Wall clock time and date at job start Tue Mar 31 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.64478 * 2 1 4 4 C 1.54325 * 110.71674 * 123.13943 * 2 1 3 5 5 N 1.47024 * 107.26676 * 140.73726 * 4 2 1 6 6 C 1.34784 * 125.64626 * 181.02862 * 5 4 2 7 7 O 1.21351 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.49448 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.21350 * 120.00150 * 357.82165 * 8 6 5 10 10 N 1.34779 * 119.99935 * 177.82267 * 8 6 5 11 11 C 1.46497 * 120.00055 * 185.60453 * 10 8 6 12 12 C 1.52999 * 109.47031 * 185.19749 * 11 10 8 13 13 C 1.50707 * 115.55208 * 57.84727 * 12 11 10 14 14 H 1.08000 * 119.99745 * 264.61178 * 13 12 11 15 15 C 1.37879 * 119.99791 * 84.60769 * 13 12 11 16 16 N 1.31512 * 120.00119 * 1.96553 * 15 13 12 17 17 Si 1.86796 * 119.99590 * 181.96557 * 15 13 12 18 18 H 1.48497 * 109.47607 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46910 * 120.00137 * 17 15 13 20 20 H 1.48504 * 109.46953 * 239.99727 * 17 15 13 21 21 C 1.53004 * 117.49934 * 272.17599 * 12 11 10 22 22 C 1.52994 * 117.49883 * 203.51587 * 12 11 10 23 23 C 1.47419 * 108.70752 * 1.05876 * 5 4 2 24 24 C 1.55153 * 110.72297 * 236.85670 * 2 1 3 25 25 H 1.09004 * 111.00630 * 324.03521 * 24 2 1 26 26 C 1.53005 * 111.00535 * 87.88581 * 24 2 1 27 27 H 1.09000 * 109.47389 * 300.70538 * 1 2 3 28 28 H 1.09004 * 109.47192 * 60.70007 * 1 2 3 29 29 H 1.08991 * 109.47596 * 180.70193 * 1 2 3 30 30 H 1.08997 * 109.88217 * 260.15043 * 4 2 1 31 31 H 1.08993 * 109.88275 * 21.31616 * 4 2 1 32 32 H 0.97008 * 119.99763 * 5.60228 * 10 8 6 33 33 H 1.09004 * 109.46585 * 305.19311 * 11 10 8 34 34 H 1.08995 * 109.47024 * 65.19467 * 11 10 8 35 35 H 0.96999 * 120.00127 * 185.00753 * 16 15 13 36 36 H 1.09002 * 117.49614 * 0.02562 * 21 12 11 37 37 H 1.08996 * 117.49683 * 145.02075 * 21 12 11 38 38 H 1.08997 * 117.50371 * 214.98172 * 22 12 11 39 39 H 1.09001 * 117.49931 * 359.97438 * 22 12 11 40 40 H 1.08997 * 110.36853 * 94.71316 * 23 5 4 41 41 H 1.09001 * 110.36547 * 217.04045 * 23 5 4 42 42 H 1.08994 * 109.47323 * 59.99637 * 26 24 2 43 43 H 1.08998 * 109.46879 * 180.02562 * 26 24 2 44 44 H 1.09005 * 109.46455 * 300.00172 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2087 5 7 3.2470 -1.5461 0.7427 6 6 3.9956 -2.3768 1.4952 7 8 3.7213 -2.5490 2.6647 8 6 5.1634 -3.0857 0.8893 9 8 5.4141 -2.9442 -0.2896 10 7 5.9381 -3.8821 1.6522 11 6 7.1521 -4.4791 1.0901 12 6 7.7719 -5.4332 2.1131 13 6 6.8781 -6.5516 2.5838 14 1 6.3111 -6.4419 3.4965 15 6 6.7842 -7.7146 1.8493 16 7 7.5038 -7.8635 0.7586 17 14 5.6347 -9.0788 2.4034 18 1 4.9423 -8.6667 3.6508 19 1 4.6287 -9.3397 1.3426 20 1 6.4187 -10.3143 2.6567 21 6 8.7563 -4.8423 3.1244 22 6 9.2675 -5.7298 1.9868 23 6 3.4674 -1.2455 -0.6836 24 6 2.0790 -0.7934 -1.2151 25 1 1.4469 -1.6529 -1.4383 26 6 2.2238 0.1111 -2.4406 27 1 -0.3634 0.5247 0.8836 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 2.3710 -0.0991 1.9991 31 1 1.3139 -1.4753 1.5781 32 1 5.6919 -4.0599 2.5735 33 1 6.8998 -5.0312 0.1847 34 1 7.8660 -3.6917 0.8486 35 1 7.3848 -8.6494 0.2026 36 1 8.9620 -3.7737 3.0612 37 1 8.7577 -5.2627 4.1301 38 1 9.6051 -6.7337 2.2445 39 1 9.8099 -5.2456 1.1747 40 1 4.1955 -0.4419 -0.7938 41 1 3.8031 -2.1379 -1.2118 42 1 2.9138 0.9236 -2.2131 43 1 2.6099 -0.4704 -3.2777 44 1 1.2501 0.5244 -2.7040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117726039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:50 Heat of formation + Delta-G solvation = -70.101673 kcal Electronic energy + Delta-G solvation = -24058.681814 eV Core-core repulsion = 20589.748627 eV Total energy + Delta-G solvation = -3468.933187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86482 -40.12598 -38.95928 -38.48100 -35.28966 -34.23536 -33.98259 -32.21852 -29.06290 -27.91761 -27.32980 -27.21478 -24.41360 -22.94918 -22.50702 -21.44998 -21.02985 -20.69598 -18.95710 -18.15484 -17.85134 -17.36237 -16.74187 -16.62761 -16.33173 -15.83397 -15.32418 -15.16750 -14.88165 -14.71529 -14.51356 -14.27001 -13.85166 -13.72468 -13.60885 -13.49439 -13.11639 -12.93036 -12.88550 -12.81947 -12.53466 -12.47326 -12.38030 -12.02721 -11.75446 -11.66290 -11.43784 -11.27238 -11.00840 -10.60885 -10.43989 -10.21135 -9.96033 -9.82275 -8.13524 -6.26056 0.33980 1.26407 1.37435 1.41711 1.51086 2.12298 2.39900 2.52149 3.14871 3.29008 3.47672 3.53611 3.59632 3.80904 4.19569 4.21261 4.31397 4.49477 4.52027 4.56338 4.62132 4.63143 4.65503 4.71298 4.77688 4.85993 4.92510 4.99804 5.01526 5.06147 5.12823 5.21129 5.23615 5.27350 5.38603 5.44697 5.49945 5.53464 5.66650 5.74888 6.03001 6.29577 6.34152 6.69117 6.80937 6.98515 7.43758 8.94196 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.003696 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.465176 B = 7574.928162 C = 7936.729100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.103 0.897 4 C 0.101 3.899 5 N -0.589 5.589 6 C 0.519 3.481 7 O -0.547 6.547 8 C 0.497 3.503 9 O -0.547 6.547 10 N -0.668 5.668 11 C 0.176 3.824 12 C -0.003 4.003 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.902 5.902 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.280 1.280 21 C -0.182 4.182 22 C -0.146 4.146 23 C 0.094 3.906 24 C -0.097 4.097 25 H 0.082 0.918 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.260 0.740 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 17.609 -4.138 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.021 4.021 5 N -0.322 5.322 6 C 0.302 3.698 7 O -0.426 6.426 8 C 0.278 3.722 9 O -0.427 6.427 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.004 4.004 13 C -0.543 4.543 14 H 0.074 0.926 15 C -0.172 4.172 16 N -0.540 5.540 17 Si 0.769 3.231 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.206 1.206 21 C -0.219 4.219 22 C -0.184 4.184 23 C -0.027 4.027 24 C -0.117 4.117 25 H 0.101 0.899 26 C -0.192 4.192 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.594 17.409 -4.396 21.373 hybrid contribution -0.283 -1.469 0.598 1.611 sum -11.877 15.940 -3.798 20.237 Atomic orbital electron populations 1.21743 0.92121 1.02318 1.03352 1.22325 0.97514 0.99355 0.91606 0.87891 1.22430 0.86244 0.94711 0.98687 1.48351 1.28962 1.42027 1.12882 1.19811 0.83806 0.80410 0.85753 1.90730 1.71050 1.64064 1.16744 1.20189 0.84170 0.81286 0.86583 1.90649 1.71771 1.64675 1.15608 1.45762 1.24465 1.45050 1.16441 1.20816 0.83904 0.93690 0.96350 1.19078 0.89649 0.95546 0.96147 1.20668 1.26264 0.98611 1.08800 0.92586 1.25606 0.96371 0.99751 0.95426 1.70088 1.39420 1.29443 1.15038 0.85740 0.79130 0.79801 0.78413 1.19191 1.21206 1.20617 1.23061 1.06255 0.97783 0.94814 1.22395 0.97959 0.98630 0.99447 1.22984 0.98835 1.02101 0.78822 1.22588 0.93963 0.99231 0.95875 0.89914 1.21660 1.03172 0.98835 0.95539 0.91412 0.90369 0.92956 0.90684 0.91253 0.75007 0.93896 0.92581 0.93121 0.88965 0.89981 0.91722 0.90467 0.90331 0.90138 0.91725 0.92345 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.14 71.98 0.66 -0.75 16 2 C -0.09 -1.23 3.00 -9.61 -0.03 -1.26 16 3 H 0.10 1.14 8.04 -2.39 -0.02 1.12 16 4 C 0.10 2.12 6.46 86.73 0.56 2.68 16 5 N -0.59 -16.67 3.33 -812.41 -2.70 -19.37 16 6 C 0.52 18.64 7.91 87.27 0.69 19.33 16 7 O -0.55 -21.71 16.81 -3.25 -0.05 -21.77 16 8 C 0.50 19.78 7.85 87.27 0.68 20.46 16 9 O -0.55 -22.86 13.74 -3.25 -0.04 -22.90 16 10 N -0.67 -27.91 5.36 -464.42 -2.49 -30.41 16 11 C 0.18 7.92 5.57 86.38 0.48 8.40 16 12 C 0.00 -0.16 1.51 -52.93 -0.08 -0.24 16 13 C -0.51 -26.64 8.38 25.60 0.21 -26.43 16 14 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 15 C 0.03 1.59 5.43 84.66 0.46 2.05 16 16 N -0.90 -50.85 12.73 21.45 0.27 -50.58 16 17 Si 0.94 43.45 29.54 68.60 2.03 45.47 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 C -0.18 -7.36 9.94 30.62 0.30 -7.05 16 22 C -0.15 -6.59 9.26 30.62 0.28 -6.31 16 23 C 0.09 2.27 5.59 87.03 0.49 2.75 16 24 C -0.10 -1.57 3.11 -9.23 -0.03 -1.60 16 25 H 0.08 1.41 8.05 -2.38 -0.02 1.39 16 26 C -0.13 -1.55 9.32 71.98 0.67 -0.88 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.52 7.80 -2.39 -0.02 1.51 16 32 H 0.41 17.22 7.72 -92.70 -0.72 16.51 16 33 H 0.04 2.22 8.09 -2.38 -0.02 2.20 16 34 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 36 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 1.78 8.00 -2.39 -0.02 1.76 16 41 H 0.08 2.37 6.10 -2.39 -0.01 2.36 16 42 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -63.28 362.82 2.63 -60.65 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.27 Total: 27.75 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.36 Total: 11.16 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -4.92 Total: -100.36 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.10 Total: -44.67 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.28 2.63 -60.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117726039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.455 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds