Wall clock time and date at job start Tue Mar 31 2020 03:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47582 * 2 1 4 4 C 1.53009 * 109.47131 * 240.00141 * 2 1 3 5 5 C 1.52999 * 109.46984 * 175.00107 * 4 2 1 6 6 H 1.09000 * 109.47486 * 55.00077 * 5 4 2 7 7 C 1.53006 * 109.46623 * 174.99905 * 5 4 2 8 8 N 1.46500 * 109.46944 * 294.99645 * 5 4 2 9 9 C 1.34781 * 119.99732 * 155.00564 * 8 5 4 10 10 O 1.21283 * 119.99585 * 359.97438 * 9 8 5 11 11 C 1.50697 * 119.99747 * 179.97438 * 9 8 5 12 12 C 1.53010 * 109.46789 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.46774 * 180.02562 * 12 11 9 14 14 C 1.34942 * 126.03514 * 125.00800 * 13 12 11 15 15 C 1.35317 * 107.74655 * 179.97438 * 14 13 12 16 16 C 1.39867 * 107.91963 * 359.97438 * 15 14 13 17 17 N 1.30831 * 108.20316 * 359.74426 * 16 15 14 18 18 N 1.46496 * 109.47320 * 120.00198 * 2 1 3 19 19 C 1.36943 * 119.99983 * 274.99696 * 18 2 1 20 20 H 1.07994 * 119.99758 * 359.97438 * 19 18 2 21 21 C 1.38808 * 119.99750 * 180.02562 * 19 18 2 22 22 N 1.31624 * 120.00638 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99721 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46919 * 89.99978 * 23 21 19 25 25 H 1.48500 * 109.46813 * 209.99542 * 23 21 19 26 26 H 1.48497 * 109.46745 * 329.99897 * 23 21 19 27 27 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46822 * 300.00050 * 1 2 3 29 29 H 1.09001 * 109.46769 * 59.99764 * 1 2 3 30 30 H 1.08997 * 109.46604 * 54.99732 * 4 2 1 31 31 H 1.09001 * 109.46642 * 294.99968 * 4 2 1 32 32 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 33 33 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 34 34 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 35 35 H 0.96998 * 120.00364 * 335.00076 * 8 5 4 36 36 H 1.08998 * 109.47252 * 299.99651 * 11 9 8 37 37 H 1.09004 * 109.47120 * 60.00384 * 11 9 8 38 38 H 1.08998 * 109.47317 * 300.00076 * 12 11 9 39 39 H 1.09004 * 109.46596 * 60.00529 * 12 11 9 40 40 H 1.07996 * 126.12879 * 359.94629 * 14 13 12 41 41 H 1.07999 * 126.04174 * 180.02562 * 15 14 13 42 42 H 1.08000 * 125.90020 * 180.02562 * 16 15 14 43 43 H 0.97000 * 120.00608 * 95.00005 * 18 2 1 44 44 H 0.96995 * 120.00125 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4384 -2.4926 8 7 3.9479 0.7894 -1.4925 9 6 5.1612 1.2135 -1.0868 10 8 5.9356 0.4340 -0.5733 11 6 5.5555 2.6562 -1.2712 12 6 6.9703 2.8715 -0.7297 13 7 7.3534 4.2742 -0.9085 14 6 7.7795 5.1104 0.0610 15 6 8.0310 6.3108 -0.5108 16 6 7.7493 6.2043 -1.8766 17 7 7.3486 4.9823 -2.1172 18 7 2.0183 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8928 1.0405 2.4241 21 6 2.6125 -0.6618 3.5089 22 7 2.9255 -1.9389 3.4498 23 14 2.7903 0.2700 5.1183 24 1 1.5227 0.1777 5.8863 25 1 3.8953 -0.3227 5.9138 26 1 3.0942 1.6954 4.8339 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6053 -0.2617 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 5.1714 -1.3611 -2.5388 33 1 3.8000 -2.4819 -2.3596 34 1 3.6545 -1.0594 -3.4194 35 1 3.3284 1.4128 -1.9029 36 1 5.5298 2.9072 -2.3316 37 1 4.8584 3.2955 -0.7295 38 1 6.9956 2.6206 0.3307 39 1 7.6676 2.2322 -1.2712 40 1 7.8982 4.8657 1.1062 41 1 8.3870 7.1947 -0.0025 42 1 7.8500 6.9931 -2.6074 43 1 2.2491 -1.6318 1.1526 44 1 3.2488 -2.3961 4.2418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133726006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:30 Heat of formation + Delta-G solvation = 17.002878 kcal Electronic energy + Delta-G solvation = -23748.269858 eV Core-core repulsion = 20315.406559 eV Total energy + Delta-G solvation = -3432.863299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03448 -40.88159 -38.39228 -36.10815 -35.23102 -34.01674 -32.36831 -31.21603 -30.48951 -30.13780 -27.60316 -25.80968 -25.55857 -22.62274 -21.98588 -21.71622 -21.17744 -21.15256 -19.28938 -18.60026 -17.44697 -17.23951 -16.89345 -16.62332 -15.78455 -15.67065 -15.41152 -15.26180 -15.08935 -14.51990 -14.36377 -14.21920 -13.93586 -13.61997 -13.56309 -13.38990 -13.27943 -13.10495 -12.90795 -12.79193 -12.67472 -12.42390 -12.22980 -12.19684 -11.82243 -11.57441 -11.55358 -11.42064 -10.94855 -10.88895 -10.39312 -9.98258 -9.51213 -8.94744 -7.91488 -5.17181 0.98764 1.43541 1.45048 1.49538 1.52597 1.67021 1.99087 2.34487 2.56593 3.43026 3.52141 3.68462 3.82124 3.89190 4.01852 4.09279 4.15159 4.20930 4.34982 4.41025 4.51821 4.55937 4.69561 4.69922 4.79234 4.83322 4.84659 4.92106 4.94690 5.03994 5.10202 5.18481 5.23643 5.35195 5.42861 5.52231 5.62475 5.67095 5.79422 6.09170 6.31502 6.60907 6.79223 7.32967 7.37253 8.17400 8.37255 9.32333 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.004263 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.238979 B = 6566.506448 C = 8011.329727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.585 6.585 11 C -0.134 4.134 12 C 0.152 3.848 13 N -0.382 5.382 14 C 0.045 3.955 15 C -0.282 4.282 16 C 0.040 3.960 17 N -0.334 5.334 18 N -0.732 5.732 19 C -0.226 4.226 20 H 0.070 0.930 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.962 3.038 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.271 1.271 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.210 0.790 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 13.998 -14.667 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.067 0.933 7 C -0.209 4.209 8 N -0.355 5.355 9 C 0.301 3.699 10 O -0.466 6.466 11 C -0.174 4.174 12 C 0.030 3.970 13 N -0.164 5.164 14 C -0.101 4.101 15 C -0.311 4.311 16 C -0.146 4.146 17 N -0.155 5.155 18 N -0.372 5.372 19 C -0.359 4.359 20 H 0.088 0.912 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.792 3.208 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.196 1.196 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.211 0.789 41 H 0.187 0.813 42 H 0.226 0.774 43 H 0.201 0.799 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.374 12.621 -15.066 20.135 hybrid contribution 0.271 0.460 1.902 1.975 sum 4.645 13.081 -13.164 19.131 Atomic orbital electron populations 1.22316 0.97873 1.00809 1.00690 1.20513 0.92528 0.95301 0.86033 0.93781 1.22076 0.92879 1.02176 0.98518 1.20827 0.95527 0.81146 0.98357 0.93323 1.22081 1.00414 1.00238 0.98216 1.45856 1.16300 1.11530 1.61818 1.20754 0.81973 0.90306 0.76889 1.90728 1.52552 1.58183 1.45122 1.21723 0.97383 0.92664 1.05645 1.21329 0.95644 0.76575 1.03401 1.48832 1.51391 1.10538 1.05650 1.23189 0.99023 0.91143 0.96702 1.21867 1.15037 0.99550 0.94663 1.24458 0.97791 0.94759 0.97594 1.77261 1.25776 1.07151 1.05349 1.42615 1.78211 1.10109 1.06294 1.19509 1.34048 0.93832 0.88471 0.91168 1.25431 1.03495 0.96809 1.01163 1.69803 1.53068 1.10175 1.29047 0.85305 0.76793 0.78104 0.80631 1.21470 1.22708 1.19616 0.94011 0.95182 0.90551 0.87630 0.90724 0.94282 0.91332 0.90066 0.75068 0.86307 0.87555 0.87934 0.89833 0.78932 0.81328 0.77386 0.79884 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.49 71.98 0.68 -4.36 16 2 C 0.16 5.85 2.84 44.99 0.13 5.98 16 3 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 4 C -0.12 -3.25 4.29 30.60 0.13 -3.12 16 5 C 0.15 4.51 2.52 44.99 0.11 4.62 16 6 H 0.05 2.11 7.05 -2.39 -0.02 2.09 16 7 C -0.15 -3.89 9.48 71.98 0.68 -3.20 16 8 N -0.70 -18.71 4.45 -442.52 -1.97 -20.67 16 9 C 0.51 15.67 7.79 87.66 0.68 16.35 16 10 O -0.59 -23.69 15.64 -3.04 -0.05 -23.74 16 11 C -0.13 -3.05 5.89 29.85 0.18 -2.88 16 12 C 0.15 3.68 5.80 86.38 0.50 4.18 16 13 N -0.38 -8.97 3.68 -348.05 -1.28 -10.25 16 14 C 0.05 0.89 11.45 83.54 0.96 1.85 16 15 C -0.28 -4.97 10.80 21.99 0.24 -4.73 16 16 C 0.04 0.75 12.02 85.24 1.02 1.77 16 17 N -0.33 -8.12 12.42 -57.03 -0.71 -8.83 16 18 N -0.73 -35.77 4.49 -322.94 -1.45 -37.22 16 19 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 23 Si 0.96 47.10 29.55 68.60 2.03 49.13 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 7.96 8.60 -92.71 -0.80 7.16 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.10 2.54 8.03 -2.39 -0.02 2.52 16 39 H 0.08 2.14 8.10 -2.38 -0.02 2.13 16 40 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -76.10 371.30 2.94 -73.16 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.53 Total: 37.96 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.62 Total: 0.79 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -5.12 Total: -137.30 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.10 2.94 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133726006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.164 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds