Wall clock time and date at job start Tue Mar 31 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47652 * 2 1 4 4 C 1.53000 * 109.47451 * 120.00501 * 2 1 3 5 5 C 1.50698 * 109.47278 * 176.94717 * 4 2 1 6 6 O 1.21281 * 120.00126 * 5.67246 * 5 4 2 7 7 N 1.34777 * 119.99917 * 185.67409 * 5 4 2 8 8 C 1.46502 * 120.00091 * 179.97438 * 7 5 4 9 9 H 1.09004 * 115.51391 * 350.41286 * 8 7 5 10 10 C 1.52998 * 117.44291 * 205.00109 * 8 7 5 11 11 H 1.09000 * 119.54370 * 5.76271 * 10 8 7 12 12 C 1.54392 * 118.12080 * 160.85526 * 10 8 7 13 13 N 1.48140 * 104.61746 * 87.19111 * 12 10 8 14 14 C 1.36940 * 127.83803 * 140.42048 * 13 12 10 15 15 H 1.08000 * 119.99728 * 195.32657 * 14 13 12 16 16 C 1.38805 * 120.00319 * 15.31606 * 14 13 12 17 17 N 1.31625 * 119.99957 * 9.21760 * 16 14 13 18 18 Si 1.86799 * 120.00471 * 189.22055 * 16 14 13 19 19 H 1.48506 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47264 * 119.99977 * 18 16 14 21 21 H 1.48493 * 109.47112 * 240.00222 * 18 16 14 22 22 C 1.48145 * 104.32473 * 320.40846 * 13 12 10 23 23 C 1.52990 * 117.40611 * 135.77344 * 8 7 5 24 24 H 1.09000 * 120.26595 * 356.18560 * 23 8 7 25 25 C 1.53006 * 109.46989 * 240.00150 * 2 1 3 26 26 C 1.53001 * 117.49964 * 128.61720 * 25 2 1 27 27 C 1.52995 * 60.00366 * 252.51659 * 26 25 2 28 28 H 1.09008 * 109.46591 * 294.80773 * 1 2 3 29 29 H 1.08997 * 109.47161 * 54.79992 * 1 2 3 30 30 H 1.09002 * 109.47504 * 174.80645 * 1 2 3 31 31 H 0.96698 * 114.00489 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47176 * 56.94256 * 4 2 1 33 33 H 1.09001 * 109.46726 * 296.94815 * 4 2 1 34 34 H 0.97002 * 119.99991 * 0.02562 * 7 5 4 35 35 H 1.09005 * 110.40892 * 328.40168 * 12 10 8 36 36 H 1.09005 * 110.50726 * 206.02610 * 12 10 8 37 37 H 0.97001 * 120.00501 * 179.97438 * 17 16 14 38 38 H 1.09004 * 110.40638 * 158.36586 * 22 13 12 39 39 H 1.08990 * 110.41508 * 280.80569 * 22 13 12 40 40 H 1.08997 * 115.55468 * 274.33167 * 25 2 1 41 41 H 1.09001 * 117.49729 * 0.02562 * 26 25 2 42 42 H 1.09002 * 117.49838 * 145.02192 * 26 25 2 43 43 H 1.08997 * 117.49597 * 252.51430 * 27 26 25 44 44 H 1.08994 * 117.51893 * 107.48285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5451 -0.7872 1.2119 6 8 4.1555 -0.2165 0.3329 7 7 4.2129 -1.4803 2.1553 8 6 5.6760 -1.5448 2.1188 9 1 6.1410 -1.1487 1.2160 10 6 6.3458 -2.7468 2.7877 11 1 5.7296 -3.5552 3.1813 12 6 7.8000 -3.0828 2.3925 13 7 8.6334 -2.2593 3.2990 14 6 9.8016 -2.6136 3.9196 15 1 10.1788 -2.0207 4.7397 16 6 10.5009 -3.7348 3.4947 17 7 10.1453 -4.3519 2.3877 18 14 11.9467 -4.3682 4.4937 19 1 12.1406 -3.5045 5.6861 20 1 11.6740 -5.7609 4.9310 21 1 13.1743 -4.3429 3.6587 22 6 7.9166 -0.9654 3.3817 23 6 6.4227 -1.3508 3.4399 24 1 5.8742 -1.1111 4.3509 25 6 2.0399 -0.7212 -1.2493 26 6 3.0740 0.0052 -2.1118 27 6 1.6356 -0.1494 -2.6097 28 1 -0.3633 0.4312 0.9329 29 1 -0.3633 0.5924 -0.8397 30 1 -0.3634 -1.0234 -0.0930 31 1 2.9704 1.4236 -0.0004 32 1 1.6327 -1.7320 1.2769 33 1 1.7220 -0.1769 2.1383 34 1 3.7247 -1.9371 2.8581 35 1 7.9843 -2.8095 1.3535 36 1 8.0027 -4.1425 2.5476 37 1 10.6341 -5.1352 2.0905 38 1 8.2059 -0.4278 4.2848 39 1 8.1191 -0.3614 2.4974 40 1 2.1266 -1.8044 -1.1644 41 1 3.3913 0.9968 -1.7890 42 1 3.8414 -0.6001 -2.5944 43 1 1.4566 -0.8564 -3.4197 44 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114148861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:36 Heat of formation + Delta-G solvation = -2.777114 kcal Electronic energy + Delta-G solvation = -23989.806288 eV Core-core repulsion = 20523.792513 eV Total energy + Delta-G solvation = -3466.013775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50461 -39.04828 -37.80568 -35.03865 -34.48626 -32.89671 -32.12302 -30.32522 -28.33502 -27.18140 -25.61819 -23.63373 -22.26312 -21.95798 -20.63377 -20.34823 -19.79303 -19.32085 -17.23982 -16.99658 -16.77617 -16.50857 -15.64710 -15.43737 -14.72563 -14.39849 -14.26202 -13.68726 -13.32867 -13.03443 -12.85878 -12.79175 -12.65453 -12.42047 -12.24905 -12.18426 -11.55385 -11.51691 -11.34493 -11.18526 -11.02058 -10.87249 -10.51154 -10.42845 -10.30404 -10.16982 -10.14926 -9.94390 -9.77536 -9.59399 -9.21400 -8.76678 -8.37536 -6.89886 -5.82543 -3.16802 2.56527 3.07550 3.36141 3.42123 3.44618 3.77711 4.11695 4.27010 4.44133 4.45881 4.55972 4.63025 4.96575 5.02214 5.13061 5.13535 5.25405 5.31772 5.34382 5.35022 5.40890 5.53863 5.60979 5.63233 5.71837 5.80147 5.88253 5.96088 6.01494 6.11833 6.13616 6.19834 6.24442 6.49510 6.66518 6.75699 6.86774 7.31230 7.49699 7.51949 7.66498 7.68772 8.17486 8.24010 9.08117 9.70855 10.47501 11.31815 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.002884 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.407696 B = 9704.734925 C = 9983.416411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 O -0.564 6.564 4 C -0.169 4.169 5 C 0.517 3.483 6 O -0.533 6.533 7 N -0.697 5.697 8 C 0.098 3.902 9 H 0.132 0.868 10 C -0.181 4.181 11 H 0.102 0.898 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.155 3.845 23 C -0.183 4.183 24 H 0.102 0.898 25 C -0.178 4.178 26 C -0.140 4.140 27 C -0.183 4.183 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.398 0.602 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.254 0.746 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.202 5.914 -3.724 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.138 3.862 3 O -0.376 6.376 4 C -0.209 4.209 5 C 0.304 3.696 6 O -0.411 6.411 7 N -0.345 5.345 8 C -0.008 4.008 9 H 0.149 0.851 10 C -0.202 4.202 11 H 0.120 0.880 12 C 0.059 3.941 13 N -0.317 5.317 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.028 3.972 23 C -0.205 4.205 24 H 0.120 0.880 25 C -0.196 4.196 26 C -0.177 4.177 27 C -0.220 4.220 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.242 0.758 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.232 0.768 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.144 6.284 -4.349 21.544 hybrid contribution 1.047 -1.011 1.034 1.785 sum -19.097 5.273 -3.315 20.087 Atomic orbital electron populations 1.21723 0.92247 1.02377 1.02901 1.20269 0.93768 0.81949 0.90186 1.86399 1.29262 1.25278 1.96675 1.22487 0.92886 1.03870 1.01700 1.20558 0.89650 0.78269 0.81172 1.90623 1.69852 1.45273 1.35335 1.45436 1.06680 1.52706 1.29680 1.21846 0.78346 1.02944 0.97687 0.85056 1.24640 1.00613 0.90782 1.04174 0.87996 1.21063 0.82127 0.98662 0.92277 1.45190 1.23811 1.08077 1.54578 1.19045 0.96828 1.09506 1.10114 0.90450 1.24903 0.98778 0.99717 0.96912 1.69905 1.42312 1.22130 1.21782 0.86033 0.81849 0.78574 0.79214 1.20355 1.21623 1.21643 1.21128 0.87473 0.89808 0.98747 1.24354 0.98510 1.01731 0.95885 0.87998 1.22848 1.05809 0.99088 0.91885 1.22712 0.91313 1.02178 1.01515 1.22974 0.99606 1.02959 0.96427 0.91982 0.91439 0.91141 0.75804 0.88218 0.87980 0.76801 0.95704 0.89030 0.93572 0.93020 0.95497 0.88168 0.88320 0.89314 0.89428 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.61 37.15 0.32 -0.75 16 2 C 0.18 1.78 0.92 -90.62 -0.08 1.70 16 3 O -0.56 -6.84 12.12 -53.07 -0.64 -7.49 16 4 C -0.17 -1.49 4.98 -27.88 -0.14 -1.63 16 5 C 0.52 6.31 7.32 -10.99 -0.08 6.23 16 6 O -0.53 -7.98 10.95 -12.28 -0.13 -8.11 16 7 N -0.70 -8.55 5.56 -53.81 -0.30 -8.85 16 8 C 0.10 1.57 5.98 -67.94 -0.41 1.17 16 9 H 0.13 2.42 7.40 -51.93 -0.38 2.03 16 10 C -0.18 -3.32 7.06 -89.22 -0.63 -3.95 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 12 C 0.18 4.40 5.71 -2.41 -0.01 4.38 16 13 N -0.59 -15.12 3.38 -168.86 -0.57 -15.69 16 14 C -0.23 -6.29 10.35 -15.06 -0.16 -6.44 16 15 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 16 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 17 N -0.92 -26.64 10.85 55.49 0.60 -26.04 16 18 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.16 3.26 7.04 -2.40 -0.02 3.24 16 23 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 24 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 25 C -0.18 -1.88 4.01 -90.61 -0.36 -2.25 16 26 C -0.14 -1.65 8.00 -26.73 -0.21 -1.86 16 27 C -0.18 -1.82 9.73 -26.73 -0.26 -2.08 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.39 4.93 5.28 45.56 0.24 5.17 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.81 8.83 -40.82 -0.36 3.45 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.43 6.49 -51.93 -0.34 2.09 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.10 1.23 6.28 -51.93 -0.33 0.90 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -30.90 349.14 -10.15 -41.05 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.57 Total: 9.43 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.77 Total: -6.33 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.27 Total: -50.57 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.78 Total: -15.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.90 -10.15 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114148861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.270 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds