Wall clock time and date at job start Tue Mar 31 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28449 * 125.18870 * 2 1 4 4 C 1.30864 * 110.92539 * 180.26487 * 3 2 1 5 5 C 1.50703 * 126.06676 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46821 * 255.03840 * 5 4 3 7 7 C 1.52999 * 109.47300 * 15.03927 * 5 4 3 8 8 C 1.52999 * 109.47178 * 135.04168 * 5 4 3 9 9 C 1.39670 * 107.86330 * 359.97438 * 4 3 2 10 10 C 1.36596 * 125.19096 * 180.30632 * 2 1 3 11 11 C 1.47164 * 126.88694 * 359.71275 * 10 2 1 12 12 O 1.21632 * 119.99607 * 5.01746 * 11 10 2 13 13 N 1.34773 * 120.00261 * 185.02023 * 11 10 2 14 14 C 1.46499 * 120.00097 * 185.09660 * 13 11 10 15 15 C 1.53000 * 109.47568 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47255 * 179.97438 * 15 14 13 17 17 C 1.36943 * 119.99748 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00091 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99733 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47022 * 90.00448 * 21 19 17 23 23 H 1.48503 * 109.47066 * 210.00449 * 21 19 17 24 24 H 1.48502 * 109.47416 * 330.00339 * 21 19 17 25 25 H 1.08998 * 109.46938 * 264.15214 * 1 2 3 26 26 H 1.08998 * 109.47020 * 24.15066 * 1 2 3 27 27 H 1.09001 * 109.46806 * 144.15293 * 1 2 3 28 28 H 1.08996 * 109.46916 * 60.00070 * 6 5 4 29 29 H 1.08997 * 109.46840 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.47137 * 300.00117 * 6 5 4 31 31 H 1.08994 * 109.47313 * 59.99698 * 7 5 4 32 32 H 1.08997 * 109.47122 * 180.02562 * 7 5 4 33 33 H 1.09003 * 109.46866 * 300.00031 * 7 5 4 34 34 H 1.09004 * 109.47260 * 59.99590 * 8 5 4 35 35 H 1.08997 * 109.47201 * 179.97438 * 8 5 4 36 36 H 1.09003 * 109.46754 * 299.99687 * 8 5 4 37 37 H 1.08005 * 127.32000 * 180.02562 * 9 4 3 38 38 H 0.97002 * 119.99999 * 5.10054 * 13 11 10 39 39 H 1.09009 * 109.46970 * 300.00099 * 14 13 11 40 40 H 1.08997 * 109.47333 * 59.99666 * 14 13 11 41 41 H 1.08999 * 109.46620 * 300.00448 * 15 14 13 42 42 H 1.09006 * 109.47092 * 59.99647 * 15 14 13 43 43 H 0.97001 * 120.00222 * 359.97438 * 16 15 14 44 44 H 0.97001 * 119.99992 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4735 0.7273 -0.0057 5 6 4.6335 1.6894 -0.0080 6 6 5.2583 1.7314 -1.4040 7 6 4.1383 3.0864 0.3713 8 6 5.6816 1.2270 1.0061 9 6 3.5612 -0.6666 -0.0091 10 6 2.2522 -1.1163 -0.0060 11 6 1.7994 -2.5165 -0.0076 12 8 0.6134 -2.7720 -0.0955 13 7 2.6986 -3.5158 0.0884 14 6 2.2604 -4.9090 -0.0252 15 6 3.4683 -5.8370 0.1191 16 7 3.0299 -7.2303 0.0060 17 6 3.9435 -8.2456 0.1047 18 1 4.9872 -8.0192 0.2655 19 6 3.5283 -9.5658 -0.0030 20 7 4.4064 -10.5416 0.0914 21 14 1.7232 -9.9573 -0.2818 22 1 1.4481 -10.0122 -1.7401 23 1 1.4008 -11.2703 0.3325 24 1 0.8855 -8.9007 0.3405 25 1 -0.3633 -0.1047 1.0223 26 1 -0.3633 0.9377 -0.4204 27 1 -0.3633 -0.8330 -0.6018 28 1 4.5116 2.0607 -2.1265 29 1 6.0976 2.4268 -1.4056 30 1 5.6112 0.7360 -1.6743 31 1 3.6931 3.0565 1.3658 32 1 4.9772 3.7823 0.3692 33 1 3.3916 3.4158 -0.3512 34 1 6.0344 0.2317 0.7359 35 1 6.5208 1.9226 1.0041 36 1 5.2364 1.1971 2.0007 37 1 4.4595 -1.2662 -0.0135 38 1 3.6360 -3.3124 0.2329 39 1 1.5383 -5.1281 0.7614 40 1 1.7958 -5.0655 -0.9987 41 1 4.1907 -5.6180 -0.6672 42 1 3.9325 -5.6804 1.0928 43 1 2.0925 -7.4336 -0.1380 44 1 4.1162 -11.4642 0.0165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133312117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:34 Heat of formation + Delta-G solvation = 18.879282 kcal Electronic energy + Delta-G solvation = -23263.454530 eV Core-core repulsion = 19830.672598 eV Total energy + Delta-G solvation = -3432.781932 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.65103 -40.58860 -37.95988 -37.44778 -35.68576 -33.77371 -33.37943 -32.17346 -29.73864 -28.16758 -28.03910 -27.73521 -25.67447 -23.95782 -23.28903 -22.84578 -21.44377 -20.13377 -19.52492 -18.51753 -17.45492 -17.41436 -16.73800 -16.51864 -16.26761 -15.75655 -15.65348 -15.20116 -15.09854 -14.97903 -14.87376 -14.66324 -14.41876 -13.72852 -13.51220 -13.39800 -13.22687 -12.97450 -12.94770 -12.72441 -12.61659 -12.47690 -12.25402 -12.07874 -11.95087 -11.82513 -11.82161 -11.41341 -11.29832 -11.03015 -10.42769 -10.06395 -9.87068 -9.35566 -8.04203 -5.39657 0.15536 1.31277 1.40169 1.42077 1.49280 1.52899 2.05470 2.08246 2.47755 3.27763 3.33823 3.42873 3.76467 3.81048 3.98389 4.08319 4.15141 4.18982 4.25311 4.28338 4.36479 4.52676 4.54059 4.60301 4.68392 4.87081 4.89693 4.97656 4.97906 5.09370 5.10382 5.11210 5.18130 5.23675 5.28697 5.48190 5.50924 5.53500 5.73839 5.74827 6.18455 6.31294 6.93840 7.04580 7.06123 7.78635 7.96043 9.16560 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.023459 B = 0.002829 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.284720 B = 9896.199399 C =10873.804149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.268 5.268 3 N -0.286 5.286 4 C 0.030 3.970 5 C 0.016 3.984 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.137 4.137 9 C -0.173 4.173 10 C -0.054 4.054 11 C 0.591 3.409 12 O -0.572 6.572 13 N -0.694 5.694 14 C 0.125 3.875 15 C 0.149 3.851 16 N -0.758 5.758 17 C -0.237 4.237 18 H 0.064 0.936 19 C -0.061 4.061 20 N -0.980 5.980 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.252 1.252 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.185 0.815 38 H 0.419 0.581 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.367 0.633 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 30.071 -0.287 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.055 5.055 3 N -0.119 5.119 4 C -0.126 4.126 5 C 0.014 3.986 6 C -0.193 4.193 7 C -0.189 4.189 8 C -0.195 4.195 9 C -0.202 4.202 10 C -0.182 4.182 11 C 0.378 3.622 12 O -0.452 6.452 13 N -0.346 5.346 14 C 0.001 3.999 15 C 0.023 3.977 16 N -0.405 5.405 17 C -0.367 4.367 18 H 0.082 0.918 19 C -0.253 4.253 20 N -0.631 5.631 21 Si 0.779 3.221 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.177 1.177 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.202 0.798 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.200 0.800 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.196 30.691 -0.324 30.859 hybrid contribution -0.249 -1.537 -0.057 1.558 sum -3.444 29.154 -0.381 29.360 Atomic orbital electron populations 1.22425 0.71590 1.06172 1.05306 1.45792 1.08512 1.01512 1.49705 1.73120 1.04501 1.13496 1.20826 1.22337 0.91796 0.93874 1.04567 1.19049 0.89657 0.92337 0.97555 1.21859 1.00606 1.02910 0.93928 1.21733 1.01270 0.94924 1.00934 1.21885 0.97693 1.02466 0.97476 1.22416 0.95685 0.95161 1.06963 1.21312 0.92234 0.89062 1.15579 1.17046 0.85302 0.83669 0.76217 1.90777 1.17344 1.85036 1.52087 1.45340 1.11905 1.05005 1.72340 1.21323 0.97201 0.79200 1.02204 1.20834 0.94623 0.82358 0.99927 1.42529 1.06625 1.01922 1.89406 1.19004 0.90869 0.86183 1.40676 0.91784 1.25491 1.01971 0.95387 1.02411 1.69867 1.35125 0.99263 1.58802 0.85454 0.80891 0.77505 0.78226 1.20365 1.22216 1.17656 0.89131 0.86951 0.88364 0.93690 0.90143 0.91955 0.93531 0.90603 0.93238 0.91414 0.90267 0.93174 0.79798 0.74364 0.91557 0.91305 0.93726 0.94008 0.79975 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 10.71 127.77 1.37 2.90 16 2 N -0.27 -6.20 3.75 -356.02 -1.33 -7.54 16 3 N -0.29 -6.57 11.23 -47.49 -0.53 -7.11 16 4 C 0.03 0.60 5.65 43.05 0.24 0.84 16 5 C 0.02 0.23 0.96 -52.93 -0.05 0.17 16 6 C -0.14 -1.65 8.46 71.98 0.61 -1.04 16 7 C -0.13 -1.82 8.04 71.98 0.58 -1.24 16 8 C -0.14 -1.54 8.20 71.98 0.59 -0.95 16 9 C -0.17 -3.30 9.78 22.66 0.22 -3.08 16 10 C -0.05 -1.26 6.96 40.79 0.28 -0.98 16 11 C 0.59 15.66 7.79 86.59 0.67 16.33 16 12 O -0.57 -18.39 14.81 -4.13 -0.06 -18.45 16 13 N -0.69 -16.28 5.54 -466.63 -2.58 -18.86 16 14 C 0.13 3.59 5.79 86.38 0.50 4.09 16 15 C 0.15 5.05 6.37 86.38 0.55 5.60 16 16 N -0.76 -34.03 5.41 -343.46 -1.86 -35.88 16 17 C -0.24 -13.12 10.47 84.03 0.88 -12.24 16 18 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 19 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.98 -61.92 13.97 21.65 0.30 -61.62 16 21 Si 0.95 44.85 27.74 68.60 1.90 46.75 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 1.99 6.55 -2.39 -0.02 1.97 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.07 0.68 7.60 -2.38 -0.02 0.66 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.18 2.38 7.35 -2.91 -0.02 2.36 16 38 H 0.42 7.42 7.55 -92.71 -0.70 6.72 16 39 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.37 15.90 5.53 -92.71 -0.51 15.38 16 44 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.41 362.72 2.48 -69.93 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.27 Total: 25.42 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.92 Total: 7.36 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -6.01 Total: -131.01 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -72.41 2.48 -69.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133312117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.807 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds