Wall clock time and date at job start Tue Mar 31 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47117 * 2 1 4 4 N 1.28444 * 125.18563 * 85.75979 * 3 2 1 5 5 C 1.30873 * 110.92369 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.06863 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47344 * 265.02367 * 6 5 4 8 8 C 1.53006 * 109.47000 * 145.02101 * 6 5 4 9 9 C 1.39672 * 107.86076 * 0.26055 * 5 4 3 10 10 C 1.36595 * 125.19326 * 265.75733 * 3 2 1 11 11 C 1.47168 * 126.88188 * 0.02562 * 10 3 2 12 12 O 1.21629 * 120.00048 * 5.25115 * 11 10 3 13 13 N 1.34774 * 119.99904 * 185.25993 * 11 10 3 14 14 C 1.46500 * 119.99842 * 185.12739 * 13 11 10 15 15 C 1.53004 * 109.47075 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47075 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00166 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99342 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99990 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47476 * 59.99911 * 21 19 17 23 23 H 1.48504 * 109.46918 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47001 * 299.99586 * 21 19 17 25 25 H 1.08997 * 109.47073 * 59.99940 * 1 2 3 26 26 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47133 * 299.99488 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00155 * 2 1 3 29 29 H 1.08997 * 109.47073 * 120.00060 * 2 1 3 30 30 H 1.08999 * 109.47149 * 25.02898 * 6 5 4 31 31 H 1.09000 * 109.47024 * 60.00095 * 7 6 5 32 32 H 1.09002 * 109.47313 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47391 * 299.99805 * 7 6 5 34 34 H 1.09002 * 109.47081 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.47098 * 300.00393 * 8 6 5 36 36 H 1.08999 * 109.46519 * 60.00411 * 8 6 5 37 37 H 1.07996 * 127.32052 * 179.73868 * 9 5 4 38 38 H 0.96995 * 120.00402 * 5.12226 * 13 11 10 39 39 H 1.09004 * 109.47177 * 299.99828 * 14 13 11 40 40 H 1.09004 * 109.47206 * 59.99933 * 14 13 11 41 41 H 1.09000 * 109.46887 * 299.99757 * 15 14 13 42 42 H 1.08997 * 109.46602 * 60.00307 * 15 14 13 43 43 H 0.97006 * 120.00193 * 0.02562 * 16 15 14 44 44 H 0.97002 * 119.99895 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1919 2.1049 1.0469 5 6 2.6366 3.2929 0.7253 6 6 2.9555 4.4105 1.6846 7 6 1.7455 5.3387 1.8067 8 6 4.1559 5.2032 1.1632 9 6 2.7570 3.3434 -0.6653 10 6 2.3586 2.0959 -1.1132 11 6 2.3048 1.6345 -2.5097 12 8 1.8365 0.5430 -2.7719 13 7 2.7746 2.4213 -3.4979 14 6 2.6197 2.0124 -4.8961 15 6 3.2339 3.0752 -5.8094 16 7 3.0795 2.6660 -7.2076 17 6 3.5569 3.4653 -8.2117 18 1 4.0469 4.3977 -7.9728 19 6 3.4101 3.0779 -9.5365 20 7 2.8125 1.9418 -9.8275 21 14 4.0608 4.1686 -10.9062 22 1 5.5263 4.3454 -10.7445 23 1 3.7812 3.5340 -12.2194 24 1 3.3925 5.4933 -10.8438 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1933 3.9928 2.6629 31 1 0.8904 4.7740 2.1782 32 1 1.9763 6.1473 2.5003 33 1 1.5078 5.7565 0.8284 34 1 4.3863 6.0119 1.8568 35 1 5.0179 4.5419 1.0762 36 1 3.9181 5.6209 0.1849 37 1 3.0925 4.1775 -1.2636 38 1 3.2153 3.2584 -3.2834 39 1 3.1260 1.0601 -5.0544 40 1 1.5601 1.9033 -5.1275 41 1 2.7272 4.0272 -5.6510 42 1 4.2934 3.1845 -5.5781 43 1 2.6390 1.8287 -7.4221 44 1 2.7102 1.6709 -10.7533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130781369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:09 Heat of formation + Delta-G solvation = 35.418133 kcal Electronic energy + Delta-G solvation = -23231.388535 eV Core-core repulsion = 19799.323782 eV Total energy + Delta-G solvation = -3432.064754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74083 -39.35915 -36.42229 -35.71376 -34.16520 -33.65373 -31.67168 -30.73338 -29.41136 -27.76849 -27.35547 -24.44630 -24.05589 -23.16827 -22.04961 -21.46554 -20.46724 -19.35410 -17.89941 -17.19700 -16.47021 -16.10067 -15.62370 -15.19171 -14.80931 -14.72132 -14.54381 -14.33168 -14.05294 -13.73103 -13.44752 -13.35686 -13.17361 -12.91968 -12.68900 -12.33443 -12.29694 -11.72865 -11.53954 -11.46710 -11.38154 -11.35917 -11.14800 -10.87011 -10.81653 -10.68129 -10.19870 -10.06879 -9.77286 -9.31731 -9.04575 -9.00907 -8.87242 -7.02629 -5.81944 -3.13004 1.16682 2.21779 2.40125 3.15527 3.17644 3.41553 3.45960 3.47210 4.15206 4.44023 4.56551 4.62961 4.71596 4.77086 4.93263 5.04776 5.06299 5.14578 5.31591 5.38959 5.39929 5.44719 5.46247 5.47020 5.57352 5.62610 5.71246 5.73040 5.79195 5.85916 5.90211 6.01274 6.06945 6.08949 6.32975 6.38697 6.61773 6.64980 6.65983 7.42956 7.63282 7.94432 8.11333 8.35563 9.46881 10.00848 10.35533 11.40555 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002865 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.127475 B = 9770.275352 C =11005.337472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.254 5.254 4 N -0.277 5.277 5 C 0.030 3.970 6 C -0.009 4.009 7 C -0.142 4.142 8 C -0.144 4.144 9 C -0.184 4.184 10 C -0.031 4.031 11 C 0.587 3.413 12 O -0.540 6.540 13 N -0.705 5.705 14 C 0.113 3.887 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.159 0.841 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.386 0.614 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 2.668 25.432 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.041 5.041 4 N -0.110 5.110 5 C -0.126 4.126 6 C -0.029 4.029 7 C -0.200 4.200 8 C -0.202 4.202 9 C -0.213 4.213 10 C -0.160 4.160 11 C 0.372 3.628 12 O -0.418 6.418 13 N -0.356 5.356 14 C -0.011 4.011 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.177 0.823 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.220 0.780 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.802 1.163 26.000 26.089 hybrid contribution 0.582 1.110 -1.499 1.954 sum -1.220 2.273 24.501 24.636 Atomic orbital electron populations 1.22069 0.93428 1.03491 1.03062 1.22207 0.96313 0.76474 1.05780 1.45763 1.44342 1.12258 1.01781 1.73088 1.19303 1.04785 1.13797 1.21904 1.03854 0.93327 0.93549 1.19404 0.95946 0.91057 0.96468 1.21817 0.97207 0.98794 1.02184 1.21836 0.97025 0.99734 1.01619 1.22061 1.07537 0.96737 0.94974 1.21442 1.10563 0.94032 0.89958 1.16896 0.78510 0.84423 0.82978 1.90786 1.46549 1.20603 1.83901 1.45610 1.59188 1.24306 1.06508 1.21663 1.02013 0.99510 0.77885 1.20758 0.97341 0.94448 0.85843 1.42169 1.71079 1.25442 0.98743 1.19146 1.31130 1.01404 0.85974 0.91033 1.24778 1.01158 0.97519 0.97290 1.69657 1.47771 1.22255 1.18222 0.86220 0.78582 0.79608 0.81459 1.21159 1.21604 1.21148 0.91510 0.90100 0.91969 0.86353 0.88656 0.89970 0.92625 0.92060 0.92261 0.91985 0.92343 0.92025 0.82321 0.76223 0.90843 0.90968 0.95642 0.95642 0.77986 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.18 6.58 -4.04 -0.03 1.15 16 3 N -0.25 -3.21 3.35 -57.14 -0.19 -3.40 16 4 N -0.28 -3.50 11.90 33.64 0.40 -3.10 16 5 C 0.03 0.33 6.12 -82.47 -0.51 -0.17 16 6 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 7 C -0.14 -1.05 9.18 37.15 0.34 -0.71 16 8 C -0.14 -0.98 8.79 37.16 0.33 -0.65 16 9 C -0.18 -2.03 9.65 -38.98 -0.38 -2.40 16 10 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 11 C 0.59 8.58 7.78 -12.64 -0.10 8.48 16 12 O -0.54 -9.26 14.68 5.25 0.08 -9.19 16 13 N -0.71 -9.57 5.53 -61.46 -0.34 -9.91 16 14 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 15 C 0.14 2.74 6.37 -4.04 -0.03 2.72 16 16 N -0.73 -18.21 5.60 -59.91 -0.34 -18.54 16 17 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.12 1.37 6.19 -51.93 -0.32 1.05 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.40 7.37 -51.93 -0.38 0.01 16 37 H 0.16 1.34 7.09 -52.49 -0.37 0.97 16 38 H 0.40 4.39 7.56 -40.82 -0.31 4.09 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.39 10.20 7.67 -40.82 -0.31 9.89 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -32.77 367.34 -7.45 -40.22 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.16 Total: 8.22 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.13 Total: 0.40 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.26 Total: -62.25 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.77 -7.45 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130781369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.635 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds