Wall clock time and date at job start Tue Mar 31 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53003 * 109.47023 * 120.00002 * 2 1 3 5 5 H 1.08997 * 109.46949 * 299.99762 * 4 2 1 6 6 C 1.47198 * 109.47030 * 59.99861 * 4 2 1 7 7 N 3.43556 * 83.99372 * 158.55154 * 2 1 3 8 8 N 1.46896 * 109.46974 * 179.97438 * 4 2 1 9 9 C 1.46959 * 110.99832 * 179.97438 * 8 4 2 10 10 C 1.53058 * 109.36419 * 183.18928 * 9 8 4 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 O 1.21296 * 119.99996 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99978 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99848 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00405 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99358 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99517 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00588 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47149 * 89.99828 * 20 18 16 22 22 H 1.48498 * 109.47388 * 209.99797 * 20 18 16 23 23 H 1.48501 * 109.46930 * 330.00192 * 20 18 16 24 24 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 25 25 C 1.46959 * 111.00113 * 303.79892 * 8 4 2 26 26 H 1.09005 * 109.46906 * 300.00086 * 1 2 3 27 27 H 1.08998 * 109.46612 * 60.00172 * 1 2 3 28 28 H 1.08997 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47064 * 239.99694 * 2 1 3 30 30 H 1.09002 * 109.47604 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47272 * 300.00106 * 3 2 1 32 32 H 1.08997 * 109.47277 * 59.99824 * 3 2 1 33 33 H 1.08995 * 109.48972 * 63.22103 * 9 8 4 34 34 H 1.08998 * 109.48999 * 303.15503 * 9 8 4 35 35 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 36 36 H 1.09001 * 109.50540 * 61.57751 * 10 9 8 37 37 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 38 38 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 39 39 H 0.97002 * 119.99767 * 359.97438 * 15 13 12 40 40 H 0.96997 * 120.00211 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.48972 * 60.64434 * 24 11 10 42 42 H 1.08998 * 109.48999 * 180.71033 * 24 11 10 43 43 H 1.08999 * 109.48803 * 296.77931 * 25 8 4 44 44 H 1.09000 * 109.48812 * 56.82567 * 25 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5493 -2.1090 1.2493 7 7 1.1706 -3.1801 1.2494 8 7 3.5090 -0.7218 1.2489 9 6 4.0356 -1.4073 2.4374 10 6 5.5635 -1.3168 2.4401 11 7 6.0896 -1.9235 1.2093 12 6 7.5587 -1.9240 1.2090 13 6 8.0605 -2.7640 0.0629 14 8 7.2719 -3.3083 -0.6809 15 7 9.3854 -2.9105 -0.1358 16 6 9.8419 -3.6743 -1.1788 17 1 9.1398 -4.1589 -1.8410 18 6 11.2080 -3.8248 -1.3838 19 7 11.6455 -4.5573 -2.3832 20 14 12.4224 -2.9860 -0.2389 21 1 12.7439 -3.8931 0.8922 22 1 13.6656 -2.6652 -0.9849 23 1 11.8230 -1.7331 0.2865 24 6 5.5630 -1.2380 0.0209 25 6 4.0352 -1.3279 0.0179 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.7334 -2.4543 2.4171 34 1 3.6417 -0.9321 3.3358 35 1 5.9578 -1.8495 3.3054 36 1 5.8661 -0.2708 2.4881 37 1 7.9224 -0.9027 1.0973 38 1 7.9221 -2.3383 2.1495 39 1 10.0160 -2.4749 0.4588 40 1 12.5991 -4.6628 -2.5262 41 1 5.8653 -0.1910 0.0411 42 1 5.9570 -1.7132 -0.8775 43 1 3.7329 -2.3740 -0.0303 44 1 3.6406 -0.7951 -0.8472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116407070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:00 Heat of formation + Delta-G solvation = 11.705979 kcal Electronic energy + Delta-G solvation = -24113.658808 eV Core-core repulsion = 20680.565818 eV Total energy + Delta-G solvation = -3433.092990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16596 -38.60241 -37.04874 -35.65721 -34.24640 -33.70296 -31.67952 -30.91696 -29.39819 -27.51369 -26.73155 -24.64996 -23.80941 -23.11578 -20.76671 -20.08360 -19.37149 -18.30611 -17.80040 -16.73575 -16.01781 -15.41696 -15.19806 -15.02819 -14.82623 -14.51897 -14.30392 -13.92713 -13.77335 -13.67184 -13.20111 -13.04074 -12.82831 -12.66740 -12.53890 -12.41235 -12.23183 -12.22344 -11.84228 -11.67942 -11.33541 -11.31565 -11.25294 -11.14831 -11.08099 -10.73416 -10.59763 -10.49853 -9.97520 -9.53695 -8.85149 -8.55825 -8.18030 -7.95071 -6.30916 -3.82296 2.52426 2.58270 3.02239 3.06886 3.15032 3.52229 3.73722 3.77417 3.91677 4.10401 4.38989 4.57349 4.69104 4.77709 4.93938 5.05205 5.08733 5.17027 5.22319 5.30070 5.34872 5.39328 5.45662 5.52387 5.54499 5.65255 5.66612 5.75154 5.76422 5.80671 5.84931 5.92394 5.96690 6.08706 6.16953 6.31550 6.62899 6.72890 7.16382 7.30470 7.36211 7.58894 8.14943 8.60522 8.95614 9.42771 9.83818 10.82280 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.003139 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.865801 B = 8918.933610 C = 8997.686739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.182 3.818 5 H 0.123 0.877 6 C 0.174 3.826 7 N -0.424 5.424 8 N -0.513 5.513 9 C 0.052 3.948 10 C 0.058 3.942 11 N -0.519 5.519 12 C 0.045 3.955 13 C 0.452 3.548 14 O -0.560 6.560 15 N -0.591 5.591 16 C -0.304 4.304 17 H 0.119 0.881 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.056 3.944 25 C 0.050 3.950 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.035 0.965 42 H 0.109 0.891 43 H 0.047 0.953 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 15.449 10.445 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.195 4.195 4 C 0.070 3.930 5 H 0.141 0.859 6 C -0.147 4.147 7 N -0.100 5.100 8 N -0.237 5.237 9 C -0.076 4.076 10 C -0.070 4.070 11 N -0.244 5.244 12 C -0.087 4.087 13 C 0.238 3.762 14 O -0.442 6.442 15 N -0.231 5.231 16 C -0.433 4.433 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.072 4.072 25 C -0.078 4.078 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.157 13.376 9.817 23.868 hybrid contribution 1.345 0.843 0.911 1.830 sum -15.812 14.219 10.728 23.818 Atomic orbital electron populations 1.21896 0.94462 1.01942 1.02630 1.21225 0.95850 0.97583 0.96141 1.21717 1.02666 0.93477 1.01603 1.19819 0.88193 0.83123 1.01894 0.85948 1.30611 0.94061 0.96374 0.93647 1.81197 1.08117 1.12624 1.08075 1.62645 1.03201 1.53974 1.03848 1.22266 0.95304 0.97509 0.92510 1.22143 0.93601 0.97944 0.93338 1.61726 1.06475 1.54365 1.01836 1.21859 0.88189 0.98974 0.99640 1.19661 0.82720 0.86088 0.87732 1.90528 1.54566 1.50639 1.48418 1.42215 1.05514 1.46519 1.28808 1.19424 0.92708 1.25273 1.05870 0.86298 1.25039 0.96904 0.97294 0.96944 1.69622 1.15073 1.38488 1.29017 0.86669 0.81778 0.79750 0.81169 1.19633 1.20216 1.19495 1.22329 0.92904 0.96407 0.95530 1.22380 0.95648 0.98214 0.91529 0.92076 0.91668 0.92956 0.89965 0.90865 0.92628 0.92473 0.93575 0.89861 0.90215 0.93895 0.93172 0.89231 0.79726 0.91626 0.94650 0.87295 0.93431 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.94 37.16 0.33 -0.62 16 2 C -0.09 -0.62 1.99 -90.62 -0.18 -0.80 16 3 C -0.14 -0.83 9.04 37.15 0.34 -0.50 16 4 C 0.18 1.50 1.91 -70.50 -0.13 1.36 16 5 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 6 C 0.17 2.01 10.91 -20.76 -0.23 1.78 16 7 N -0.42 -6.22 18.54 42.15 0.78 -5.44 16 8 N -0.51 -5.08 3.97 -229.87 -0.91 -5.99 16 9 C 0.05 0.54 5.25 -3.76 -0.02 0.52 16 10 C 0.06 0.67 5.61 -3.76 -0.02 0.65 16 11 N -0.52 -8.09 4.45 -235.91 -1.05 -9.14 16 12 C 0.04 0.73 5.45 -4.97 -0.03 0.71 16 13 C 0.45 10.12 7.48 -10.98 -0.08 10.03 16 14 O -0.56 -14.74 13.92 5.54 0.08 -14.66 16 15 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 16 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 20 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 24 C 0.06 0.85 5.26 -3.77 -0.02 0.83 16 25 C 0.05 0.62 4.92 -3.77 -0.02 0.61 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.41 7.23 -51.93 -0.38 0.03 16 29 H 0.08 0.67 6.28 -51.93 -0.33 0.35 16 30 H 0.07 0.53 7.61 -51.93 -0.39 0.14 16 31 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 38 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 39 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 2.05 5.85 -51.93 -0.30 1.75 16 43 H 0.05 0.73 7.33 -51.93 -0.38 0.35 16 44 H 0.09 0.94 6.06 -51.93 -0.31 0.63 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -33.43 349.17 -7.05 -40.48 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.90 Total: 7.06 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.31 Total: 6.88 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.46 Total: -59.56 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.43 -7.05 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116407070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.183 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds