Wall clock time and date at job start Tue Mar 31 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99973 * 2 1 4 4 C 1.53000 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.50708 * 115.55076 * 294.88072 * 4 3 2 6 6 O 1.21273 * 119.99929 * 124.17901 * 5 4 3 7 7 N 1.34781 * 119.99522 * 304.17930 * 5 4 3 8 8 C 1.46496 * 119.99471 * 175.05774 * 7 5 4 9 9 H 1.09007 * 110.55991 * 34.29573 * 8 7 5 10 10 C 1.54854 * 110.76435 * 271.30650 * 8 7 5 11 11 C 1.55850 * 103.44353 * 241.44742 * 10 8 7 12 12 H 1.08999 * 115.55845 * 159.56383 * 11 10 8 13 13 C 1.55840 * 105.06266 * 288.17266 * 11 10 8 14 14 C 1.54850 * 103.44975 * 71.82504 * 13 11 10 15 15 C 1.55843 * 110.62626 * 157.20001 * 8 7 5 16 16 H 1.08996 * 115.56060 * 319.07792 * 15 8 7 17 17 N 1.50230 * 101.05124 * 85.71067 * 15 8 7 18 18 C 1.36939 * 130.84228 * 233.94624 * 17 15 8 19 19 H 1.08006 * 119.99267 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00604 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00425 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47484 * 89.99914 * 22 20 18 24 24 H 1.48500 * 109.47198 * 210.00599 * 22 20 18 25 25 H 1.48505 * 109.46675 * 329.99873 * 22 20 18 26 26 C 1.53001 * 117.49996 * 80.55211 * 4 3 2 27 27 C 1.52999 * 117.49967 * 149.21432 * 4 3 2 28 28 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 299.99262 * 1 2 3 30 30 H 1.09002 * 109.47229 * 59.99491 * 1 2 3 31 31 H 1.09000 * 109.46652 * 60.00628 * 3 2 1 32 32 H 1.08995 * 109.47518 * 300.00817 * 3 2 1 33 33 H 0.96995 * 120.00562 * 355.05533 * 7 5 4 34 34 H 1.08999 * 110.62498 * 359.93066 * 10 8 7 35 35 H 1.08995 * 110.62884 * 122.95822 * 10 8 7 36 36 H 1.09007 * 110.62705 * 313.33240 * 13 11 10 37 37 H 1.09004 * 110.76309 * 190.38130 * 13 11 10 38 38 H 1.09000 * 110.62824 * 241.51182 * 14 13 11 39 39 H 1.08997 * 110.76805 * 118.55389 * 14 13 11 40 40 H 0.97000 * 120.00491 * 180.02562 * 21 20 18 41 41 H 1.09003 * 117.49755 * 215.00361 * 26 4 3 42 42 H 1.08998 * 117.49701 * 0.02562 * 26 4 3 43 43 H 1.09003 * 117.49546 * 359.97305 * 27 4 3 44 44 H 1.08996 * 117.50096 * 144.97329 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1388 0.5629 1.2325 6 8 4.8581 -0.4082 1.1319 7 7 3.8788 1.0862 2.4471 8 6 4.3755 0.4196 3.6533 9 1 5.3427 -0.0457 3.4628 10 6 3.3558 -0.6299 4.1600 11 6 2.9782 -0.1119 5.5805 12 1 2.0374 -0.4870 5.9832 13 6 4.2387 -0.3787 6.4572 14 6 5.2585 0.6707 5.9506 15 6 4.4752 1.4287 4.8367 16 1 4.8587 2.4165 4.5813 17 7 3.0759 1.3739 5.3805 18 6 2.1687 2.3712 5.6206 19 1 2.4269 3.3984 5.4090 20 6 0.9171 2.0620 6.1348 21 7 0.6022 0.8102 6.3922 22 14 -0.3206 3.4224 6.4617 23 1 -1.1478 3.6412 5.2480 24 1 -1.1976 3.0321 7.5947 25 1 0.3998 4.6756 6.8023 26 6 4.2216 0.9071 -1.3397 27 6 4.3314 2.2913 -0.6954 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8898 33 1 3.3628 1.9040 2.5225 34 1 2.4778 -0.6550 3.5146 35 1 3.8173 -1.6155 4.2208 36 1 4.6138 -1.3890 6.2931 37 1 4.0163 -0.2197 7.5124 38 1 6.1392 0.1809 5.5352 39 1 5.5421 1.3524 6.7523 40 1 -0.2726 0.5940 6.7512 41 1 5.1093 0.2747 -1.3288 42 1 3.5864 0.8109 -2.2202 43 1 3.7685 3.1052 -1.1524 44 1 5.2913 2.5698 -0.2604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110806138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:37 Heat of formation + Delta-G solvation = -10.440011 kcal Electronic energy + Delta-G solvation = -25216.645775 eV Core-core repulsion = 21750.299712 eV Total energy + Delta-G solvation = -3466.346063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07454 -38.89462 -37.52443 -35.99985 -33.68180 -32.51078 -29.11504 -28.92793 -28.36217 -27.60954 -25.57805 -24.26561 -23.25636 -22.48725 -20.84614 -19.79813 -19.14257 -18.52286 -17.10711 -16.98650 -16.18716 -15.86613 -15.52246 -15.24869 -14.82201 -14.43074 -14.13505 -13.91973 -13.60458 -13.32994 -12.90430 -12.44238 -12.09576 -12.02240 -11.82445 -11.62972 -11.38851 -11.19209 -11.10257 -10.94166 -10.92240 -10.63196 -10.47332 -10.35821 -10.26603 -10.10857 -9.89978 -9.64605 -9.51954 -9.20499 -9.08726 -8.95916 -8.36330 -6.94867 -5.75236 -3.14146 2.91205 3.33085 3.38807 3.41059 3.42454 3.64574 4.06495 4.39059 4.64329 4.85544 4.91545 5.06759 5.14273 5.25993 5.35548 5.41551 5.49311 5.50586 5.63438 5.66496 5.73030 5.77470 5.79686 5.84602 5.89336 6.08373 6.08611 6.16550 6.18105 6.35423 6.46005 6.53161 6.63337 6.78334 6.86837 6.98980 7.18012 7.19254 7.37417 7.46793 7.79888 8.09284 8.16120 8.72543 9.06447 9.69476 10.51635 11.33861 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.006056 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.993524 B = 4622.711813 C = 5727.494251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.104 3.896 4 C -0.160 4.160 5 C 0.554 3.446 6 O -0.548 6.548 7 N -0.700 5.700 8 C 0.129 3.871 9 H 0.078 0.922 10 C -0.143 4.143 11 C 0.157 3.843 12 H 0.151 0.849 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.126 3.874 16 H 0.087 0.913 17 N -0.590 5.590 18 C -0.214 4.214 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.137 4.137 27 C -0.150 4.150 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.401 0.599 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 1.985 -11.456 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.027 3.973 4 C -0.164 4.164 5 C 0.339 3.661 6 O -0.426 6.426 7 N -0.349 5.349 8 C 0.023 3.977 9 H 0.096 0.904 10 C -0.183 4.183 11 C 0.050 3.950 12 H 0.168 0.832 13 C -0.179 4.179 14 C -0.168 4.168 15 C 0.017 3.983 16 H 0.105 0.895 17 N -0.310 5.310 18 C -0.342 4.342 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.174 4.174 27 C -0.188 4.188 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.299 1.242 -11.378 12.226 hybrid contribution -1.208 1.287 0.267 1.786 sum 3.091 2.530 -11.110 11.806 Atomic orbital electron populations 1.22749 0.80841 1.02896 0.99978 1.87954 1.19662 1.27027 1.95351 1.21875 0.89205 0.85423 1.00801 1.21404 0.93942 1.06457 0.94554 1.19180 0.80082 0.83276 0.83517 1.90633 1.38353 1.27035 1.86608 1.45885 1.55260 1.28561 1.05183 1.22618 0.96745 0.94631 0.83713 0.90419 1.23457 0.98016 0.96303 1.00535 1.23678 0.97633 0.83301 0.90351 0.83241 1.23067 0.97963 0.96373 1.00448 1.22881 0.97009 0.98303 0.98606 1.23142 0.88083 0.95411 0.91643 0.89503 1.46494 1.09100 1.02881 1.72555 1.18990 0.92403 0.87025 1.35743 0.90471 1.24691 0.97596 0.96368 1.01921 1.69498 1.21218 1.15753 1.50165 0.86095 0.81220 0.80768 0.77508 1.21821 1.21692 1.20812 1.22936 1.02684 0.97952 0.93836 1.23066 1.01135 0.92311 1.02264 0.89599 0.93493 0.94430 0.92047 0.92708 0.76483 0.92093 0.92941 0.93345 0.92663 0.93030 0.92482 0.93578 0.87558 0.88077 0.87839 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.11 10.63 -35.23 -0.37 -6.48 16 3 C 0.10 1.42 5.74 37.16 0.21 1.63 16 4 C -0.16 -2.28 2.18 -155.66 -0.34 -2.62 16 5 C 0.55 10.02 7.09 -10.98 -0.08 9.94 16 6 O -0.55 -11.69 16.13 5.56 0.09 -11.60 16 7 N -0.70 -12.64 5.06 -51.39 -0.26 -12.90 16 8 C 0.13 2.50 2.80 -65.44 -0.18 2.32 16 9 H 0.08 1.52 7.23 -51.93 -0.38 1.15 16 10 C -0.14 -3.03 6.23 -24.23 -0.15 -3.18 16 11 C 0.16 3.61 4.69 -62.80 -0.29 3.32 16 12 H 0.15 3.94 5.57 -51.93 -0.29 3.65 16 13 C -0.14 -2.79 6.44 -24.24 -0.16 -2.95 16 14 C -0.13 -2.35 6.44 -24.23 -0.16 -2.51 16 15 C 0.13 2.47 5.05 -62.80 -0.32 2.15 16 16 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 17 N -0.59 -13.93 2.98 -145.82 -0.44 -14.37 16 18 C -0.21 -5.53 10.59 -15.06 -0.16 -5.69 16 19 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -25.63 10.48 55.49 0.58 -25.05 16 22 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.14 -1.66 9.76 -26.69 -0.26 -1.92 16 27 C -0.15 -1.61 9.93 -26.69 -0.26 -1.87 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 32 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.40 6.98 8.41 -40.82 -0.34 6.64 16 34 H 0.06 1.42 7.98 -51.93 -0.41 1.01 16 35 H 0.05 1.05 7.82 -51.93 -0.41 0.65 16 36 H 0.05 0.88 7.82 -51.92 -0.41 0.47 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.11 1.41 7.84 -51.93 -0.41 1.00 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -30.79 355.51 -8.42 -39.21 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.23 Total: 9.90 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.13 Total: -0.22 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.11 Total: -52.31 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.28 Total: -18.08 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.79 -8.42 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110806138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.774 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds