Wall clock time and date at job start Tue Mar 31 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30445 * 125.98937 * 2 1 4 4 N 1.39941 * 108.89831 * 180.22508 * 3 2 1 5 5 C 1.46499 * 125.75215 * 179.75244 * 4 3 2 6 6 C 1.53000 * 109.47164 * 254.99740 * 5 4 3 7 7 C 1.52997 * 109.47442 * 14.99744 * 5 4 3 8 8 C 1.53000 * 109.47049 * 134.99899 * 5 4 3 9 9 C 1.34252 * 108.49289 * 359.74840 * 4 3 2 10 10 C 1.38049 * 107.41455 * 0.02562 * 9 4 3 11 11 C 1.47436 * 126.41296 * 179.97438 * 10 9 4 12 12 O 1.21602 * 120.00091 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99867 * 359.74889 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47041 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.47047 * 179.97438 * 15 14 13 17 17 C 1.36931 * 120.00281 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00462 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99449 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00310 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47127 * 60.00178 * 21 19 17 23 23 H 1.48497 * 109.47199 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47080 * 300.00284 * 21 19 17 25 25 H 1.08997 * 109.47026 * 270.18448 * 1 2 3 26 26 H 1.08999 * 109.47270 * 30.18875 * 1 2 3 27 27 H 1.09007 * 109.47103 * 150.18907 * 1 2 3 28 28 H 1.09007 * 109.47132 * 59.99898 * 6 5 4 29 29 H 1.08998 * 109.47706 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47185 * 300.00361 * 6 5 4 31 31 H 1.09001 * 109.47021 * 59.99666 * 7 5 4 32 32 H 1.08998 * 109.47231 * 179.97438 * 7 5 4 33 33 H 1.09001 * 109.47549 * 300.00096 * 7 5 4 34 34 H 1.09002 * 109.46962 * 59.99845 * 8 5 4 35 35 H 1.08998 * 109.47224 * 179.97438 * 8 5 4 36 36 H 1.08997 * 109.47292 * 299.99963 * 8 5 4 37 37 H 1.07992 * 126.29477 * 180.02562 * 9 4 3 38 38 H 0.97004 * 120.00018 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 40 40 H 1.08993 * 109.47306 * 59.99553 * 14 13 11 41 41 H 1.08999 * 109.46737 * 299.99175 * 15 14 13 42 42 H 1.08993 * 109.47411 * 59.99647 * 15 14 13 43 43 H 0.97004 * 120.00009 * 359.97438 * 16 15 14 44 44 H 0.97000 * 119.99492 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0052 5 6 4.7787 1.5290 -0.0120 6 6 5.4045 1.5370 -1.4081 7 6 4.3453 2.9482 0.3606 8 6 5.8057 1.0260 1.0044 9 6 3.6440 -0.6979 -0.0028 10 6 2.3373 -1.1432 0.0033 11 6 1.8916 -2.5486 0.0072 12 8 0.7039 -2.8098 0.0120 13 7 2.8004 -3.5437 -0.0003 14 6 2.3575 -4.9402 0.0030 15 6 3.5783 -5.8624 -0.0076 16 7 3.1355 -7.2588 -0.0036 17 6 4.0588 -8.2700 -0.0121 18 1 5.1136 -8.0381 -0.0222 19 6 3.6393 -9.5932 -0.0079 20 7 2.3538 -9.8759 0.0038 21 14 4.8989 -10.9725 -0.0188 22 1 5.7605 -10.8656 1.1859 23 1 4.1989 -12.2822 -0.0126 24 1 5.7386 -10.8664 -1.2389 25 1 -0.3633 0.0033 1.0276 26 1 -0.3634 0.8883 -0.5168 27 1 -0.3634 -0.8917 -0.5109 28 1 4.6727 1.8953 -2.1323 29 1 6.2734 2.1949 -1.4132 30 1 5.7132 0.5259 -1.6737 31 1 3.8994 2.9426 1.3552 32 1 5.2140 3.6065 0.3560 33 1 3.6136 3.3067 -0.3634 34 1 6.1145 0.0149 0.7389 35 1 6.6746 1.6841 0.9990 36 1 5.3599 1.0204 1.9990 37 1 4.5297 -1.3157 -0.0052 38 1 3.7477 -3.3353 -0.0086 39 1 1.7651 -5.1313 0.8978 40 1 1.7508 -5.1311 -0.8820 41 1 4.1703 -5.6712 -0.9026 42 1 4.1855 -5.6717 0.8773 43 1 2.1882 -7.4672 0.0050 44 1 2.0606 -10.8005 0.0064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127061666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:52 Heat of formation + Delta-G solvation = 13.989319 kcal Electronic energy + Delta-G solvation = -23208.565480 eV Core-core repulsion = 19775.571503 eV Total energy + Delta-G solvation = -3432.993977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.57909 -40.28424 -37.83359 -37.20333 -35.47445 -33.31243 -32.97401 -31.54038 -29.45968 -28.59211 -28.35841 -28.11896 -25.70855 -24.16175 -23.07897 -21.85694 -20.99225 -20.28316 -19.25522 -18.40768 -17.20829 -16.80366 -16.73661 -16.40784 -16.27715 -15.42324 -15.27738 -15.16990 -14.98442 -14.95278 -14.63004 -14.52080 -14.01117 -13.78138 -13.25803 -13.12156 -13.08900 -13.03220 -13.02249 -12.93213 -12.72542 -12.60459 -12.49985 -12.22115 -12.13194 -12.09617 -11.84698 -11.71195 -10.95523 -10.89150 -10.33468 -10.16628 -9.61205 -9.04269 -7.94585 -5.25945 0.51887 1.11347 1.32664 1.49699 1.53563 1.59679 2.18989 2.44984 2.60686 3.25082 3.39529 3.66057 3.74732 3.76171 3.86037 3.99640 4.11115 4.16818 4.27202 4.34703 4.46576 4.59279 4.61623 4.63169 4.71488 4.74782 4.75654 4.80470 4.84512 4.94929 4.99944 5.09058 5.11442 5.17482 5.24111 5.25873 5.43118 5.51591 5.55783 5.95719 6.26057 6.52292 6.69429 7.31721 7.32429 8.04756 8.27528 9.29078 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002730 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.132953 B =10254.249124 C =11332.404370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.111 3.889 3 N -0.316 5.316 4 N -0.341 5.341 5 C 0.166 3.834 6 C -0.158 4.158 7 C -0.141 4.141 8 C -0.160 4.160 9 C 0.121 3.879 10 C -0.314 4.314 11 C 0.590 3.410 12 O -0.585 6.585 13 N -0.709 5.709 14 C 0.131 3.869 15 C 0.150 3.850 16 N -0.748 5.748 17 C -0.248 4.248 18 H 0.084 0.916 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.275 1.275 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.218 0.782 38 H 0.413 0.587 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 29.139 -0.033 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 N -0.138 5.138 4 N -0.119 5.119 5 C 0.085 3.915 6 C -0.215 4.215 7 C -0.198 4.198 8 C -0.218 4.218 9 C -0.032 4.032 10 C -0.329 4.329 11 C 0.379 3.621 12 O -0.466 6.466 13 N -0.361 5.361 14 C 0.006 3.994 15 C 0.023 3.977 16 N -0.391 5.391 17 C -0.379 4.379 18 H 0.102 0.898 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.201 1.201 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.205 0.795 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.480 30.292 -0.030 31.741 hybrid contribution 0.061 -1.999 0.001 2.000 sum 9.541 28.293 -0.028 29.858 Atomic orbital electron populations 1.20269 0.85680 1.03641 1.03562 1.22666 0.97791 0.89224 0.95865 1.77093 0.87209 1.22569 1.26935 1.49101 1.05554 1.04748 1.52519 1.21311 0.81210 0.90250 0.98734 1.22293 1.01798 1.04341 0.93116 1.21913 1.02929 0.93184 1.01821 1.22323 0.98349 1.03786 0.97363 1.23439 0.98742 0.85895 0.95145 1.20146 0.93591 0.93028 1.26146 1.17587 0.85122 0.84425 0.74934 1.90721 1.18152 1.84955 1.52776 1.45486 1.10251 1.04877 1.75473 1.21128 0.97029 0.80189 1.01072 1.20842 0.94214 0.83296 0.99310 1.42436 1.06101 1.00821 1.89760 1.19626 0.89995 0.86603 1.41696 0.89779 1.25686 0.97945 0.99986 1.03424 1.69841 1.14872 1.18341 1.59169 0.85123 0.77826 0.77884 0.78373 1.20056 1.22433 1.20069 0.90074 0.89833 0.90458 0.93112 0.87545 0.91037 0.92893 0.88023 0.92546 0.90234 0.87356 0.92368 0.76570 0.75041 0.92924 0.92936 0.94332 0.94327 0.79493 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 9.92 71.23 0.71 -1.08 16 2 C 0.11 2.96 7.26 43.51 0.32 3.27 16 3 N -0.32 -7.64 11.56 -46.68 -0.54 -8.18 16 4 N -0.34 -6.07 3.41 -306.13 -1.04 -7.11 16 5 C 0.17 1.73 1.23 3.60 0.00 1.73 16 6 C -0.16 -1.20 8.72 71.98 0.63 -0.57 16 7 C -0.14 -1.48 8.07 71.98 0.58 -0.90 16 8 C -0.16 -0.95 8.28 71.98 0.60 -0.35 16 9 C 0.12 2.12 10.09 84.28 0.85 2.97 16 10 C -0.31 -8.05 6.13 -20.15 -0.12 -8.17 16 11 C 0.59 18.40 7.81 86.67 0.68 19.08 16 12 O -0.58 -23.00 14.92 -4.04 -0.06 -23.06 16 13 N -0.71 -19.39 5.54 -466.36 -2.59 -21.97 16 14 C 0.13 4.56 5.79 86.38 0.50 5.06 16 15 C 0.15 5.67 6.37 86.38 0.55 6.22 16 16 N -0.75 -38.06 5.60 -343.47 -1.92 -39.99 16 17 C -0.25 -13.64 9.99 84.04 0.84 -12.80 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 21 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.19 6.56 -2.38 -0.02 2.17 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.79 8.03 -2.39 -0.02 0.77 16 34 H 0.08 0.32 7.34 -2.39 -0.02 0.30 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.22 1.85 6.93 -2.91 -0.02 1.83 16 38 H 0.41 7.98 7.40 -92.71 -0.69 7.29 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.59 366.04 2.36 -74.23 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.39 Total: 27.99 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.59 Total: 10.44 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -5.81 Total: -137.18 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.59 2.36 -74.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127061666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.223 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds