Wall clock time and date at job start Tue Mar 31 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47117 * 2 1 4 4 N 1.28444 * 125.18563 * 85.75979 * 3 2 1 5 5 C 1.30873 * 110.92369 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.06863 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47344 * 265.02367 * 6 5 4 8 8 C 1.53006 * 109.47000 * 145.02101 * 6 5 4 9 9 C 1.39672 * 107.86076 * 0.26055 * 5 4 3 10 10 C 1.36595 * 125.19326 * 265.75733 * 3 2 1 11 11 C 1.47168 * 126.88188 * 0.02562 * 10 3 2 12 12 O 1.21629 * 120.00048 * 5.25115 * 11 10 3 13 13 N 1.34774 * 119.99904 * 185.25993 * 11 10 3 14 14 C 1.46500 * 119.99842 * 185.12739 * 13 11 10 15 15 C 1.53004 * 109.47075 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47075 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00166 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99342 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99990 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47476 * 59.99911 * 21 19 17 23 23 H 1.48504 * 109.46918 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47001 * 299.99586 * 21 19 17 25 25 H 1.08997 * 109.47073 * 59.99940 * 1 2 3 26 26 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47133 * 299.99488 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00155 * 2 1 3 29 29 H 1.08997 * 109.47073 * 120.00060 * 2 1 3 30 30 H 1.08999 * 109.47149 * 25.02898 * 6 5 4 31 31 H 1.09000 * 109.47024 * 60.00095 * 7 6 5 32 32 H 1.09002 * 109.47313 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47391 * 299.99805 * 7 6 5 34 34 H 1.09002 * 109.47081 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.47098 * 300.00393 * 8 6 5 36 36 H 1.08999 * 109.46519 * 60.00411 * 8 6 5 37 37 H 1.07996 * 127.32052 * 179.73868 * 9 5 4 38 38 H 0.96995 * 120.00402 * 5.12226 * 13 11 10 39 39 H 1.09004 * 109.47177 * 299.99828 * 14 13 11 40 40 H 1.09004 * 109.47206 * 59.99933 * 14 13 11 41 41 H 1.09000 * 109.46887 * 299.99757 * 15 14 13 42 42 H 1.08997 * 109.46602 * 60.00307 * 15 14 13 43 43 H 0.97006 * 120.00193 * 0.02562 * 16 15 14 44 44 H 0.97002 * 119.99895 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1919 2.1049 1.0469 5 6 2.6366 3.2929 0.7253 6 6 2.9555 4.4105 1.6846 7 6 1.7455 5.3387 1.8067 8 6 4.1559 5.2032 1.1632 9 6 2.7570 3.3434 -0.6653 10 6 2.3586 2.0959 -1.1132 11 6 2.3048 1.6345 -2.5097 12 8 1.8365 0.5430 -2.7719 13 7 2.7746 2.4213 -3.4979 14 6 2.6197 2.0124 -4.8961 15 6 3.2339 3.0752 -5.8094 16 7 3.0795 2.6660 -7.2076 17 6 3.5569 3.4653 -8.2117 18 1 4.0469 4.3977 -7.9728 19 6 3.4101 3.0779 -9.5365 20 7 2.8125 1.9418 -9.8275 21 14 4.0608 4.1686 -10.9062 22 1 5.5263 4.3454 -10.7445 23 1 3.7812 3.5340 -12.2194 24 1 3.3925 5.4933 -10.8438 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1933 3.9928 2.6629 31 1 0.8904 4.7740 2.1782 32 1 1.9763 6.1473 2.5003 33 1 1.5078 5.7565 0.8284 34 1 4.3863 6.0119 1.8568 35 1 5.0179 4.5419 1.0762 36 1 3.9181 5.6209 0.1849 37 1 3.0925 4.1775 -1.2636 38 1 3.2153 3.2584 -3.2834 39 1 3.1260 1.0601 -5.0544 40 1 1.5601 1.9033 -5.1275 41 1 2.7272 4.0272 -5.6510 42 1 4.2934 3.1845 -5.5781 43 1 2.6390 1.8287 -7.4221 44 1 2.7102 1.6709 -10.7533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130781369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:09 Heat of formation + Delta-G solvation = 13.194094 kcal Electronic energy + Delta-G solvation = -23232.352242 eV Core-core repulsion = 19799.323782 eV Total energy + Delta-G solvation = -3433.028460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.65264 -40.56181 -37.45656 -36.96581 -35.62949 -34.58899 -33.31092 -32.03477 -30.22760 -29.35255 -27.91951 -25.92719 -25.05861 -24.35507 -23.32261 -22.70340 -21.40982 -20.33474 -19.29281 -18.77266 -17.50412 -17.16780 -16.75642 -16.47567 -16.41937 -15.75263 -15.60359 -15.15299 -15.11033 -15.06847 -14.93030 -14.72430 -14.20656 -14.04474 -13.40271 -13.11656 -13.08891 -13.03282 -12.84959 -12.63659 -12.54562 -12.41947 -12.22132 -12.11546 -12.10436 -11.98368 -11.86227 -11.44482 -11.24092 -10.97171 -10.41602 -10.05421 -9.88945 -9.05674 -7.95968 -5.27240 0.16174 1.29145 1.49937 1.52955 1.53205 1.59260 2.04643 2.08189 2.58494 3.36098 3.38538 3.44636 3.82896 3.96974 3.97554 4.02835 4.15942 4.21052 4.25637 4.27332 4.34512 4.43036 4.53135 4.57877 4.64265 4.72722 4.81822 4.91808 4.98101 5.06558 5.08054 5.10892 5.13032 5.22975 5.26763 5.44697 5.48766 5.49751 5.55519 5.73826 6.24815 6.32704 6.95989 7.07195 7.31405 8.03053 8.25702 9.27515 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002865 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.127475 B = 9770.275352 C =11005.337472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.262 5.262 4 N -0.292 5.292 5 C 0.026 3.974 6 C -0.008 4.008 7 C -0.139 4.139 8 C -0.142 4.142 9 C -0.173 4.173 10 C -0.053 4.053 11 C 0.588 3.412 12 O -0.571 6.571 13 N -0.693 5.693 14 C 0.131 3.869 15 C 0.148 3.852 16 N -0.747 5.747 17 C -0.249 4.249 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.275 1.275 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.186 0.814 38 H 0.418 0.582 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 4.697 26.778 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.049 5.049 4 N -0.124 5.124 5 C -0.131 4.131 6 C -0.028 4.028 7 C -0.197 4.197 8 C -0.199 4.199 9 C -0.202 4.202 10 C -0.182 4.182 11 C 0.375 3.625 12 O -0.451 6.451 13 N -0.345 5.345 14 C 0.006 3.994 15 C 0.021 3.979 16 N -0.390 5.390 17 C -0.380 4.380 18 H 0.102 0.898 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.807 3.193 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.201 1.201 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.203 0.797 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.206 0.794 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.910 3.244 27.402 27.609 hybrid contribution 0.314 0.496 -1.775 1.870 sum -0.596 3.740 25.627 25.905 Atomic orbital electron populations 1.22010 0.92774 1.04540 1.01875 1.22320 0.96843 0.76008 1.06040 1.45969 1.44536 1.12787 1.01651 1.73089 1.19792 1.05585 1.13983 1.22454 1.02930 0.93462 0.94212 1.19536 0.96957 0.90476 0.95869 1.21796 0.96318 0.98938 1.02611 1.21832 0.95939 0.99844 1.02318 1.22421 1.05997 0.96499 0.95236 1.21337 1.12475 0.95151 0.89201 1.17111 0.77765 0.83932 0.83726 1.90773 1.47871 1.21999 1.84465 1.45349 1.59197 1.24859 1.05076 1.21239 1.00808 0.98217 0.79091 1.20850 0.98276 0.95373 0.83363 1.42400 1.70910 1.24869 1.00838 1.19619 1.29923 1.01717 0.86756 0.89837 1.25651 1.02254 0.99039 0.99872 1.69827 1.49845 1.24276 1.18180 0.85146 0.78318 0.77961 0.77923 1.20128 1.22402 1.20075 0.93839 0.87999 0.91763 0.87714 0.86690 0.89943 0.93849 0.90147 0.92315 0.90350 0.92883 0.91487 0.79729 0.74398 0.92200 0.92167 0.94185 0.94323 0.79392 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 10.24 71.98 0.74 -2.17 16 2 C 0.11 2.24 6.58 86.38 0.57 2.81 16 3 N -0.26 -6.49 3.35 -334.69 -1.12 -7.61 16 4 N -0.29 -7.08 11.90 -47.49 -0.57 -7.65 16 5 C 0.03 0.53 6.12 43.05 0.26 0.79 16 6 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 7 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 8 C -0.14 -1.52 8.79 71.98 0.63 -0.89 16 9 C -0.17 -3.47 9.65 22.66 0.22 -3.25 16 10 C -0.05 -1.35 6.96 40.79 0.28 -1.07 16 11 C 0.59 17.03 7.78 86.59 0.67 17.70 16 12 O -0.57 -19.97 14.68 -4.12 -0.06 -20.03 16 13 N -0.69 -18.03 5.53 -466.61 -2.58 -20.61 16 14 C 0.13 4.28 5.79 86.38 0.50 4.78 16 15 C 0.15 5.43 6.37 86.38 0.55 5.98 16 16 N -0.75 -37.13 5.60 -343.45 -1.92 -39.05 16 17 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 21 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 2.49 6.19 -2.39 -0.01 2.48 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.65 7.37 -2.39 -0.02 0.63 16 37 H 0.19 2.55 7.09 -2.91 -0.02 2.53 16 38 H 0.42 8.19 7.56 -92.71 -0.70 7.49 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.37 20.13 7.67 -92.70 -0.71 19.42 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.24 367.34 2.01 -68.23 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.41 Total: 31.61 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 6.36 Total: 6.93 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -5.91 Total: -133.94 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.03 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.24 2.01 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130781369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.424 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds