Wall clock time and date at job start Tue Mar 31 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46759 * 2 1 4 4 C 1.53000 * 109.47066 * 119.99644 * 2 1 3 5 5 C 1.52998 * 109.46991 * 65.92959 * 4 2 1 6 6 H 1.08996 * 109.47591 * 305.22526 * 5 4 2 7 7 C 1.50703 * 109.47254 * 185.21964 * 5 4 2 8 8 O 1.21284 * 119.99854 * 0.02562 * 7 5 4 9 9 N 1.34768 * 120.00358 * 179.97438 * 7 5 4 10 10 C 1.46495 * 120.00356 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47251 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99913 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99754 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00018 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99920 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47264 * 89.99793 * 17 15 13 19 19 H 1.48495 * 109.47255 * 210.00176 * 17 15 13 20 20 H 1.48502 * 109.47140 * 330.00169 * 17 15 13 21 21 N 1.46505 * 109.46779 * 65.22565 * 5 4 2 22 22 C 1.36887 * 126.39392 * 235.18768 * 21 5 4 23 23 C 1.34671 * 106.81501 * 180.02562 * 22 21 5 24 24 N 1.34124 * 108.02301 * 0.02562 * 23 22 21 25 25 C 1.30510 * 109.25552 * 359.72460 * 24 23 22 26 26 H 1.08994 * 109.47538 * 299.99876 * 1 2 3 27 27 H 1.09006 * 109.46700 * 60.00550 * 1 2 3 28 28 H 1.09001 * 109.46574 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47538 * 240.00124 * 2 1 3 30 30 H 1.09005 * 109.47490 * 55.04448 * 3 2 1 31 31 H 1.09000 * 109.47005 * 175.04137 * 3 2 1 32 32 H 1.08999 * 109.47347 * 295.04422 * 3 2 1 33 33 H 1.08996 * 109.47132 * 305.92958 * 4 2 1 34 34 H 1.09004 * 109.46973 * 185.93437 * 4 2 1 35 35 H 0.97005 * 119.99937 * 0.02562 * 9 7 5 36 36 H 1.08996 * 109.47244 * 300.00749 * 10 9 7 37 37 H 1.09009 * 109.46935 * 60.00515 * 10 9 7 38 38 H 1.09002 * 109.47260 * 300.00245 * 11 10 9 39 39 H 1.08996 * 109.46961 * 60.00556 * 11 10 9 40 40 H 0.96996 * 120.00103 * 0.02562 * 12 11 10 41 41 H 0.96998 * 119.99778 * 179.97438 * 16 15 13 42 42 H 1.07993 * 126.59154 * 0.03846 * 22 21 5 43 43 H 1.07996 * 125.98550 * 179.97438 * 23 22 21 44 44 H 1.07997 * 125.64787 * 180.29173 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6553 -2.2002 1.1771 6 1 0.5790 -2.2890 1.0291 7 6 2.0437 -2.8837 2.4628 8 8 2.5754 -2.2501 3.3498 9 7 1.7993 -4.1988 2.6275 10 6 2.1764 -4.8631 3.8775 11 6 1.7918 -6.3422 3.8052 12 7 2.1683 -7.0063 5.0556 13 6 1.9208 -8.3428 5.2225 14 1 1.4477 -8.9071 4.4326 15 6 2.2781 -8.9721 6.4071 16 7 2.8552 -8.2845 7.3696 17 14 1.9412 -10.7953 6.6345 18 1 3.1091 -11.5781 6.1563 19 1 1.7098 -11.0803 8.0734 20 1 0.7366 -11.1772 5.8544 21 7 2.3560 -2.8329 0.0568 22 6 1.7806 -3.5264 -0.9736 23 6 2.7824 -3.9344 -1.7760 24 7 3.9378 -3.5023 -1.2496 25 6 3.6898 -2.8370 -0.1545 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6059 1.9814 0.8423 31 1 3.1263 1.4439 0.0888 32 1 1.7509 1.9301 -0.9310 33 1 1.5926 -0.2723 2.1360 34 1 3.1248 -0.6301 1.3040 35 1 1.3737 -4.7055 1.9182 36 1 3.2526 -4.7746 4.0257 37 1 1.6550 -4.3920 4.7109 38 1 0.7156 -6.4309 3.6569 39 1 2.3135 -6.8129 2.9720 40 1 2.5930 -6.4994 5.7653 41 1 3.1045 -8.7242 8.1974 42 1 0.7261 -3.7107 -1.1159 43 1 2.6742 -4.5095 -2.6836 44 1 4.4289 -2.3692 0.4788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130001513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:46 Heat of formation + Delta-G solvation = 26.387286 kcal Electronic energy + Delta-G solvation = -23646.819865 eV Core-core repulsion = 20214.363505 eV Total energy + Delta-G solvation = -3432.456360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43529 -39.89228 -37.25666 -35.81069 -34.19119 -33.71339 -31.27453 -30.09628 -29.16216 -27.93107 -27.59166 -25.11145 -23.49218 -21.91455 -21.60932 -21.46866 -20.58988 -19.99020 -18.11667 -17.34626 -16.96367 -16.28558 -15.61194 -15.29083 -14.78835 -14.67907 -14.59426 -14.38811 -14.15238 -13.89257 -13.72347 -13.47517 -13.25180 -13.02481 -12.91240 -12.64445 -12.56157 -12.11256 -11.55864 -11.33748 -11.18861 -11.17158 -11.04206 -10.88974 -10.84390 -10.54830 -10.14718 -10.12331 -9.83970 -9.58168 -9.14262 -8.93862 -8.68612 -7.04681 -5.83625 -3.14829 1.80423 1.96292 2.85225 2.90310 3.05666 3.40158 3.45000 3.46882 4.07255 4.20913 4.40252 4.52261 4.56423 4.58392 4.58897 4.70164 4.81904 5.21518 5.24492 5.26291 5.33165 5.38520 5.44293 5.44736 5.48126 5.52262 5.56065 5.66846 5.76941 5.85548 5.86658 5.96300 6.02208 6.04328 6.31136 6.54866 6.59439 6.61029 6.92247 7.31696 7.62137 7.91844 7.96664 8.33672 9.45169 9.98591 10.33454 11.38907 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002947 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.178058 B = 9498.001036 C =10145.676571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.118 3.882 6 H 0.124 0.876 7 C 0.501 3.499 8 O -0.523 6.523 9 N -0.710 5.710 10 C 0.110 3.890 11 C 0.146 3.854 12 N -0.729 5.729 13 C -0.246 4.246 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 N -0.449 5.449 22 C -0.059 4.059 23 C -0.025 4.025 24 N -0.491 5.491 25 C 0.194 3.806 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 18.023 -18.242 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.148 4.148 5 C 0.011 3.989 6 H 0.142 0.858 7 C 0.284 3.716 8 O -0.398 6.398 9 N -0.361 5.361 10 C -0.014 4.014 11 C 0.017 3.983 12 N -0.374 5.374 13 C -0.377 4.377 14 H 0.090 0.910 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 N -0.134 5.134 22 C -0.191 4.191 23 C -0.173 4.173 24 N -0.209 5.209 25 C -0.089 4.089 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.192 0.808 43 H 0.186 0.814 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.694 18.211 -17.794 25.890 hybrid contribution -1.106 -1.090 0.455 1.618 sum -5.800 17.121 -17.339 25.048 Atomic orbital electron populations 1.21923 0.95019 1.01593 1.02262 1.21134 0.96009 0.96700 0.97809 1.21799 1.01249 0.95323 1.01892 1.21848 1.03173 0.90099 0.99652 1.21773 0.99389 0.94526 0.83218 0.85808 1.20448 0.79844 0.82675 0.88652 1.90768 1.41604 1.64418 1.43044 1.45944 1.61396 1.09095 1.19659 1.21665 1.01063 0.93856 0.84776 1.20738 0.97411 0.88651 0.91466 1.42174 1.73429 1.07925 1.13874 1.19183 1.33589 0.85109 0.99770 0.91027 1.24785 1.01144 0.98351 0.96467 1.69665 1.46444 1.35317 1.06413 0.86141 0.77869 0.84841 0.77013 1.21547 1.21642 1.20682 1.45479 1.07915 1.40947 1.19084 1.22758 1.00323 1.04089 0.91946 1.22309 0.87988 1.05140 1.01830 1.70359 1.28356 1.13709 1.08480 1.24957 0.83631 1.02693 0.97570 0.92241 0.92378 0.92903 0.90893 0.92420 0.92452 0.92561 0.88756 0.90087 0.76557 0.91022 0.90921 0.95835 0.95778 0.77992 0.93307 0.80835 0.81378 0.78351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.97 37.16 0.33 -0.52 16 2 C -0.10 -0.65 2.86 -90.62 -0.26 -0.91 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C -0.11 -0.88 3.43 -26.73 -0.09 -0.97 16 5 C 0.12 1.00 2.65 -69.08 -0.18 0.82 16 6 H 0.12 0.79 6.32 -51.93 -0.33 0.46 16 7 C 0.50 6.25 7.16 -10.99 -0.08 6.17 16 8 O -0.52 -8.39 15.91 5.55 0.09 -8.30 16 9 N -0.71 -9.15 5.56 -60.30 -0.33 -9.48 16 10 C 0.11 1.82 5.79 -4.05 -0.02 1.80 16 11 C 0.15 2.82 6.37 -4.04 -0.03 2.80 16 12 N -0.73 -18.42 5.60 -59.91 -0.34 -18.76 16 13 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 17 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 N -0.45 -4.08 1.97 -112.69 -0.22 -4.30 16 22 C -0.06 -0.50 11.55 -16.56 -0.19 -0.69 16 23 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 24 N -0.49 -6.32 11.25 -14.67 -0.17 -6.49 16 25 C 0.19 2.17 11.57 -90.37 -1.05 1.12 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 6.49 -51.93 -0.34 -0.06 16 29 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 34 H 0.08 0.72 7.56 -51.93 -0.39 0.32 16 35 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.20 1.98 7.89 -52.49 -0.41 1.57 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -33.52 366.62 -8.56 -42.09 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.13 Total: 8.75 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.68 Total: 1.16 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.33 Total: -66.47 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.52 -8.56 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130001513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.472 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds