Wall clock time and date at job start Tue Mar 31 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46820 * 122.70705 * 3 2 1 5 5 C 1.42896 * 113.99640 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47014 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47233 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00421 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00542 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.49762 * 325.06876 * 10 9 7 12 12 C 1.53043 * 109.49907 * 205.00281 * 10 9 7 13 13 C 1.53044 * 109.53502 * 178.68188 * 12 10 9 14 14 C 1.53201 * 109.31094 * 61.36805 * 13 12 10 15 15 H 1.09000 * 109.59025 * 65.29139 * 14 13 12 16 16 C 1.53000 * 109.58323 * 185.57611 * 14 13 12 17 17 N 1.46929 * 108.77082 * 305.36025 * 14 13 12 18 18 C 1.36938 * 120.62622 * 233.62886 * 17 14 13 19 19 H 1.08002 * 120.00101 * 41.13695 * 18 17 14 20 20 C 1.38814 * 119.99965 * 221.12801 * 18 17 14 21 21 N 1.31615 * 120.00158 * 214.88506 * 20 18 17 22 22 Si 1.86797 * 119.99882 * 34.89179 * 20 18 17 23 23 H 1.48503 * 109.47447 * 84.62054 * 22 20 18 24 24 H 1.48497 * 109.47281 * 204.62389 * 22 20 18 25 25 H 1.48507 * 109.47239 * 324.62389 * 22 20 18 26 26 C 1.46920 * 118.74314 * 53.61237 * 17 14 13 27 27 H 4.38448 * 5.44395 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46645 * 242.70397 * 3 2 1 29 29 H 1.08992 * 109.47070 * 2.70337 * 3 2 1 30 30 H 1.09008 * 109.47161 * 299.99948 * 5 4 3 31 31 H 1.08995 * 109.47848 * 59.99699 * 5 4 3 32 32 H 1.08991 * 109.46993 * 299.99933 * 6 5 4 33 33 H 1.09000 * 109.46999 * 59.99963 * 6 5 4 34 34 H 0.97009 * 119.99477 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.45637 * 298.70231 * 12 10 9 36 36 H 1.08999 * 109.46150 * 58.66433 * 12 10 9 37 37 H 1.09001 * 109.49338 * 181.30872 * 13 12 10 38 38 H 1.08993 * 109.49899 * 301.41534 * 13 12 10 39 39 H 1.09003 * 109.47229 * 59.99777 * 16 14 13 40 40 H 1.09001 * 109.46813 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47027 * 299.99414 * 16 14 13 42 42 H 0.96997 * 120.00329 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.59153 * 186.59829 * 26 17 14 44 44 H 1.09004 * 109.58681 * 66.17541 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.7289 -1.1337 5 6 4.5465 0.7910 -1.2283 6 6 4.9406 1.5893 -2.4726 7 6 6.4429 1.6554 -2.5721 8 8 7.1306 1.1165 -1.7309 9 7 7.0222 2.3124 -3.5963 10 6 8.4826 2.3771 -3.6928 11 1 8.9110 2.4359 -2.6922 12 6 8.8872 3.6158 -4.4953 13 6 10.4134 3.7020 -4.5687 14 6 10.9570 2.4623 -5.2860 15 1 10.6221 2.4640 -6.3232 16 6 12.4863 2.4731 -5.2408 17 7 10.4525 1.2624 -4.6044 18 6 11.3158 0.2933 -4.1677 19 1 12.2487 0.5719 -3.7003 20 6 10.9917 -1.0472 -4.3255 21 7 11.3522 -1.9235 -3.4120 22 14 10.0439 -1.6075 -5.8345 23 1 10.9904 -1.8431 -6.9544 24 1 9.3199 -2.8666 -5.5251 25 1 9.0679 -0.5582 -6.2240 26 6 9.0044 1.1223 -4.4000 27 1 -1.0501 0.0000 0.0003 28 1 3.0091 0.4721 0.9132 29 1 3.0098 -1.0256 -0.0485 30 1 4.9487 1.2791 -0.3405 31 1 4.9502 -0.2188 -1.3020 32 1 4.5385 1.1009 -3.3601 33 1 4.5370 2.5992 -2.3992 34 1 6.4721 2.7431 -4.2694 35 1 8.4786 3.5447 -5.5033 36 1 8.4960 4.5084 -4.0072 37 1 10.7010 4.5969 -5.1205 38 1 10.8240 3.7481 -3.5601 39 1 12.8192 2.4663 -4.2029 40 1 12.8711 1.5901 -5.7512 41 1 12.8581 3.3702 -5.7358 42 1 11.1261 -2.8602 -3.5225 43 1 8.8054 0.2458 -3.7834 44 1 8.5081 1.0134 -5.3644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132041631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:37 Heat of formation + Delta-G solvation = -34.419306 kcal Electronic energy + Delta-G solvation = -23765.129916 eV Core-core repulsion = 20297.744032 eV Total energy + Delta-G solvation = -3467.385883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08769 -39.53152 -38.92830 -36.05218 -34.63611 -34.46791 -32.95464 -32.54687 -31.64235 -28.19131 -27.67431 -26.61923 -24.74550 -24.00668 -22.16459 -21.51106 -20.86087 -19.42164 -18.52685 -18.33650 -17.53700 -17.46059 -17.00281 -16.52899 -16.38311 -16.00071 -15.84069 -15.36686 -15.07384 -14.81107 -14.56212 -14.51112 -14.17890 -13.80788 -13.54711 -13.35608 -12.96360 -12.75150 -12.68542 -12.60839 -12.51086 -12.45631 -12.08396 -11.80304 -11.64797 -11.56113 -11.47906 -11.46757 -11.22228 -10.88107 -10.61285 -10.53790 -10.08680 -8.60860 -8.26995 -5.52258 1.33032 1.38401 1.42288 1.46792 1.63949 1.80658 2.13485 2.45869 2.88193 3.01952 3.46467 3.60212 3.72279 3.90470 4.01804 4.08635 4.16626 4.22422 4.29891 4.34297 4.41081 4.48399 4.54580 4.67789 4.72763 4.77598 4.82035 4.88794 4.99706 5.01305 5.04651 5.08388 5.17503 5.22080 5.30407 5.51718 5.55634 5.68383 5.93956 6.01583 6.26537 6.57959 6.60342 7.02319 7.32464 7.67608 8.16098 8.93305 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003542 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.647183 B = 7902.252015 C = 8916.696571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.240 4.240 3 C 0.165 3.835 4 O -0.395 6.395 5 C 0.078 3.922 6 C -0.125 4.125 7 C 0.507 3.493 8 O -0.588 6.588 9 N -0.709 5.709 10 C 0.134 3.866 11 H 0.051 0.949 12 C -0.107 4.107 13 C -0.120 4.120 14 C 0.151 3.849 15 H 0.042 0.958 16 C -0.129 4.129 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.043 0.957 20 C -0.007 4.007 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.307 1.307 25 H -0.242 1.242 26 C 0.142 3.858 27 H 0.257 0.743 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.419 0.581 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.260 0.740 43 H 0.021 0.979 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.440 12.953 -0.849 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.241 4.241 3 C 0.090 3.910 4 O -0.316 6.316 5 C 0.002 3.998 6 C -0.164 4.164 7 C 0.295 3.705 8 O -0.468 6.468 9 N -0.361 5.361 10 C 0.028 3.972 11 H 0.070 0.930 12 C -0.144 4.144 13 C -0.159 4.159 14 C 0.047 3.953 15 H 0.060 0.940 16 C -0.186 4.186 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.061 0.939 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.166 1.166 26 C 0.015 3.985 27 H 0.273 0.727 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.256 0.744 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.031 12.520 -0.346 21.954 hybrid contribution -0.041 -1.310 -0.351 1.357 sum -18.072 11.209 -0.697 21.277 Atomic orbital electron populations 1.25878 0.96739 0.98111 0.96643 1.23013 0.94713 1.02826 1.03500 1.19215 0.84896 0.97259 0.89642 1.87805 1.21526 1.75460 1.46767 1.22100 0.79613 0.99910 0.98215 1.21398 0.89609 1.05025 1.00386 1.21068 0.91309 0.77303 0.80838 1.90781 1.66713 1.46933 1.42409 1.45894 1.07233 1.55367 1.27608 1.21390 0.79442 0.96979 0.99405 0.93050 1.21658 0.96583 0.95651 1.00555 1.21952 0.94846 0.98363 1.00763 1.20948 0.93973 0.86199 0.94216 0.93981 1.21712 0.95178 1.01005 1.00743 1.44434 1.01397 1.20521 1.66715 1.18461 1.02785 0.85355 1.32130 0.93895 1.26154 0.98898 0.96355 0.99124 1.70200 1.50665 1.03375 1.32957 0.86366 0.79458 0.77538 0.83487 1.21313 1.23422 1.16587 1.21524 0.84511 0.96001 0.96428 0.72732 0.89470 0.90079 0.92322 0.93470 0.86181 0.85055 0.74373 0.89776 0.89358 0.88283 0.93530 0.94617 0.94401 0.90040 0.93071 0.96010 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 19.25 74.32 1.43 -1.00 16 2 C -0.24 -4.90 13.73 31.12 0.43 -4.47 16 3 C 0.17 3.31 6.41 70.18 0.45 3.76 16 4 O -0.40 -9.23 10.30 -148.98 -1.53 -10.76 16 5 C 0.08 1.88 5.23 71.98 0.38 2.25 16 6 C -0.12 -2.56 6.07 29.85 0.18 -2.38 16 7 C 0.51 15.32 7.80 87.66 0.68 16.00 16 8 O -0.59 -24.95 15.65 -3.03 -0.05 -25.00 16 9 N -0.71 -18.70 5.08 -442.17 -2.25 -20.94 16 10 C 0.13 4.59 2.60 45.07 0.12 4.71 16 11 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 12 C -0.11 -2.64 5.35 30.62 0.16 -2.48 16 13 C -0.12 -3.38 5.37 30.68 0.16 -3.21 16 14 C 0.15 5.50 3.50 44.98 0.16 5.66 16 15 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.13 -4.62 8.07 71.98 0.58 -4.04 16 17 N -0.61 -28.52 2.47 -675.21 -1.67 -30.19 16 18 C -0.26 -14.81 8.43 84.03 0.71 -14.10 16 19 H 0.04 2.71 6.81 -2.91 -0.02 2.69 16 20 C -0.01 -0.41 4.82 84.86 0.41 0.00 16 21 N -0.93 -60.33 13.97 21.65 0.30 -60.03 16 22 Si 0.90 46.36 27.39 68.60 1.88 48.24 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 25 H -0.24 -11.39 5.24 99.48 0.52 -10.87 16 26 C 0.14 6.22 4.17 86.36 0.36 6.58 16 27 H 0.26 1.58 7.80 -4.41 -0.03 1.54 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.43 8.10 -2.38 -0.02 1.41 16 31 H 0.05 1.27 8.10 -2.39 -0.02 1.26 16 32 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.42 7.10 8.60 -92.70 -0.80 6.30 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.03 1.40 7.38 -2.39 -0.02 1.38 16 40 H 0.04 1.51 7.71 -2.39 -0.02 1.50 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.02 1.15 7.01 -2.39 -0.02 1.13 16 44 H 0.03 1.38 6.71 -2.38 -0.02 1.36 16 Total: -1.00 -80.77 360.65 2.89 -77.88 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.01 Total: 13.52 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.21 Total: 7.28 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -3.61 Total: -111.15 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.58 Total: -35.76 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Total: -80.77 2.89 -77.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132041631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.462 kcal (2) G-P(sol) polarization free energy of solvation -80.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds