Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99742 * 2 1 4 4 O 1.42899 * 109.47355 * 135.00087 * 3 2 1 5 5 C 1.42899 * 114.00265 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47143 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27800 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.54183 * 111.61567 * 298.58052 * 9 8 6 11 11 C 1.56221 * 103.64724 * 260.32760 * 10 9 8 12 12 C 1.54846 * 103.17960 * 322.66106 * 11 10 9 13 13 C 1.54182 * 104.29905 * 37.76515 * 12 11 10 14 14 H 1.08998 * 112.24954 * 98.79044 * 13 12 11 15 15 C 1.53799 * 109.12323 * 223.08391 * 13 12 11 16 16 N 1.47221 * 106.35480 * 132.67210 * 15 13 12 17 17 C 1.36942 * 126.70322 * 148.74098 * 16 15 13 18 18 H 1.08000 * 120.00378 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99651 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99775 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46855 * 90.00456 * 21 19 17 23 23 H 1.48501 * 109.47198 * 210.00371 * 21 19 17 24 24 H 1.48491 * 109.47276 * 330.00764 * 21 19 17 25 25 C 1.47219 * 106.60063 * 328.76907 * 16 15 13 26 26 H 1.07997 * 120.00015 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99989 * 0.02562 * 1 2 3 28 28 H 1.07992 * 119.99981 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47368 * 14.99744 * 3 2 1 30 30 H 1.09009 * 109.47010 * 254.99657 * 3 2 1 31 31 H 1.09009 * 109.46798 * 59.99573 * 5 4 3 32 32 H 1.08998 * 109.46844 * 300.00077 * 5 4 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 34 34 H 1.08994 * 110.46772 * 20.30209 * 10 9 8 35 35 H 1.09003 * 110.46694 * 142.89304 * 10 9 8 36 36 H 1.08996 * 110.86618 * 204.04985 * 11 10 9 37 37 H 1.09000 * 110.38755 * 81.04415 * 11 10 9 38 38 H 1.09008 * 110.46867 * 279.06147 * 12 11 10 39 39 H 1.09005 * 110.46986 * 156.47267 * 12 11 10 40 40 H 1.08989 * 110.07998 * 13.44819 * 15 13 12 41 41 H 1.09003 * 110.12294 * 251.91592 * 15 13 12 42 42 H 0.97008 * 119.99638 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.07258 * 272.01077 * 25 16 15 44 44 H 1.08992 * 110.13137 * 150.48464 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9084 2.4351 1.0320 6 6 4.9939 2.2571 2.0621 7 8 5.0885 1.2112 2.6688 8 7 5.8558 3.2623 2.3133 9 6 6.9073 3.0914 3.3189 10 6 6.3170 2.8319 4.7195 11 6 6.3961 4.2274 5.4172 12 6 7.7353 4.8062 4.8982 13 6 7.8041 4.3473 3.4278 14 1 7.4890 5.1287 2.7364 15 6 9.2290 3.8577 3.1190 16 7 9.0828 2.5684 2.4235 17 6 9.9199 2.0532 1.4701 18 1 9.7078 1.0909 1.0281 19 6 11.0413 2.7680 1.0716 20 7 11.3001 3.9405 1.6106 21 14 12.1836 2.0649 -0.2285 22 1 11.7323 2.5039 -1.5735 23 1 13.5662 2.5503 0.0126 24 1 12.1603 0.5819 -0.1582 25 6 7.8605 1.9413 2.9527 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4868 -0.9927 31 1 3.2688 3.2698 1.3191 32 1 4.3586 2.6397 0.0607 33 1 5.7798 4.0989 1.8282 34 1 5.2900 2.4754 4.6402 35 1 6.9297 2.1136 5.2642 36 1 6.4166 4.1187 6.5015 37 1 5.5591 4.8540 5.1090 38 1 8.5722 4.3975 5.4646 39 1 7.7288 5.8946 4.9579 40 1 9.7871 3.7221 4.0453 41 1 9.7404 4.5739 2.4758 42 1 12.0835 4.4401 1.3319 43 1 8.0956 1.3534 3.8399 44 1 7.4057 1.3059 2.1929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111658958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -51.646334 kcal Electronic energy + Delta-G solvation = -24435.068479 eV Core-core repulsion = 20966.935576 eV Total energy + Delta-G solvation = -3468.132903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62858 -39.82313 -38.50788 -36.30634 -34.76926 -34.69309 -33.40382 -31.16291 -30.06193 -28.66838 -26.61816 -26.33304 -25.90973 -22.94909 -21.87903 -21.16842 -20.60719 -20.28819 -19.05334 -18.10897 -17.75567 -17.33694 -16.97990 -16.68354 -16.27177 -16.06329 -15.56470 -15.41899 -15.14657 -14.88715 -14.31134 -14.14868 -13.90399 -13.42382 -13.21346 -13.18986 -13.15854 -12.86598 -12.79943 -12.46921 -12.28097 -12.03519 -11.88708 -11.85479 -11.78271 -11.66126 -11.41555 -11.23985 -10.97009 -10.79940 -10.66295 -10.25475 -9.99842 -8.93141 -7.77220 -5.25861 1.19980 1.44420 1.46061 1.55226 1.64345 1.95824 2.46648 3.09777 3.28142 3.45307 3.56904 3.79276 3.85706 4.02377 4.07938 4.16693 4.23297 4.29580 4.36810 4.43128 4.46693 4.48737 4.60789 4.61186 4.74601 4.82083 4.85382 4.96179 4.98448 5.06106 5.13058 5.23312 5.29222 5.40836 5.50793 5.59856 5.65827 5.68761 5.73408 5.80482 6.11267 6.35157 6.64965 7.09124 7.32405 7.73207 8.41208 9.20425 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004339 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.294089 B = 6450.982643 C = 8017.592580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.083 3.917 4 O -0.396 6.396 5 C 0.050 3.950 6 C 0.505 3.495 7 O -0.567 6.567 8 N -0.696 5.696 9 C 0.172 3.828 10 C -0.115 4.115 11 C -0.107 4.107 12 C -0.108 4.108 13 C -0.100 4.100 14 H 0.094 0.906 15 C 0.142 3.858 16 N -0.618 5.618 17 C -0.241 4.241 18 H 0.068 0.932 19 C -0.059 4.059 20 N -0.941 5.941 21 Si 0.980 3.020 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.136 3.864 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.413 0.587 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.090 0.910 40 H -0.011 1.011 41 H 0.095 0.905 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.998 4.307 -0.186 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.008 3.992 4 O -0.316 6.316 5 C -0.029 4.029 6 C 0.292 3.708 7 O -0.445 6.445 8 N -0.349 5.349 9 C 0.084 3.916 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.120 4.120 14 H 0.112 0.888 15 C 0.017 3.983 16 N -0.342 5.342 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.808 3.192 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.009 3.991 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.007 0.993 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -19.688 3.416 0.223 19.983 hybrid contribution 1.139 -0.387 -1.024 1.580 sum -18.549 3.028 -0.801 18.811 Atomic orbital electron populations 1.24054 0.94770 1.03609 0.97583 1.22787 0.96474 0.97968 1.02564 1.21807 0.88320 0.96789 0.92333 1.88006 1.45482 1.36441 1.61635 1.22294 0.92604 0.89577 0.98457 1.20915 0.82866 0.83353 0.83707 1.90698 1.73587 1.28576 1.51639 1.45756 1.30542 1.17473 1.41126 1.21506 0.86283 0.95512 0.88303 1.22825 1.00575 0.98613 0.93385 1.22699 0.97291 0.94249 1.00188 1.22393 0.97787 1.01544 0.92883 1.22880 0.95171 0.95265 0.98707 0.88794 1.21941 0.93023 0.88769 0.94545 1.44846 1.25436 1.19557 1.44323 1.19355 1.03056 1.01683 1.12886 0.91441 1.25538 0.99680 0.97575 1.02353 1.69843 1.28772 1.14214 1.46247 0.85062 0.77856 0.77547 0.78738 1.20750 1.21436 1.20409 1.21747 0.87319 0.94551 0.95519 0.86710 0.86680 0.88034 0.90347 0.91047 0.86506 0.88322 0.74960 0.91413 0.92632 0.90044 0.89766 0.92607 0.89137 0.99348 0.88705 0.93969 0.97369 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 14.31 67.78 0.97 -1.27 16 2 C -0.18 -3.40 9.89 25.65 0.25 -3.14 16 3 C 0.08 1.53 6.35 71.24 0.45 1.98 16 4 O -0.40 -10.89 9.86 -129.94 -1.28 -12.17 16 5 C 0.05 1.12 6.42 71.24 0.46 1.58 16 6 C 0.50 16.31 6.89 87.66 0.60 16.91 16 7 O -0.57 -23.99 14.00 16.00 0.22 -23.77 16 8 N -0.70 -21.00 5.23 -417.29 -2.18 -23.18 16 9 C 0.17 6.23 0.94 4.85 0.00 6.23 16 10 C -0.12 -3.72 5.75 32.11 0.18 -3.54 16 11 C -0.11 -2.61 6.92 32.34 0.22 -2.38 16 12 C -0.11 -3.07 6.38 31.63 0.20 -2.87 16 13 C -0.10 -3.55 3.67 -9.54 -0.03 -3.58 16 14 H 0.09 2.98 7.69 -2.39 -0.02 2.96 16 15 C 0.14 6.96 5.77 86.51 0.50 7.46 16 16 N -0.62 -33.46 3.39 -695.24 -2.36 -35.82 16 17 C -0.24 -14.18 10.34 84.03 0.87 -13.31 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 20 N -0.94 -55.27 10.08 21.65 0.22 -55.05 16 21 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 25 C 0.14 6.49 6.00 86.51 0.52 7.01 16 26 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 27 H 0.12 1.15 7.90 -2.91 -0.02 1.13 16 28 H 0.10 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.08 1.04 7.86 -2.39 -0.02 1.02 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 9.57 8.28 -92.71 -0.77 8.80 16 34 H 0.07 2.25 6.69 -2.39 -0.02 2.23 16 35 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.77 7.17 -2.38 -0.02 1.75 16 39 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 40 H -0.01 -0.59 7.12 -2.39 -0.02 -0.61 16 41 H 0.10 5.20 5.45 -2.39 -0.01 5.19 16 42 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 43 H 0.01 0.43 7.13 -2.39 -0.02 0.42 16 44 H 0.02 1.26 6.73 -2.39 -0.02 1.24 16 Total: -1.00 -76.28 348.87 2.54 -73.74 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.22 Total: 19.71 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.67 Total: 8.17 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.32 Total: -114.04 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.06 Total: -35.94 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -76.28 2.54 -73.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111658958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.096 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds