Wall clock time and date at job start Tue Mar 31 2020 03:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99756 * 2 1 4 4 C 1.50693 * 109.47382 * 293.95662 * 3 2 1 5 5 H 1.08004 * 120.00247 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00061 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99906 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99962 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47238 * 89.99677 * 8 6 4 10 10 H 1.48497 * 109.46993 * 209.99387 * 8 6 4 11 11 H 1.48501 * 109.46961 * 329.99527 * 8 6 4 12 12 C 1.46899 * 111.00547 * 123.95918 * 2 1 3 13 13 C 1.52998 * 109.47540 * 164.01176 * 12 2 1 14 14 H 1.09003 * 109.47074 * 58.50610 * 13 12 2 15 15 O 1.42900 * 109.47043 * 298.50869 * 13 12 2 16 16 C 1.52995 * 109.47260 * 178.50897 * 13 12 2 17 17 N 1.46897 * 109.47230 * 185.00146 * 16 13 12 18 18 C 1.46900 * 111.00300 * 179.97438 * 17 16 13 19 19 C 1.52999 * 109.47493 * 179.97438 * 18 17 16 20 20 C 1.50694 * 109.47399 * 180.02562 * 19 18 17 21 21 C 1.38395 * 120.00554 * 124.99540 * 20 19 18 22 22 N 1.32124 * 119.99754 * 179.97438 * 21 20 19 23 23 C 1.32147 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.38342 * 120.00347 * 0.25911 * 23 22 21 25 25 N 1.32129 * 119.99827 * 304.97509 * 20 19 18 26 26 H 1.09002 * 109.47159 * 301.52281 * 1 2 3 27 27 H 1.08998 * 109.47745 * 61.53236 * 1 2 3 28 28 H 1.09009 * 109.46796 * 181.52900 * 1 2 3 29 29 H 1.08999 * 109.46811 * 53.95694 * 3 2 1 30 30 H 1.08999 * 109.46777 * 173.95352 * 3 2 1 31 31 H 0.97002 * 119.99650 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47251 * 44.00619 * 12 2 1 33 33 H 1.09000 * 109.46907 * 284.01229 * 12 2 1 34 34 H 0.96701 * 113.99760 * 299.99720 * 15 13 12 35 35 H 1.08994 * 109.47488 * 64.99518 * 16 13 12 36 36 H 1.09007 * 109.46899 * 304.99907 * 16 13 12 37 37 H 1.00899 * 110.99592 * 303.95289 * 17 16 13 38 38 H 1.09000 * 109.47122 * 59.99176 * 18 17 16 39 39 H 1.09007 * 109.46704 * 299.99746 * 18 17 16 40 40 H 1.09003 * 109.47161 * 59.99760 * 19 18 17 41 41 H 1.08998 * 109.46732 * 299.99725 * 19 18 17 42 42 H 1.07998 * 119.99928 * 0.02562 * 21 20 19 43 43 H 1.07999 * 120.00080 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00008 * 179.72209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 1 1.0744 1.5114 -2.0488 6 6 2.0275 3.3493 -1.5287 7 7 2.7126 4.0016 -0.6152 8 14 1.5824 4.1871 -3.1379 9 1 0.2705 4.8681 -2.9951 10 1 2.6248 5.1879 -3.4798 11 1 1.4980 3.1715 -4.2180 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0839 0.8982 14 1 4.0282 -0.1549 0.7696 15 8 3.6034 -1.8838 -0.2787 16 6 4.0308 -1.8495 2.0996 17 7 5.4755 -2.0501 1.9244 18 6 6.0470 -2.7832 3.0619 19 6 7.5494 -2.9729 2.8435 20 6 8.1356 -3.7254 4.0101 21 6 8.8519 -4.8895 3.7932 22 7 9.3662 -5.5489 4.8162 23 6 9.1970 -5.0967 6.0462 24 6 8.4769 -3.9356 6.2635 25 7 7.9659 -3.2736 5.2401 26 1 -0.3633 0.5373 0.8760 27 1 -0.3634 0.4898 -0.9034 28 1 -0.3633 -1.0274 0.0274 29 1 1.5610 1.9273 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9872 4.9178 -0.7772 32 1 1.4357 -1.6957 1.2398 33 1 1.8934 -0.1783 2.0497 34 1 3.1334 -2.7277 -0.2349 35 1 3.5361 -2.8178 2.1751 36 1 3.8512 -1.2778 3.0101 37 1 5.6721 -2.5217 1.0543 38 1 5.5662 -3.7579 3.1445 39 1 5.8814 -2.2175 3.9789 40 1 8.0305 -1.9983 2.7607 41 1 7.7146 -3.5388 1.9267 42 1 8.9912 -5.2585 2.7878 43 1 9.6171 -5.6359 6.8824 44 1 8.3348 -3.5685 7.2691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118149905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:29 Heat of formation + Delta-G solvation = 0.005561 kcal Electronic energy + Delta-G solvation = -22673.122480 eV Core-core repulsion = 19239.522122 eV Total energy + Delta-G solvation = -3433.600358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44292 -38.28720 -36.48523 -35.36534 -34.51471 -33.09451 -32.43667 -30.38788 -28.64563 -27.24859 -25.76252 -24.99409 -24.00722 -23.05442 -21.86162 -21.38030 -19.97839 -17.92309 -17.34475 -16.71120 -16.35898 -16.25728 -15.90184 -15.32491 -14.84584 -14.76205 -14.55913 -14.42684 -13.86551 -13.61442 -13.46560 -13.20050 -12.73416 -12.61350 -12.25907 -11.93903 -11.91662 -11.80317 -11.53145 -11.36905 -11.25828 -11.12753 -10.88997 -10.66701 -10.62272 -10.30081 -9.72192 -9.65956 -9.52794 -9.39627 -9.08553 -8.45949 -8.36925 -7.16950 -5.96510 -3.96901 0.38096 0.75911 3.29804 3.36065 3.42161 3.47312 3.61024 3.89249 3.93134 4.17213 4.46203 4.50805 4.67820 4.76634 4.91310 4.92858 5.01700 5.07382 5.10646 5.32990 5.34683 5.38115 5.44319 5.58843 5.72865 5.78752 5.83914 5.84512 6.00110 6.07411 6.11526 6.36556 6.56698 6.73756 6.89491 6.94263 7.33515 7.36556 7.38578 7.40633 7.85041 8.09305 8.16102 8.25753 8.60895 9.10087 9.66602 11.14586 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.002287 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.220706 B =12241.038899 C =12650.255790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.026 3.974 13 C 0.114 3.886 14 H 0.114 0.886 15 O -0.541 6.541 16 C 0.032 3.968 17 N -0.683 5.683 18 C 0.069 3.931 19 C -0.067 4.067 20 C 0.090 3.910 21 C 0.051 3.949 22 N -0.437 5.437 23 C 0.037 3.963 24 C 0.055 3.945 25 N -0.434 5.434 26 H 0.010 0.990 27 H 0.073 0.927 28 H 0.041 0.959 29 H -0.012 1.012 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.359 0.641 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.348 0.652 38 H 0.023 0.977 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.567 -19.005 12.721 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.103 4.103 13 C 0.054 3.946 14 H 0.131 0.869 15 O -0.344 6.344 16 C -0.098 4.098 17 N -0.315 5.315 18 C -0.060 4.060 19 C -0.106 4.106 20 C -0.051 4.051 21 C -0.109 4.109 22 N -0.152 5.152 23 C -0.123 4.123 24 C -0.105 4.105 25 N -0.149 5.149 26 H 0.028 0.972 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.006 0.994 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.203 0.797 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.041 0.959 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.187 0.813 43 H 0.186 0.814 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.343 -17.927 12.377 24.115 hybrid contribution -1.127 -0.384 0.250 1.216 sum 9.217 -18.310 12.627 24.076 Atomic orbital electron populations 1.22194 0.88940 0.98798 1.00929 1.62047 1.06438 1.17941 1.39126 1.19787 0.95649 0.81380 0.96497 1.21146 1.34577 0.96794 1.01698 0.91937 1.24990 0.95368 0.97411 0.96963 1.69959 1.38468 1.11384 1.34092 0.86504 0.77876 0.79206 0.83872 1.20868 1.21271 1.19768 1.22658 0.95788 0.98137 0.93759 1.22015 0.94795 0.94676 0.83066 0.86857 1.86703 1.75135 1.33258 1.39288 1.22670 0.87675 0.98965 1.00513 1.60312 1.12816 1.53475 1.04905 1.21831 0.92433 0.96180 0.95604 1.20519 0.96057 1.01038 0.93009 1.22325 0.95030 0.93925 0.93811 1.23681 0.94960 0.92810 0.99494 1.68445 1.16379 1.30625 0.99720 1.23764 0.97346 0.95624 0.95521 1.23830 0.94209 0.93054 0.99373 1.68315 1.16823 1.30650 0.99145 0.97172 0.90794 0.93968 0.99422 0.94857 0.92994 0.92339 0.95055 0.79654 0.95429 0.90309 0.83352 0.95861 0.89971 0.88215 0.89697 0.81334 0.81418 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.06 0.56 1.35 16 2 N -0.53 -11.60 4.60 -244.38 -1.12 -12.72 16 3 C 0.19 5.09 4.57 -4.98 -0.02 5.07 16 4 C -0.50 -14.50 8.53 -34.44 -0.29 -14.79 16 5 H 0.06 1.79 7.10 -52.48 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.03 0.46 4.63 -3.83 -0.02 0.44 16 13 C 0.11 1.87 3.23 -26.73 -0.09 1.78 16 14 H 0.11 2.28 6.55 -51.93 -0.34 1.94 16 15 O -0.54 -8.84 12.75 -35.23 -0.45 -9.29 16 16 C 0.03 0.41 5.36 -3.83 -0.02 0.39 16 17 N -0.68 -8.26 6.50 -113.78 -0.74 -9.00 16 18 C 0.07 0.71 5.55 -3.82 -0.02 0.69 16 19 C -0.07 -0.58 5.89 -27.89 -0.16 -0.74 16 20 C 0.09 0.82 6.18 -82.41 -0.51 0.31 16 21 C 0.05 0.42 10.85 -17.37 -0.19 0.23 16 22 N -0.44 -3.99 10.50 -13.06 -0.14 -4.13 16 23 C 0.04 0.26 11.22 -17.38 -0.20 0.07 16 24 C 0.06 0.41 11.22 -17.37 -0.20 0.21 16 25 N -0.43 -4.33 10.06 -9.29 -0.09 -4.42 16 26 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 27 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 28 H 0.04 0.69 7.97 -51.92 -0.41 0.28 16 29 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 30 H 0.03 0.95 6.38 -51.93 -0.33 0.61 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.36 4.37 9.05 45.56 0.41 4.78 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.35 4.00 8.29 -39.29 -0.33 3.67 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.95 7.96 -51.92 -0.41 0.54 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 42 H 0.17 0.96 7.95 -52.49 -0.42 0.55 16 43 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -34.18 365.78 -8.88 -43.06 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.31 Total: 3.92 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.25 Total: -3.54 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -1.36 Total: -56.77 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.45 Total: -9.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.18 -8.88 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118149905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.069 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds