Wall clock time and date at job start Tue Mar 31 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47652 * 2 1 4 4 C 1.53000 * 109.47451 * 120.00501 * 2 1 3 5 5 C 1.50698 * 109.47278 * 176.94717 * 4 2 1 6 6 O 1.21281 * 120.00126 * 5.67246 * 5 4 2 7 7 N 1.34777 * 119.99917 * 185.67409 * 5 4 2 8 8 C 1.46502 * 120.00091 * 179.97438 * 7 5 4 9 9 H 1.09004 * 115.51391 * 350.41286 * 8 7 5 10 10 C 1.52998 * 117.44291 * 205.00109 * 8 7 5 11 11 H 1.09000 * 119.54370 * 5.76271 * 10 8 7 12 12 C 1.54392 * 118.12080 * 160.85526 * 10 8 7 13 13 N 1.48140 * 104.61746 * 87.19111 * 12 10 8 14 14 C 1.36940 * 127.83803 * 140.42048 * 13 12 10 15 15 H 1.08000 * 119.99728 * 195.32657 * 14 13 12 16 16 C 1.38805 * 120.00319 * 15.31606 * 14 13 12 17 17 N 1.31625 * 119.99957 * 9.21760 * 16 14 13 18 18 Si 1.86799 * 120.00471 * 189.22055 * 16 14 13 19 19 H 1.48506 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47264 * 119.99977 * 18 16 14 21 21 H 1.48493 * 109.47112 * 240.00222 * 18 16 14 22 22 C 1.48145 * 104.32473 * 320.40846 * 13 12 10 23 23 C 1.52990 * 117.40611 * 135.77344 * 8 7 5 24 24 H 1.09000 * 120.26595 * 356.18560 * 23 8 7 25 25 C 1.53006 * 109.46989 * 240.00150 * 2 1 3 26 26 C 1.53001 * 117.49964 * 128.61720 * 25 2 1 27 27 C 1.52995 * 60.00366 * 252.51659 * 26 25 2 28 28 H 1.09008 * 109.46591 * 294.80773 * 1 2 3 29 29 H 1.08997 * 109.47161 * 54.79992 * 1 2 3 30 30 H 1.09002 * 109.47504 * 174.80645 * 1 2 3 31 31 H 0.96698 * 114.00489 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47176 * 56.94256 * 4 2 1 33 33 H 1.09001 * 109.46726 * 296.94815 * 4 2 1 34 34 H 0.97002 * 119.99991 * 0.02562 * 7 5 4 35 35 H 1.09005 * 110.40892 * 328.40168 * 12 10 8 36 36 H 1.09005 * 110.50726 * 206.02610 * 12 10 8 37 37 H 0.97001 * 120.00501 * 179.97438 * 17 16 14 38 38 H 1.09004 * 110.40638 * 158.36586 * 22 13 12 39 39 H 1.08990 * 110.41508 * 280.80569 * 22 13 12 40 40 H 1.08997 * 115.55468 * 274.33167 * 25 2 1 41 41 H 1.09001 * 117.49729 * 0.02562 * 26 25 2 42 42 H 1.09002 * 117.49838 * 145.02192 * 26 25 2 43 43 H 1.08997 * 117.49597 * 252.51430 * 27 26 25 44 44 H 1.08994 * 117.51893 * 107.48285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5451 -0.7872 1.2119 6 8 4.1555 -0.2165 0.3329 7 7 4.2129 -1.4803 2.1553 8 6 5.6760 -1.5448 2.1188 9 1 6.1410 -1.1487 1.2160 10 6 6.3458 -2.7468 2.7877 11 1 5.7296 -3.5552 3.1813 12 6 7.8000 -3.0828 2.3925 13 7 8.6334 -2.2593 3.2990 14 6 9.8016 -2.6136 3.9196 15 1 10.1788 -2.0207 4.7397 16 6 10.5009 -3.7348 3.4947 17 7 10.1453 -4.3519 2.3877 18 14 11.9467 -4.3682 4.4937 19 1 12.1406 -3.5045 5.6861 20 1 11.6740 -5.7609 4.9310 21 1 13.1743 -4.3429 3.6587 22 6 7.9166 -0.9654 3.3817 23 6 6.4227 -1.3508 3.4399 24 1 5.8742 -1.1111 4.3509 25 6 2.0399 -0.7212 -1.2493 26 6 3.0740 0.0052 -2.1118 27 6 1.6356 -0.1494 -2.6097 28 1 -0.3633 0.4312 0.9329 29 1 -0.3633 0.5924 -0.8397 30 1 -0.3634 -1.0234 -0.0930 31 1 2.9704 1.4236 -0.0004 32 1 1.6327 -1.7320 1.2769 33 1 1.7220 -0.1769 2.1383 34 1 3.7247 -1.9371 2.8581 35 1 7.9843 -2.8095 1.3535 36 1 8.0027 -4.1425 2.5476 37 1 10.6341 -5.1352 2.0905 38 1 8.2059 -0.4278 4.2848 39 1 8.1191 -0.3614 2.4974 40 1 2.1266 -1.8044 -1.1644 41 1 3.3913 0.9968 -1.7890 42 1 3.8414 -0.6001 -2.5944 43 1 1.4566 -0.8564 -3.4197 44 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114148861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:36 Heat of formation + Delta-G solvation = -22.935841 kcal Electronic energy + Delta-G solvation = -23990.680436 eV Core-core repulsion = 20523.792513 eV Total energy + Delta-G solvation = -3466.887923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48786 -40.38880 -38.91250 -36.06318 -35.84876 -34.38463 -33.12218 -32.01372 -29.17925 -28.92325 -27.47586 -24.52577 -23.51172 -23.08716 -21.94654 -21.63835 -20.90158 -20.66562 -18.89024 -18.14303 -17.84854 -17.62401 -16.81728 -16.55544 -16.31980 -15.59952 -15.39559 -15.08845 -14.85795 -14.65672 -13.96299 -13.72063 -13.65251 -13.44912 -13.35597 -13.14479 -13.00208 -12.88771 -12.84098 -12.75229 -12.21192 -12.11158 -12.01834 -11.96764 -11.86986 -11.65386 -11.32839 -11.18028 -10.87831 -10.76015 -10.70429 -10.50109 -9.66874 -8.94225 -7.93534 -5.30425 1.46347 1.46755 1.58079 1.59623 2.01359 2.47364 2.85821 2.95365 3.27220 3.34889 3.57693 3.66060 3.81650 3.81959 3.84796 3.94906 4.11422 4.14440 4.21800 4.38517 4.43135 4.50637 4.55241 4.69450 4.77360 4.83711 4.84300 4.90883 4.95645 4.97726 5.02682 5.18559 5.27490 5.32285 5.32757 5.39970 5.41436 5.44650 5.56462 5.63330 6.15061 6.56991 6.76080 6.98714 7.30561 7.65493 8.43709 9.20419 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.002884 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.407696 B = 9704.734925 C = 9983.416411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.172 3.828 3 O -0.577 6.577 4 C -0.159 4.159 5 C 0.512 3.488 6 O -0.564 6.564 7 N -0.685 5.685 8 C 0.124 3.876 9 H 0.105 0.895 10 C -0.181 4.181 11 H 0.126 0.874 12 C 0.188 3.812 13 N -0.618 5.618 14 C -0.241 4.241 15 H 0.083 0.917 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.293 1.293 22 C 0.147 3.853 23 C -0.168 4.168 24 H 0.134 0.866 25 C -0.175 4.175 26 C -0.161 4.161 27 C -0.168 4.168 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.382 0.618 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.417 0.583 35 H -0.007 1.007 36 H 0.058 0.942 37 H 0.250 0.750 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.782 5.963 -2.097 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.130 3.870 3 O -0.389 6.389 4 C -0.198 4.198 5 C 0.301 3.699 6 O -0.443 6.443 7 N -0.335 5.335 8 C 0.017 3.983 9 H 0.123 0.877 10 C -0.202 4.202 11 H 0.144 0.856 12 C 0.062 3.938 13 N -0.342 5.342 14 C -0.370 4.370 15 H 0.100 0.900 16 C -0.257 4.257 17 N -0.596 5.596 18 Si 0.810 3.190 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.220 1.220 22 C 0.022 3.978 23 C -0.189 4.189 24 H 0.152 0.848 25 C -0.193 4.193 26 C -0.198 4.198 27 C -0.205 4.205 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.254 0.746 35 H 0.011 0.989 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.781 6.353 -2.700 23.804 hybrid contribution 1.851 -0.948 0.435 2.125 sum -20.930 5.406 -2.265 21.735 Atomic orbital electron populations 1.21751 0.90312 1.03731 1.03190 1.20558 0.95104 0.81040 0.90254 1.86397 1.28786 1.26914 1.96764 1.22508 0.89576 1.05859 1.01882 1.21285 0.91159 0.77233 0.80244 1.90642 1.70817 1.46335 1.36514 1.45254 1.04591 1.53102 1.30557 1.21314 0.80714 1.00287 0.96009 0.87687 1.24313 0.98047 0.92209 1.05675 0.85595 1.20791 0.85722 0.96598 0.90640 1.45502 1.23999 1.10140 1.54527 1.19441 0.97737 1.09569 1.10226 0.89959 1.25768 1.01708 1.00152 0.98050 1.70106 1.43579 1.22457 1.23453 0.84966 0.78190 0.77855 0.78010 1.18798 1.21556 1.21984 1.21264 0.89639 0.88199 0.98711 1.24254 0.96625 1.00226 0.97778 0.84829 1.22953 1.04605 0.99163 0.92586 1.22610 0.92136 1.01698 1.03394 1.22996 0.97771 1.03121 0.96645 0.91017 0.92094 0.89063 0.76472 0.85116 0.85854 0.74597 0.98872 0.92314 0.94089 0.91989 0.96506 0.87886 0.89626 0.90687 0.88251 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.61 71.98 0.62 -1.03 16 2 C 0.17 2.97 0.92 -10.79 -0.01 2.96 16 3 O -0.58 -13.29 12.12 -131.93 -1.60 -14.89 16 4 C -0.16 -2.19 4.98 29.85 0.15 -2.04 16 5 C 0.51 11.30 7.32 87.66 0.64 11.94 16 6 O -0.56 -16.57 10.95 14.02 0.15 -16.42 16 7 N -0.68 -14.78 5.56 -442.55 -2.46 -17.24 16 8 C 0.12 3.85 5.98 44.99 0.27 4.11 16 9 H 0.11 3.92 7.40 -2.39 -0.02 3.91 16 10 C -0.18 -6.49 7.06 -9.89 -0.07 -6.56 16 11 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 12 C 0.19 9.30 5.71 86.54 0.49 9.80 16 13 N -0.62 -32.13 3.38 -688.14 -2.33 -34.46 16 14 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 15 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 16 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 17 N -0.95 -57.22 10.85 21.65 0.23 -56.98 16 18 Si 0.98 45.39 29.56 68.60 2.03 47.41 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 C 0.15 6.18 7.04 86.54 0.61 6.79 16 23 C -0.17 -5.53 7.06 -9.89 -0.07 -5.60 16 24 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 25 C -0.17 -3.43 4.01 -10.79 -0.04 -3.47 16 26 C -0.16 -3.84 8.00 30.59 0.24 -3.60 16 27 C -0.17 -3.16 9.73 30.59 0.30 -2.86 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 0.85 7.48 -2.39 -0.02 0.83 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.38 9.67 5.28 -74.06 -0.39 9.28 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 6.15 8.83 -92.71 -0.82 5.33 16 35 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 36 H 0.06 3.26 6.49 -2.38 -0.02 3.24 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 41 H 0.09 2.24 6.28 -2.39 -0.01 2.23 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 Total: -1.00 -70.08 349.14 0.29 -69.79 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.20 Total: 28.17 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.46 Total: -5.38 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.55 Total: -108.68 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.45 Total: -31.31 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.08 0.29 -69.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114148861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.853 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds