Wall clock time and date at job start Tue Mar 31 2020 03:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.53003 * 109.47023 * 120.00002 * 2 1 3 5 5 H 1.08997 * 109.46949 * 299.99762 * 4 2 1 6 6 C 1.47198 * 109.47030 * 59.99861 * 4 2 1 7 7 N 3.43556 * 83.99372 * 158.55154 * 2 1 3 8 8 N 1.46896 * 109.46974 * 179.97438 * 4 2 1 9 9 C 1.46959 * 110.99832 * 179.97438 * 8 4 2 10 10 C 1.53058 * 109.36419 * 183.18928 * 9 8 4 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 O 1.21296 * 119.99996 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99978 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99848 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00405 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99358 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99517 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00588 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47149 * 89.99828 * 20 18 16 22 22 H 1.48498 * 109.47388 * 209.99797 * 20 18 16 23 23 H 1.48501 * 109.46930 * 330.00192 * 20 18 16 24 24 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 25 25 C 1.46959 * 111.00113 * 303.79892 * 8 4 2 26 26 H 1.09005 * 109.46906 * 300.00086 * 1 2 3 27 27 H 1.08998 * 109.46612 * 60.00172 * 1 2 3 28 28 H 1.08997 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47064 * 239.99694 * 2 1 3 30 30 H 1.09002 * 109.47604 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47272 * 300.00106 * 3 2 1 32 32 H 1.08997 * 109.47277 * 59.99824 * 3 2 1 33 33 H 1.08995 * 109.48972 * 63.22103 * 9 8 4 34 34 H 1.08998 * 109.48999 * 303.15503 * 9 8 4 35 35 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 36 36 H 1.09001 * 109.50540 * 61.57751 * 10 9 8 37 37 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 38 38 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 39 39 H 0.97002 * 119.99767 * 359.97438 * 15 13 12 40 40 H 0.96997 * 120.00211 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.48972 * 60.64434 * 24 11 10 42 42 H 1.08998 * 109.48999 * 180.71033 * 24 11 10 43 43 H 1.08999 * 109.48803 * 296.77931 * 25 8 4 44 44 H 1.09000 * 109.48812 * 56.82567 * 25 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5493 -2.1090 1.2493 7 7 1.1706 -3.1801 1.2494 8 7 3.5090 -0.7218 1.2489 9 6 4.0356 -1.4073 2.4374 10 6 5.5635 -1.3168 2.4401 11 7 6.0896 -1.9235 1.2093 12 6 7.5587 -1.9240 1.2090 13 6 8.0605 -2.7640 0.0629 14 8 7.2719 -3.3083 -0.6809 15 7 9.3854 -2.9105 -0.1358 16 6 9.8419 -3.6743 -1.1788 17 1 9.1398 -4.1589 -1.8410 18 6 11.2080 -3.8248 -1.3838 19 7 11.6455 -4.5573 -2.3832 20 14 12.4224 -2.9860 -0.2389 21 1 12.7439 -3.8931 0.8922 22 1 13.6656 -2.6652 -0.9849 23 1 11.8230 -1.7331 0.2865 24 6 5.5630 -1.2380 0.0209 25 6 4.0352 -1.3279 0.0179 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.7334 -2.4543 2.4171 34 1 3.6417 -0.9321 3.3358 35 1 5.9578 -1.8495 3.3054 36 1 5.8661 -0.2708 2.4881 37 1 7.9224 -0.9027 1.0973 38 1 7.9221 -2.3383 2.1495 39 1 10.0160 -2.4749 0.4588 40 1 12.5991 -4.6628 -2.5262 41 1 5.8653 -0.1910 0.0411 42 1 5.9570 -1.7132 -0.8775 43 1 3.7329 -2.3740 -0.0303 44 1 3.6406 -0.7951 -0.8472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116407070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:59 Heat of formation + Delta-G solvation = -15.182642 kcal Electronic energy + Delta-G solvation = -24114.824786 eV Core-core repulsion = 20680.565818 eV Total energy + Delta-G solvation = -3434.258968 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15445 -40.17249 -38.21148 -36.61565 -35.97176 -34.84425 -33.74295 -31.91315 -30.50006 -28.21254 -27.81465 -26.17771 -24.78040 -24.38451 -21.41420 -21.28045 -21.06335 -20.20802 -18.66369 -17.78421 -17.50086 -16.84511 -16.38273 -16.12529 -16.10399 -15.53826 -15.47189 -15.18918 -15.07373 -14.78368 -14.65851 -14.29898 -13.95138 -13.85060 -13.65140 -13.37769 -13.14730 -13.14006 -12.91734 -12.82368 -12.65146 -12.40930 -12.22189 -12.13288 -12.00557 -11.93147 -11.86412 -11.65423 -11.44867 -11.25421 -10.34979 -10.22660 -9.75829 -9.15020 -8.40740 -6.01556 1.30583 1.36611 1.45383 1.60280 1.67596 1.97728 2.23937 2.61089 2.71519 2.98139 3.15163 3.24546 3.71049 3.84702 4.00904 4.06436 4.20089 4.28565 4.31399 4.35513 4.43320 4.46941 4.53239 4.60276 4.64304 4.72428 4.85636 4.94147 4.96796 5.02683 5.03816 5.13224 5.21354 5.32206 5.45188 5.53733 5.66165 5.74818 5.80737 5.93486 6.07158 6.25683 6.46480 6.61194 6.89815 7.41389 7.99646 8.77241 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.003139 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.865801 B = 8918.933610 C = 8997.686739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.181 3.819 5 H 0.163 0.837 6 C 0.198 3.802 7 N -0.487 5.487 8 N -0.496 5.496 9 C 0.051 3.949 10 C 0.059 3.941 11 N -0.549 5.549 12 C 0.058 3.942 13 C 0.450 3.550 14 O -0.609 6.609 15 N -0.592 5.592 16 C -0.327 4.327 17 H 0.052 0.948 18 C -0.017 4.017 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.228 1.228 24 C 0.061 3.939 25 C 0.061 3.939 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.016 0.984 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.008 0.992 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 19.503 14.150 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.188 4.188 4 C 0.070 3.930 5 H 0.180 0.820 6 C -0.121 4.121 7 N -0.164 5.164 8 N -0.219 5.219 9 C -0.077 4.077 10 C -0.068 4.068 11 N -0.275 5.275 12 C -0.073 4.073 13 C 0.238 3.762 14 O -0.493 6.493 15 N -0.234 5.234 16 C -0.456 4.456 17 H 0.070 0.930 18 C -0.215 4.215 19 N -0.578 5.578 20 Si 0.786 3.214 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.151 1.151 24 C -0.067 4.067 25 C -0.067 4.067 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.027 0.973 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.977 17.453 13.548 27.864 hybrid contribution 1.144 -0.468 -0.332 1.280 sum -15.833 16.985 13.216 26.718 Atomic orbital electron populations 1.21880 0.93661 1.00993 1.04078 1.21221 0.96447 0.98151 0.94693 1.21672 1.01930 0.92369 1.02834 1.20319 0.86987 0.81437 1.04293 0.81956 1.31301 0.92460 0.96661 0.91711 1.81209 1.10270 1.14634 1.10322 1.62691 1.04068 1.52579 1.02527 1.22394 0.95065 0.96305 0.93958 1.22269 0.93928 0.99074 0.91501 1.61656 1.06119 1.56172 1.03559 1.21785 0.88920 0.99158 0.97433 1.21001 0.81837 0.85076 0.88315 1.90524 1.55834 1.52390 1.50531 1.42034 1.06539 1.46616 1.28221 1.18980 0.92465 1.27024 1.07140 0.92963 1.26145 0.98865 0.97619 0.98896 1.69813 1.16017 1.40368 1.31616 0.85340 0.77747 0.79965 0.78301 1.18261 1.20088 1.15142 1.22128 0.94145 0.96623 0.93831 1.22188 0.94427 0.96353 0.93769 0.90062 0.90869 0.95049 0.91798 0.91858 0.92082 0.90639 0.96609 0.85855 0.88732 0.91625 0.89970 0.86158 0.77464 0.91188 0.92731 0.92172 0.97341 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.94 71.98 0.64 -0.91 16 2 C -0.09 -1.03 1.99 -10.79 -0.02 -1.05 16 3 C -0.13 -1.15 9.04 71.98 0.65 -0.50 16 4 C 0.18 2.53 1.91 43.11 0.08 2.61 16 5 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 6 C 0.20 4.50 10.91 89.44 0.98 5.48 16 7 N -0.49 -14.78 18.54 20.01 0.37 -14.41 16 8 N -0.50 -8.57 3.97 -881.17 -3.50 -12.07 16 9 C 0.05 0.90 5.25 86.31 0.45 1.35 16 10 C 0.06 1.15 5.61 86.31 0.48 1.63 16 11 N -0.55 -16.29 4.45 -900.28 -4.00 -20.29 16 12 C 0.06 1.75 5.45 85.56 0.47 2.21 16 13 C 0.45 20.36 7.48 87.66 0.66 21.02 16 14 O -0.61 -34.08 13.92 -3.08 -0.04 -34.12 16 15 N -0.59 -27.94 5.09 -306.98 -1.56 -29.51 16 16 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 17 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 18 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 19 N -0.94 -57.13 13.96 21.66 0.30 -56.83 16 20 Si 0.97 38.74 27.74 68.60 1.90 40.64 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 24 C 0.06 1.82 5.26 86.31 0.45 2.27 16 25 C 0.06 1.52 4.92 86.31 0.42 1.95 16 26 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.03 0.46 7.23 -2.39 -0.02 0.45 16 29 H 0.06 1.01 6.28 -2.39 -0.01 0.99 16 30 H 0.06 0.72 7.61 -2.39 -0.02 0.70 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.02 0.38 7.22 -2.39 -0.02 0.37 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 38 H 0.12 2.93 8.03 -2.38 -0.02 2.91 16 39 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 40 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 2.40 5.85 -2.39 -0.01 2.39 16 43 H 0.01 0.27 7.33 -2.39 -0.02 0.25 16 44 H 0.10 2.21 6.06 -2.39 -0.01 2.19 16 Total: -1.00 -82.77 349.17 0.47 -82.31 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.41 Total: 27.16 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.59 Total: 17.12 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -8.39 Total: -133.10 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.04 Total: -34.12 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.64 kcal Total: -82.77 0.47 -82.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116407070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.125 kcal (2) G-P(sol) polarization free energy of solvation -82.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds