Wall clock time and date at job start Tue Mar 31 2020 03:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99756 * 2 1 4 4 C 1.50693 * 109.47382 * 293.95662 * 3 2 1 5 5 H 1.08004 * 120.00247 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00061 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99906 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99962 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47238 * 89.99677 * 8 6 4 10 10 H 1.48497 * 109.46993 * 209.99387 * 8 6 4 11 11 H 1.48501 * 109.46961 * 329.99527 * 8 6 4 12 12 C 1.46899 * 111.00547 * 123.95918 * 2 1 3 13 13 C 1.52998 * 109.47540 * 164.01176 * 12 2 1 14 14 H 1.09003 * 109.47074 * 58.50610 * 13 12 2 15 15 O 1.42900 * 109.47043 * 298.50869 * 13 12 2 16 16 C 1.52995 * 109.47260 * 178.50897 * 13 12 2 17 17 N 1.46897 * 109.47230 * 185.00146 * 16 13 12 18 18 C 1.46900 * 111.00300 * 179.97438 * 17 16 13 19 19 C 1.52999 * 109.47493 * 179.97438 * 18 17 16 20 20 C 1.50694 * 109.47399 * 180.02562 * 19 18 17 21 21 C 1.38395 * 120.00554 * 124.99540 * 20 19 18 22 22 N 1.32124 * 119.99754 * 179.97438 * 21 20 19 23 23 C 1.32147 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.38342 * 120.00347 * 0.25911 * 23 22 21 25 25 N 1.32129 * 119.99827 * 304.97509 * 20 19 18 26 26 H 1.09002 * 109.47159 * 301.52281 * 1 2 3 27 27 H 1.08998 * 109.47745 * 61.53236 * 1 2 3 28 28 H 1.09009 * 109.46796 * 181.52900 * 1 2 3 29 29 H 1.08999 * 109.46811 * 53.95694 * 3 2 1 30 30 H 1.08999 * 109.46777 * 173.95352 * 3 2 1 31 31 H 0.97002 * 119.99650 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47251 * 44.00619 * 12 2 1 33 33 H 1.09000 * 109.46907 * 284.01229 * 12 2 1 34 34 H 0.96701 * 113.99760 * 299.99720 * 15 13 12 35 35 H 1.08994 * 109.47488 * 64.99518 * 16 13 12 36 36 H 1.09007 * 109.46899 * 304.99907 * 16 13 12 37 37 H 1.00899 * 110.99592 * 303.95289 * 17 16 13 38 38 H 1.09000 * 109.47122 * 59.99176 * 18 17 16 39 39 H 1.09007 * 109.46704 * 299.99746 * 18 17 16 40 40 H 1.09003 * 109.47161 * 59.99760 * 19 18 17 41 41 H 1.08998 * 109.46732 * 299.99725 * 19 18 17 42 42 H 1.07998 * 119.99928 * 0.02562 * 21 20 19 43 43 H 1.07999 * 120.00080 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00008 * 179.72209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 1 1.0744 1.5114 -2.0488 6 6 2.0275 3.3493 -1.5287 7 7 2.7126 4.0016 -0.6152 8 14 1.5824 4.1871 -3.1379 9 1 0.2705 4.8681 -2.9951 10 1 2.6248 5.1879 -3.4798 11 1 1.4980 3.1715 -4.2180 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0839 0.8982 14 1 4.0282 -0.1549 0.7696 15 8 3.6034 -1.8838 -0.2787 16 6 4.0308 -1.8495 2.0996 17 7 5.4755 -2.0501 1.9244 18 6 6.0470 -2.7832 3.0619 19 6 7.5494 -2.9729 2.8435 20 6 8.1356 -3.7254 4.0101 21 6 8.8519 -4.8895 3.7932 22 7 9.3662 -5.5489 4.8162 23 6 9.1970 -5.0967 6.0462 24 6 8.4769 -3.9356 6.2635 25 7 7.9659 -3.2736 5.2401 26 1 -0.3633 0.5373 0.8760 27 1 -0.3634 0.4898 -0.9034 28 1 -0.3633 -1.0274 0.0274 29 1 1.5610 1.9273 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9872 4.9178 -0.7772 32 1 1.4357 -1.6957 1.2398 33 1 1.8934 -0.1783 2.0497 34 1 3.1334 -2.7277 -0.2349 35 1 3.5361 -2.8178 2.1751 36 1 3.8512 -1.2778 3.0101 37 1 5.6721 -2.5217 1.0543 38 1 5.5662 -3.7579 3.1445 39 1 5.8814 -2.2175 3.9789 40 1 8.0305 -1.9983 2.7607 41 1 7.7146 -3.5388 1.9267 42 1 8.9912 -5.2585 2.7878 43 1 9.6171 -5.6359 6.8824 44 1 8.3348 -3.5685 7.2691 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118149905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:29 Heat of formation + Delta-G solvation = -29.255521 kcal Electronic energy + Delta-G solvation = -22674.391336 eV Core-core repulsion = 19239.522122 eV Total energy + Delta-G solvation = -3434.869214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03240 -39.61371 -37.70886 -36.64864 -35.24621 -34.59498 -33.82398 -31.46553 -29.77955 -29.17598 -26.96513 -25.76455 -25.32897 -24.31898 -22.84379 -22.50668 -21.62675 -18.61575 -18.53543 -17.89478 -17.57428 -17.31056 -16.90013 -16.58253 -16.37205 -16.02802 -15.61403 -15.61190 -15.12712 -14.98175 -14.58777 -14.28904 -13.96991 -13.75922 -13.64901 -13.20755 -13.08876 -12.88086 -12.71684 -12.59191 -12.57182 -12.52164 -12.29432 -12.25278 -12.14324 -12.00346 -11.48648 -11.30617 -10.77877 -10.59325 -10.16692 -10.00850 -9.37998 -8.95170 -8.18864 -6.28429 -0.18506 0.15242 1.40497 1.42864 1.54559 2.41453 2.69567 2.88385 3.13145 3.17661 3.37286 3.43006 3.57946 3.71419 3.91563 3.97963 4.07645 4.16530 4.24032 4.33776 4.40019 4.43279 4.45851 4.58823 4.59406 4.63022 4.65221 4.78200 4.80119 5.03694 5.06225 5.08420 5.14419 5.27279 5.32721 5.44813 5.66064 6.00687 6.08469 6.32336 6.35608 6.47900 6.65722 6.82715 6.87488 7.06808 7.40762 8.92395 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.002287 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.220706 B =12241.038899 C =12650.255790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.065 0.935 15 O -0.557 6.557 16 C 0.045 3.955 17 N -0.698 5.698 18 C 0.078 3.922 19 C -0.061 4.061 20 C 0.076 3.924 21 C 0.047 3.953 22 N -0.462 5.462 23 C 0.040 3.960 24 C 0.050 3.950 25 N -0.465 5.465 26 H 0.007 0.993 27 H 0.055 0.945 28 H 0.083 0.917 29 H -0.043 1.043 30 H 0.005 0.995 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.025 0.975 34 H 0.379 0.621 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.352 0.648 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.190 0.810 43 H 0.200 0.800 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -20.966 12.624 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.083 0.917 15 O -0.363 6.363 16 C -0.085 4.085 17 N -0.330 5.330 18 C -0.051 4.051 19 C -0.100 4.100 20 C -0.064 4.064 21 C -0.112 4.112 22 N -0.176 5.176 23 C -0.119 4.119 24 C -0.110 4.110 25 N -0.181 5.181 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.102 0.898 29 H -0.026 1.026 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.171 0.829 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.207 0.793 43 H 0.217 0.783 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.006 -19.923 12.277 25.451 hybrid contribution -1.005 0.150 0.368 1.081 sum 9.001 -19.773 12.645 25.137 Atomic orbital electron populations 1.22224 0.87481 1.01152 0.99867 1.61949 1.07869 1.15138 1.41601 1.19387 0.93833 0.83865 0.94639 1.21477 1.34666 0.97439 1.02450 0.92041 1.25951 0.95079 0.98166 1.00793 1.70094 1.39418 1.11824 1.36255 0.85371 0.77960 0.78060 0.79155 1.19662 1.20737 1.18972 1.22796 0.96849 0.98838 0.91837 1.21696 0.93633 0.93606 0.84596 0.91736 1.86652 1.75728 1.34501 1.39420 1.22443 0.88318 0.99528 0.98190 1.60254 1.12512 1.54503 1.05779 1.21725 0.93504 0.95860 0.94030 1.20450 0.94684 1.00740 0.94081 1.22350 0.95904 0.94496 0.93694 1.23979 0.94420 0.92407 1.00423 1.68500 1.17162 1.31337 1.00623 1.24306 0.96364 0.95430 0.95804 1.24325 0.93641 0.93029 0.99989 1.68289 1.17933 1.31827 1.00050 0.97451 0.92651 0.89803 1.02555 0.97695 0.92752 0.88390 0.95649 0.77270 0.92659 0.90851 0.82873 0.94960 0.91691 0.89666 0.87539 0.79302 0.78287 0.78611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.32 127.69 1.19 2.76 16 2 N -0.54 -23.68 4.60 -927.07 -4.27 -27.94 16 3 C 0.21 11.55 4.57 85.55 0.39 11.95 16 4 C -0.52 -30.73 8.53 25.60 0.22 -30.51 16 5 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 6 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 7 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.03 0.88 4.63 86.30 0.40 1.28 16 13 C 0.12 4.09 3.23 30.59 0.10 4.19 16 14 H 0.06 2.77 6.55 -2.39 -0.02 2.75 16 15 O -0.56 -17.67 12.75 -148.98 -1.90 -19.57 16 16 C 0.05 1.11 5.36 86.30 0.46 1.58 16 17 N -0.70 -16.59 6.50 -513.89 -3.34 -19.93 16 18 C 0.08 1.55 5.55 86.30 0.48 2.03 16 19 C -0.06 -1.02 5.89 29.85 0.18 -0.84 16 20 C 0.08 1.34 6.18 42.55 0.26 1.60 16 21 C 0.05 0.73 10.85 84.69 0.92 1.64 16 22 N -0.46 -7.77 10.50 -195.23 -2.05 -9.82 16 23 C 0.04 0.50 11.22 84.67 0.95 1.45 16 24 C 0.05 0.67 11.22 84.67 0.95 1.62 16 25 N -0.47 -9.04 10.06 -183.29 -1.84 -10.88 16 26 H 0.01 0.27 8.13 -2.39 -0.02 0.25 16 27 H 0.05 2.30 6.90 -2.39 -0.02 2.28 16 28 H 0.08 2.50 7.97 -2.38 -0.02 2.48 16 29 H -0.04 -2.59 8.11 -2.39 -0.02 -2.61 16 30 H 0.01 0.30 6.38 -2.39 -0.02 0.29 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.10 2.57 7.88 -2.39 -0.02 2.55 16 33 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.38 8.30 9.05 -74.06 -0.67 7.63 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.35 7.80 8.29 -89.69 -0.74 7.05 16 38 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 1.51 7.96 -2.38 -0.02 1.50 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.11 1.26 7.89 -2.39 -0.02 1.24 16 42 H 0.19 1.87 7.95 -2.91 -0.02 1.84 16 43 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -76.18 365.78 -4.54 -80.72 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.41 Total: 18.49 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.96 Total: -0.93 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -11.22 Total: -126.43 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.90 Total: -19.57 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.18 -4.54 -80.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118149905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.469 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds