Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99742 * 2 1 4 4 O 1.42899 * 109.47355 * 135.00087 * 3 2 1 5 5 C 1.42899 * 114.00265 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47143 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27800 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.54183 * 111.61567 * 298.58052 * 9 8 6 11 11 C 1.56221 * 103.64724 * 260.32760 * 10 9 8 12 12 C 1.54846 * 103.17960 * 322.66106 * 11 10 9 13 13 C 1.54182 * 104.29905 * 37.76515 * 12 11 10 14 14 H 1.08998 * 112.24954 * 98.79044 * 13 12 11 15 15 C 1.53799 * 109.12323 * 223.08391 * 13 12 11 16 16 N 1.47221 * 106.35480 * 132.67210 * 15 13 12 17 17 C 1.36942 * 126.70322 * 148.74098 * 16 15 13 18 18 H 1.08000 * 120.00378 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99651 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99775 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46855 * 90.00456 * 21 19 17 23 23 H 1.48501 * 109.47198 * 210.00371 * 21 19 17 24 24 H 1.48491 * 109.47276 * 330.00764 * 21 19 17 25 25 C 1.47219 * 106.60063 * 328.76907 * 16 15 13 26 26 H 1.07997 * 120.00015 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99989 * 0.02562 * 1 2 3 28 28 H 1.07992 * 119.99981 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47368 * 14.99744 * 3 2 1 30 30 H 1.09009 * 109.47010 * 254.99657 * 3 2 1 31 31 H 1.09009 * 109.46798 * 59.99573 * 5 4 3 32 32 H 1.08998 * 109.46844 * 300.00077 * 5 4 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 34 34 H 1.08994 * 110.46772 * 20.30209 * 10 9 8 35 35 H 1.09003 * 110.46694 * 142.89304 * 10 9 8 36 36 H 1.08996 * 110.86618 * 204.04985 * 11 10 9 37 37 H 1.09000 * 110.38755 * 81.04415 * 11 10 9 38 38 H 1.09008 * 110.46867 * 279.06147 * 12 11 10 39 39 H 1.09005 * 110.46986 * 156.47267 * 12 11 10 40 40 H 1.08989 * 110.07998 * 13.44819 * 15 13 12 41 41 H 1.09003 * 110.12294 * 251.91592 * 15 13 12 42 42 H 0.97008 * 119.99638 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.07258 * 272.01077 * 25 16 15 44 44 H 1.08992 * 110.13137 * 150.48464 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9084 2.4351 1.0320 6 6 4.9939 2.2571 2.0621 7 8 5.0885 1.2112 2.6688 8 7 5.8558 3.2623 2.3133 9 6 6.9073 3.0914 3.3189 10 6 6.3170 2.8319 4.7195 11 6 6.3961 4.2274 5.4172 12 6 7.7353 4.8062 4.8982 13 6 7.8041 4.3473 3.4278 14 1 7.4890 5.1287 2.7364 15 6 9.2290 3.8577 3.1190 16 7 9.0828 2.5684 2.4235 17 6 9.9199 2.0532 1.4701 18 1 9.7078 1.0909 1.0281 19 6 11.0413 2.7680 1.0716 20 7 11.3001 3.9405 1.6106 21 14 12.1836 2.0649 -0.2285 22 1 11.7323 2.5039 -1.5735 23 1 13.5662 2.5503 0.0126 24 1 12.1603 0.5819 -0.1582 25 6 7.8605 1.9413 2.9527 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4868 -0.9927 31 1 3.2688 3.2698 1.3191 32 1 4.3586 2.6397 0.0607 33 1 5.7798 4.0989 1.8282 34 1 5.2900 2.4754 4.6402 35 1 6.9297 2.1136 5.2642 36 1 6.4166 4.1187 6.5015 37 1 5.5591 4.8540 5.1090 38 1 8.5722 4.3975 5.4646 39 1 7.7288 5.8946 4.9579 40 1 9.7871 3.7221 4.0453 41 1 9.7404 4.5739 2.4758 42 1 12.0835 4.4401 1.3319 43 1 8.0956 1.3534 3.8399 44 1 7.4057 1.3059 2.1929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111658958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -29.585102 kcal Electronic energy + Delta-G solvation = -24434.111833 eV Core-core repulsion = 20966.935576 eV Total energy + Delta-G solvation = -3467.176256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20594 -38.58765 -37.35846 -34.47687 -34.02103 -33.36113 -31.40860 -29.68902 -28.65695 -27.28209 -25.62037 -24.70160 -24.22970 -21.47622 -20.32026 -20.25298 -19.39425 -18.82283 -17.27820 -17.02825 -16.42678 -16.31503 -15.49072 -15.29616 -14.87451 -14.72329 -14.23620 -13.94653 -13.62391 -13.46302 -13.16804 -12.69129 -12.44990 -12.32005 -12.21648 -11.61906 -11.42306 -11.22223 -11.18869 -10.96964 -10.78287 -10.70833 -10.56674 -10.26696 -10.21145 -10.13155 -9.92238 -9.73420 -9.56902 -9.49154 -9.27843 -8.72430 -8.53605 -6.83953 -5.62609 -3.06931 1.88779 2.90418 3.05203 3.40217 3.45683 3.48067 4.05005 4.49501 4.71302 4.83265 4.86592 4.96869 5.01028 5.07702 5.10411 5.21631 5.25683 5.28288 5.49806 5.60445 5.70287 5.80002 5.85705 5.91365 6.02338 6.07690 6.17296 6.27644 6.31388 6.37443 6.44008 6.48468 6.58596 6.70875 6.79052 6.86875 6.93567 7.21356 7.47718 7.63618 7.79944 7.89587 8.40965 8.56499 9.23247 9.83565 10.51452 11.38313 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004339 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.294089 B = 6450.982643 C = 8017.592580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.512 3.488 7 O -0.517 6.517 8 N -0.704 5.704 9 C 0.163 3.837 10 C -0.118 4.118 11 C -0.124 4.124 12 C -0.113 4.113 13 C -0.111 4.111 14 H 0.074 0.926 15 C 0.139 3.861 16 N -0.598 5.598 17 C -0.214 4.214 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.135 3.865 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.012 0.988 41 H 0.123 0.877 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 2.396 0.238 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C 0.009 3.991 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.296 3.704 7 O -0.391 6.391 8 N -0.356 5.356 9 C 0.076 3.924 10 C -0.157 4.157 11 C -0.161 4.161 12 C -0.151 4.151 13 C -0.132 4.132 14 H 0.092 0.908 15 C 0.014 3.986 16 N -0.321 5.321 17 C -0.342 4.342 18 H 0.095 0.905 19 C -0.209 4.209 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.007 3.993 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.140 0.860 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.478 1.471 0.659 17.553 hybrid contribution 0.464 0.295 -1.142 1.268 sum -17.014 1.767 -0.483 17.113 Atomic orbital electron populations 1.23811 0.95486 1.02197 1.00608 1.22751 0.95602 0.98343 0.99692 1.21608 0.88869 0.96027 0.92590 1.88052 1.44164 1.35178 1.60196 1.22249 0.93305 0.88874 0.99231 1.20048 0.82394 0.84322 0.83623 1.90721 1.72177 1.26649 1.49592 1.45890 1.31597 1.16615 1.41544 1.21769 0.86266 0.97711 0.86664 1.22891 1.01483 0.96842 0.94466 1.22757 0.97590 0.96484 0.99290 1.22428 0.97297 0.99787 0.95582 1.22996 0.99158 0.95088 0.95941 0.90761 1.22081 0.89734 0.90205 0.96605 1.44592 1.24737 1.18423 1.44395 1.19127 1.01777 1.01475 1.11835 0.90501 1.24755 0.98512 0.97147 1.00446 1.69599 1.28660 1.13524 1.45500 0.86051 0.80068 0.78184 0.81125 1.21690 1.21645 1.20736 1.21692 0.87202 0.93094 0.97282 0.87784 0.88496 0.86354 0.92715 0.92081 0.90621 0.90277 0.76970 0.91122 0.90858 0.92082 0.92297 0.91047 0.92034 0.97001 0.85982 0.93739 0.95585 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 14.31 29.01 0.42 -1.04 16 2 C -0.15 -1.44 9.89 -36.02 -0.36 -1.79 16 3 C 0.09 0.87 6.35 36.01 0.23 1.10 16 4 O -0.36 -5.10 9.86 -55.14 -0.54 -5.64 16 5 C 0.04 0.54 6.42 36.01 0.23 0.77 16 6 C 0.51 8.44 6.89 -10.98 -0.08 8.37 16 7 O -0.52 -10.67 14.00 -14.36 -0.20 -10.88 16 8 N -0.70 -11.08 5.23 -45.83 -0.24 -11.32 16 9 C 0.16 2.97 0.94 -129.89 -0.12 2.85 16 10 C -0.12 -1.95 5.75 -24.38 -0.14 -2.09 16 11 C -0.12 -1.71 6.92 -24.03 -0.17 -1.88 16 12 C -0.11 -1.73 6.38 -25.14 -0.16 -1.89 16 13 C -0.11 -2.03 3.67 -88.69 -0.33 -2.36 16 14 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 15 C 0.14 3.31 5.77 -3.23 -0.02 3.29 16 16 N -0.60 -15.56 3.39 -171.10 -0.58 -16.14 16 17 C -0.21 -6.06 10.34 -15.05 -0.16 -6.22 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 20 N -0.92 -26.57 10.08 55.49 0.56 -26.01 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.13 3.08 6.00 -3.23 -0.02 3.06 16 26 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 27 H 0.10 0.64 7.90 -52.48 -0.41 0.23 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.05 0.45 7.86 -51.93 -0.41 0.05 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.40 5.11 8.28 -40.82 -0.34 4.77 16 34 H 0.07 1.20 6.69 -51.93 -0.35 0.86 16 35 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.17 7.17 -51.92 -0.37 0.79 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.01 0.30 7.12 -51.94 -0.37 -0.07 16 41 H 0.12 3.26 5.45 -51.93 -0.28 2.98 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 44 H 0.05 1.19 6.73 -51.93 -0.35 0.84 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -33.17 348.87 -8.49 -41.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.95 Total: 4.21 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.76 Total: 1.66 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.26 Total: -53.48 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.74 Total: -16.51 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.17 -8.49 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111658958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.073 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds