Wall clock time and date at job start Tue Mar 31 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47582 * 2 1 4 4 C 1.53009 * 109.47131 * 240.00141 * 2 1 3 5 5 C 1.52999 * 109.46984 * 175.00107 * 4 2 1 6 6 H 1.09000 * 109.47486 * 55.00077 * 5 4 2 7 7 C 1.53006 * 109.46623 * 174.99905 * 5 4 2 8 8 N 1.46500 * 109.46944 * 294.99645 * 5 4 2 9 9 C 1.34781 * 119.99732 * 155.00564 * 8 5 4 10 10 O 1.21283 * 119.99585 * 359.97438 * 9 8 5 11 11 C 1.50697 * 119.99747 * 179.97438 * 9 8 5 12 12 C 1.53010 * 109.46789 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.46774 * 180.02562 * 12 11 9 14 14 C 1.34942 * 126.03514 * 125.00800 * 13 12 11 15 15 C 1.35317 * 107.74655 * 179.97438 * 14 13 12 16 16 C 1.39867 * 107.91963 * 359.97438 * 15 14 13 17 17 N 1.30831 * 108.20316 * 359.74426 * 16 15 14 18 18 N 1.46496 * 109.47320 * 120.00198 * 2 1 3 19 19 C 1.36943 * 119.99983 * 274.99696 * 18 2 1 20 20 H 1.07994 * 119.99758 * 359.97438 * 19 18 2 21 21 C 1.38808 * 119.99750 * 180.02562 * 19 18 2 22 22 N 1.31624 * 120.00638 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99721 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46919 * 89.99978 * 23 21 19 25 25 H 1.48500 * 109.46813 * 209.99542 * 23 21 19 26 26 H 1.48497 * 109.46745 * 329.99897 * 23 21 19 27 27 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46822 * 300.00050 * 1 2 3 29 29 H 1.09001 * 109.46769 * 59.99764 * 1 2 3 30 30 H 1.08997 * 109.46604 * 54.99732 * 4 2 1 31 31 H 1.09001 * 109.46642 * 294.99968 * 4 2 1 32 32 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 33 33 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 34 34 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 35 35 H 0.96998 * 120.00364 * 335.00076 * 8 5 4 36 36 H 1.08998 * 109.47252 * 299.99651 * 11 9 8 37 37 H 1.09004 * 109.47120 * 60.00384 * 11 9 8 38 38 H 1.08998 * 109.47317 * 300.00076 * 12 11 9 39 39 H 1.09004 * 109.46596 * 60.00529 * 12 11 9 40 40 H 1.07996 * 126.12879 * 359.94629 * 14 13 12 41 41 H 1.07999 * 126.04174 * 180.02562 * 15 14 13 42 42 H 1.08000 * 125.90020 * 180.02562 * 16 15 14 43 43 H 0.97000 * 120.00608 * 95.00005 * 18 2 1 44 44 H 0.96995 * 120.00125 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4384 -2.4926 8 7 3.9479 0.7894 -1.4925 9 6 5.1612 1.2135 -1.0868 10 8 5.9356 0.4340 -0.5733 11 6 5.5555 2.6562 -1.2712 12 6 6.9703 2.8715 -0.7297 13 7 7.3534 4.2742 -0.9085 14 6 7.7795 5.1104 0.0610 15 6 8.0310 6.3108 -0.5108 16 6 7.7493 6.2043 -1.8766 17 7 7.3486 4.9823 -2.1172 18 7 2.0183 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8928 1.0405 2.4241 21 6 2.6125 -0.6618 3.5089 22 7 2.9255 -1.9389 3.4498 23 14 2.7903 0.2700 5.1183 24 1 1.5227 0.1777 5.8863 25 1 3.8953 -0.3227 5.9138 26 1 3.0942 1.6954 4.8339 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6053 -0.2617 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 5.1714 -1.3611 -2.5388 33 1 3.8000 -2.4819 -2.3596 34 1 3.6545 -1.0594 -3.4194 35 1 3.3284 1.4128 -1.9029 36 1 5.5298 2.9072 -2.3316 37 1 4.8584 3.2955 -0.7295 38 1 6.9956 2.6206 0.3307 39 1 7.6676 2.2322 -1.2712 40 1 7.8982 4.8657 1.1062 41 1 8.3870 7.1947 -0.0025 42 1 7.8500 6.9931 -2.6074 43 1 2.2491 -1.6318 1.1526 44 1 3.2488 -2.3961 4.2418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133726006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:31 Heat of formation + Delta-G solvation = 40.092395 kcal Electronic energy + Delta-G solvation = -23747.268621 eV Core-core repulsion = 20315.406559 eV Total energy + Delta-G solvation = -3431.862062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21080 -39.64142 -36.95628 -34.59644 -34.18602 -32.19984 -31.12406 -30.29898 -29.30446 -28.59370 -26.33883 -24.74875 -23.61281 -21.47458 -21.16291 -20.60075 -20.07855 -19.71930 -17.69524 -17.20362 -16.40448 -15.94830 -15.84237 -14.93590 -14.56694 -14.42560 -14.08368 -13.94216 -13.73941 -13.28467 -13.19142 -12.95878 -12.80974 -12.61923 -12.34631 -12.14880 -11.96586 -11.74716 -11.60435 -11.46458 -11.04635 -10.84711 -10.73523 -10.62299 -10.43650 -10.23825 -9.90744 -9.68545 -9.62486 -9.49631 -8.88855 -8.73877 -8.69669 -6.92933 -5.73915 -3.02005 1.80719 2.37058 2.75047 2.87954 3.43428 3.45233 3.48252 3.50468 4.42591 4.60829 4.68642 4.77332 4.87647 5.01816 5.14966 5.30370 5.33363 5.41297 5.48356 5.58670 5.60942 5.68468 5.68661 5.74265 5.88422 5.90675 5.93674 6.00962 6.12484 6.28346 6.34698 6.42650 6.54328 6.56145 6.70529 6.79659 6.90127 6.91586 7.06400 7.60351 7.70829 7.74521 8.44384 8.47827 9.55677 10.13328 10.47529 11.48820 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.004263 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.238979 B = 6566.506448 C = 8011.329727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.106 0.894 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.520 3.480 10 O -0.536 6.536 11 C -0.151 4.151 12 C 0.149 3.851 13 N -0.369 5.369 14 C 0.058 3.942 15 C -0.281 4.281 16 C 0.041 3.959 17 N -0.299 5.299 18 N -0.721 5.721 19 C -0.235 4.235 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.284 1.284 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.395 0.605 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.181 0.819 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 11.645 -13.014 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.364 5.364 9 C 0.305 3.695 10 O -0.413 6.413 11 C -0.192 4.192 12 C 0.028 3.972 13 N -0.151 5.151 14 C -0.088 4.088 15 C -0.310 4.310 16 C -0.145 4.145 17 N -0.121 5.121 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.210 1.210 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.228 0.772 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.191 0.809 41 H 0.163 0.837 42 H 0.198 0.802 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.337 10.199 -13.359 17.634 hybrid contribution -0.001 1.107 1.474 1.843 sum 5.336 11.305 -11.885 17.249 Atomic orbital electron populations 1.22459 0.99549 1.00823 0.99759 1.20217 0.91551 0.95483 0.86565 0.93717 1.22171 0.93747 1.02241 0.98812 1.21047 0.95104 0.80058 0.99875 0.87599 1.22182 1.01480 1.00221 0.98026 1.45947 1.16324 1.11772 1.62406 1.20156 0.82208 0.89284 0.77900 1.90745 1.51074 1.56610 1.42896 1.21853 0.97431 0.95309 1.04634 1.21480 0.95725 0.76150 1.03885 1.48836 1.50428 1.10623 1.05253 1.22671 0.99353 0.90955 0.95854 1.21501 1.15750 0.99035 0.94751 1.23861 0.99203 0.94882 0.96562 1.77304 1.24124 1.06005 1.04680 1.42401 1.77987 1.10577 1.05265 1.19149 1.36447 0.93663 0.87389 0.91559 1.24692 1.02198 0.95934 0.97906 1.69645 1.50901 1.08627 1.28759 0.86262 0.77265 0.78774 0.84307 1.21828 1.21797 1.20957 0.93513 0.92930 0.94715 0.92063 0.90612 0.92550 0.91720 0.93159 0.77153 0.87853 0.88405 0.87399 0.88842 0.80860 0.83680 0.80243 0.78337 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 3 H 0.04 0.85 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.95 4.29 -26.73 -0.11 -2.07 16 5 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 6 H 0.11 2.20 7.05 -51.93 -0.37 1.84 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 8 N -0.71 -9.93 4.45 -53.80 -0.24 -10.17 16 9 C 0.52 7.92 7.79 -10.98 -0.09 7.83 16 10 O -0.54 -10.42 15.64 5.56 0.09 -10.33 16 11 C -0.15 -1.79 5.89 -27.88 -0.16 -1.96 16 12 C 0.15 1.79 5.80 -4.04 -0.02 1.77 16 13 N -0.37 -4.49 3.68 -61.36 -0.23 -4.71 16 14 C 0.06 0.62 11.45 -17.23 -0.20 0.42 16 15 C -0.28 -2.78 10.80 -40.01 -0.43 -3.21 16 16 C 0.04 0.43 12.02 -17.37 -0.21 0.22 16 17 N -0.30 -3.84 12.42 30.62 0.38 -3.46 16 18 N -0.72 -17.42 4.49 -53.42 -0.24 -17.66 16 19 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 23 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.39 4.36 8.60 -40.82 -0.35 4.01 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.29 8.03 -51.93 -0.42 0.88 16 39 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 40 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -33.82 371.30 -7.38 -41.20 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.31 Total: 12.70 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.13 Total: -3.25 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.40 Total: -63.45 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.82 -7.38 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133726006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.293 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds