 -7.25765 -5.78113 -3.14171 2.19198 2.70225 3.22321 3.38876 3.42685 3.47016 3.57496 3.95280 4.15514 4.35300 4.39004 4.45094 4.52257 4.59159 4.65028 4.73565 4.76892 4.90501 5.12057 5.21525 5.22873 5.29437 5.32152 5.35584 5.38267 5.51854 5.56938 5.61627 5.66510 5.66794 5.73150 5.87929 5.95286 6.00751 6.06240 6.13352 6.24749 6.32566 6.57780 6.68325 7.42904 7.96860 8.01696 8.40667 9.19265 9.91896 10.10876 11.40132 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.003389 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.675767 B = 8261.108184 C = 9047.580533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.106 3.894 5 N -0.615 5.615 6 C 0.559 3.441 7 O -0.537 6.537 8 C -0.146 4.146 9 H 0.123 0.877 10 C -0.165 4.165 11 H 0.131 0.869 12 C 0.075 3.925 13 O -0.371 6.371 14 C 0.074 3.926 15 C -0.163 4.163 16 H 0.135 0.865 17 C 0.111 3.889 18 C -0.107 4.107 19 H 0.083 0.917 20 C 0.169 3.831 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.361 0.639 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -3.801 -26.066 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.017 4.017 5 N -0.349 5.349 6 C 0.347 3.653 7 O -0.414 6.414 8 C -0.167 4.167 9 H 0.141 0.859 10 C -0.184 4.184 11 H 0.149 0.851 12 C -0.002 4.002 13 O -0.289 6.289 14 C -0.002 4.002 15 C -0.181 4.181 16 H 0.153 0.847 17 C -0.010 4.010 18 C -0.127 4.127 19 H 0.102 0.898 20 C 0.042 3.958 21 N -0.402 5.402 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.862 -4.274 -25.891 27.123 hybrid contribution -0.059 -1.114 0.539 1.239 sum -6.921 -5.388 -25.351 26.826 Atomic orbital electron populations 1.21842 0.94019 1.01940 1.02141 1.22091 0.96460 0.99897 0.93521 0.89080 1.22255 0.95365 0.87329 0.96796 1.48747 1.53382 1.14456 1.18274 1.19056 0.79875 0.80527 0.85844 1.90737 1.40476 1.42718 1.67463 1.22365 1.00965 1.01836 0.91501 0.85942 1.24656 0.98917 1.02464 0.92363 0.85143 1.23326 0.99207 0.85430 0.92257 1.89196 1.78255 1.27959 1.33540 1.22964 0.95049 0.99671 0.82554 1.24199 1.02432 0.91275 1.00240 0.84736 1.22626 0.97091 0.99949 0.81349 1.22641 0.96989 0.97999 0.95028 0.89838 1.20612 0.97236 0.92567 0.85425 1.42731 1.80888 1.04561 1.12052 1.19032 1.35916 0.93166 0.89442 0.89168 1.24661 1.01101 0.97286 0.95931 1.69697 1.50453 1.34386 1.03604 0.86585 0.78021 0.87296 0.76848 1.20922 1.21653 1.20371 0.92712 0.91680 0.92598 0.90887 0.91244 0.88111 0.91479 0.87960 0.91673 0.90248 0.89726 0.95171 0.95006 0.80631 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.89 37.16 0.33 -0.95 16 2 C -0.10 -1.03 3.17 -89.25 -0.28 -1.31 16 3 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 4 C 0.11 0.98 6.42 -2.98 -0.02 0.96 16 5 N -0.62 -7.86 3.29 -169.77 -0.56 -8.42 16 6 C 0.56 7.68 7.67 -10.99 -0.08 7.59 16 7 O -0.54 -9.64 16.55 5.56 0.09 -9.55 16 8 C -0.15 -1.41 5.10 -91.77 -0.47 -1.87 16 9 H 0.12 0.92 7.15 -51.93 -0.37 0.55 16 10 C -0.17 -1.43 7.09 -87.88 -0.62 -2.05 16 11 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 12 C 0.07 0.53 7.48 39.08 0.29 0.82 16 13 O -0.37 -3.44 11.65 -35.23 -0.41 -3.85 16 14 C 0.07 0.57 7.44 37.93 0.28 0.85 16 15 C -0.16 -1.54 6.60 -89.03 -0.59 -2.13 16 16 H 0.13 1.46 7.81 -51.93 -0.41 1.06 16 17 C 0.11 1.68 6.45 -2.13 -0.01 1.66 16 18 C -0.11 -1.52 2.62 -88.75 -0.23 -1.76 16 19 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 20 C 0.17 3.05 5.58 -4.04 -0.02 3.03 16 21 N -0.76 -17.72 5.33 -59.91 -0.32 -18.04 16 22 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 23 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 26 Si 0.88 22.54 27.74 -169.99 -4.71 17.83 16 27 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 30 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.53 6.60 -51.93 -0.34 0.19 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 40 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 41 H 0.03 0.55 7.99 -51.93 -0.42 0.13 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -34.36 354.10 -8.70 -43.05 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.21 Total: 4.48 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.68 Total: -2.15 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.10 Total: -55.14 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.32 Total: -13.40 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.36 -8.70 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106556446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.885 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds