Wall clock time and date at job start Tue Mar 31 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46566 * 2 1 4 4 C 1.35361 * 126.38501 * 85.00457 * 3 2 1 5 5 C 1.41500 * 105.50230 * 180.02562 * 4 3 2 6 6 C 1.47712 * 126.52216 * 179.97438 * 5 4 3 7 7 O 1.21573 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27851 * 8 6 5 10 10 H 1.08995 * 109.47013 * 324.72129 * 9 8 6 11 11 C 1.52999 * 109.47257 * 84.72116 * 9 8 6 12 12 C 1.53004 * 109.47065 * 204.72115 * 9 8 6 13 13 C 1.53003 * 109.46807 * 64.99542 * 12 9 8 14 14 H 1.09002 * 109.46827 * 55.00311 * 13 12 9 15 15 C 1.53002 * 109.46744 * 174.99976 * 13 12 9 16 16 N 1.46494 * 109.47333 * 295.00361 * 13 12 9 17 17 C 1.36942 * 119.99930 * 155.00440 * 16 13 12 18 18 H 1.07997 * 119.99996 * 359.97438 * 17 16 13 19 19 C 1.38811 * 119.99791 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00348 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47366 * 119.99800 * 21 19 17 24 24 H 1.48505 * 109.47129 * 239.99880 * 21 19 17 25 25 N 1.31808 * 106.96327 * 0.24002 * 5 4 3 26 26 N 1.28465 * 110.07409 * 359.59257 * 25 5 4 27 27 H 0.97007 * 124.89073 * 180.20862 * 26 25 5 28 28 H 1.09004 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47584 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47360 * 60.00295 * 1 2 3 31 31 H 1.08990 * 109.47238 * 240.00347 * 2 1 3 32 32 H 1.09001 * 109.47159 * 119.99441 * 2 1 3 33 33 H 1.08003 * 127.25268 * 0.03493 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47098 * 60.00065 * 11 9 8 36 36 H 1.09003 * 109.47054 * 179.97438 * 11 9 8 37 37 H 1.08996 * 109.47245 * 299.99926 * 11 9 8 38 38 H 1.08993 * 109.47108 * 184.99578 * 12 9 8 39 39 H 1.08998 * 109.47048 * 305.00090 * 12 9 8 40 40 H 1.09002 * 109.47185 * 60.00554 * 15 13 12 41 41 H 1.09004 * 109.46882 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47436 * 300.00549 * 15 13 12 43 43 H 0.96999 * 120.00303 * 334.99345 * 16 13 12 44 44 H 0.97002 * 120.00067 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2103 2.2096 1.0856 5 6 2.6917 3.4417 0.5831 6 6 3.0404 4.6384 1.3757 7 8 2.9217 4.6219 2.5855 8 7 3.4891 5.7489 0.7577 9 6 3.8406 6.9336 1.5444 10 1 3.1642 7.0189 2.3948 11 6 5.2793 6.8027 2.0483 12 6 3.7186 8.1821 0.6685 13 6 2.2559 8.3823 0.2667 14 1 1.6348 8.4169 1.1618 15 6 2.1139 9.6965 -0.5037 16 7 1.8261 7.2690 -0.5830 17 6 0.5004 6.9329 -0.6525 18 1 -0.2282 7.4882 -0.0806 19 6 0.0933 5.8777 -1.4573 20 7 0.9813 5.2006 -2.1540 21 14 -1.7149 5.4186 -1.5516 22 1 -2.5024 6.3269 -0.6795 23 1 -2.1858 5.5469 -2.9540 24 1 -1.8942 4.0168 -1.0955 25 7 2.7644 3.3204 -0.7274 26 7 2.3879 2.1448 -1.0830 27 1 2.3599 1.8242 -1.9982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0244 1.9527 2.1180 34 1 3.5834 5.7621 -0.2076 35 1 5.9558 6.7175 1.1979 36 1 5.5410 7.6845 2.6333 37 1 5.3663 5.9133 2.6723 38 1 4.0646 9.0524 1.2261 39 1 4.3277 8.0586 -0.2270 40 1 2.7350 9.6618 -1.3988 41 1 1.0718 9.8393 -0.7895 42 1 2.4338 10.5248 0.1285 43 1 2.4805 6.7701 -1.0966 44 1 0.6967 4.4635 -2.7167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133741580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:46 Heat of formation + Delta-G solvation = 39.537574 kcal Electronic energy + Delta-G solvation = -25152.773681 eV Core-core repulsion = 21720.887560 eV Total energy + Delta-G solvation = -3431.886121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98086 -38.88577 -36.58173 -34.06767 -33.99008 -32.14008 -31.33836 -30.20072 -28.78586 -28.34335 -26.23892 -23.70877 -23.52972 -23.48222 -20.59851 -20.45479 -20.07612 -19.05452 -17.17369 -16.97635 -16.19890 -15.58837 -15.10171 -14.71271 -14.28594 -14.02001 -13.77337 -13.69243 -13.40960 -13.17459 -12.92046 -12.77173 -12.55262 -12.24331 -12.03798 -11.80940 -11.65382 -11.56903 -11.43257 -11.06373 -10.92409 -10.79316 -10.64438 -10.27747 -10.15384 -9.96750 -9.79148 -9.56526 -9.29765 -8.85604 -8.67996 -8.33891 -8.16421 -6.79015 -5.63605 -2.89534 2.45753 2.66362 3.44499 3.46175 3.51010 3.53443 3.97420 4.34873 4.67015 4.87369 5.00427 5.17884 5.27575 5.34638 5.53002 5.59830 5.63773 5.68713 5.79028 5.79226 5.84192 5.96288 6.02608 6.10608 6.12267 6.19403 6.25565 6.26674 6.34184 6.43492 6.46539 6.52599 6.66649 6.71128 6.95016 7.00652 7.14944 7.33507 7.59897 7.82476 8.33162 8.50850 8.67998 9.09763 9.63588 10.19560 10.55218 11.55197 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.007265 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.802391 B = 3852.948823 C = 5528.691050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.009 4.009 4 C -0.181 4.181 5 C -0.016 4.016 6 C 0.617 3.383 7 O -0.563 6.563 8 N -0.684 5.684 9 C 0.149 3.851 10 H 0.083 0.917 11 C -0.162 4.162 12 C -0.133 4.133 13 C 0.169 3.831 14 H 0.046 0.954 15 C -0.163 4.163 16 N -0.714 5.714 17 C -0.232 4.232 18 H 0.064 0.936 19 C -0.004 4.004 20 N -0.905 5.905 21 Si 0.890 3.110 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.297 1.297 25 N -0.184 5.184 26 N -0.377 5.377 27 H 0.438 0.562 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.411 0.589 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.380 0.620 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -5.654 2.814 9.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.210 4.210 5 C -0.177 4.177 6 C 0.402 3.598 7 O -0.441 6.441 8 N -0.336 5.336 9 C 0.044 3.956 10 H 0.101 0.899 11 C -0.221 4.221 12 C -0.172 4.172 13 C 0.059 3.941 14 H 0.064 0.936 15 C -0.223 4.223 16 N -0.358 5.358 17 C -0.364 4.364 18 H 0.082 0.918 19 C -0.201 4.201 20 N -0.553 5.553 21 Si 0.723 3.277 22 H -0.209 1.209 23 H -0.224 1.224 24 H -0.224 1.224 25 N -0.019 5.019 26 N -0.092 5.092 27 H 0.282 0.718 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.249 0.751 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.215 0.785 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.639 -5.041 2.772 8.785 hybrid contribution -1.394 -0.961 -0.643 1.811 sum 5.245 -6.002 2.129 8.250 Atomic orbital electron populations 1.21784 0.94529 1.01476 1.02969 1.19989 0.96096 0.89453 1.03057 1.21234 1.07591 0.96636 0.87873 1.21319 1.07656 0.92958 0.99034 1.21768 1.09548 0.96208 0.90182 1.16758 0.75718 0.81448 0.85878 1.90683 1.55978 1.83706 1.13779 1.45808 1.64838 1.11624 1.11335 1.20814 0.95197 0.84825 0.94762 0.89914 1.22212 0.96909 1.01910 1.01029 1.22203 0.98976 0.96532 0.99449 1.20267 0.91786 0.88451 0.93585 0.93577 1.22426 1.01553 0.98228 1.00093 1.42429 1.05996 1.34772 1.52570 1.19114 0.84422 1.11350 1.21495 0.91836 1.24557 0.96337 0.98833 1.00377 1.69687 1.30719 1.22795 1.32100 0.86368 0.86684 0.77872 0.76807 1.20909 1.22389 1.22426 1.73883 1.14682 0.99531 1.13789 1.43315 1.48034 1.08570 1.09245 0.71846 0.92325 0.91996 0.92619 0.91229 0.89734 0.83240 0.75074 0.92848 0.92183 0.92372 0.90894 0.91789 0.93679 0.92976 0.94711 0.78501 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.05 -0.53 6.49 -27.88 -0.18 -0.71 16 3 C -0.01 -0.14 6.48 -82.21 -0.53 -0.67 16 4 C -0.18 -3.36 10.73 -39.37 -0.42 -3.79 16 5 C -0.02 -0.33 7.13 -82.77 -0.59 -0.92 16 6 C 0.62 13.56 7.79 -12.39 -0.10 13.46 16 7 O -0.56 -13.35 16.59 5.30 0.09 -13.26 16 8 N -0.68 -13.52 3.80 -54.79 -0.21 -13.73 16 9 C 0.15 2.57 2.57 -67.93 -0.17 2.39 16 10 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 11 C -0.16 -2.33 9.48 37.16 0.35 -1.97 16 12 C -0.13 -2.11 4.43 -26.73 -0.12 -2.23 16 13 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 16 N -0.71 -16.78 3.84 -53.43 -0.21 -16.98 16 17 C -0.23 -6.27 9.93 -15.06 -0.15 -6.41 16 18 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.91 -24.50 12.37 55.49 0.69 -23.81 16 21 Si 0.89 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 25 N -0.18 -3.71 11.23 33.42 0.38 -3.34 16 26 N -0.38 -6.27 6.83 33.50 0.23 -6.04 16 27 H 0.44 5.92 8.96 -190.44 -1.71 4.22 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.15 2.60 8.06 -52.48 -0.42 2.17 16 34 H 0.41 8.43 6.24 -40.82 -0.25 8.17 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.38 9.23 5.71 -40.82 -0.23 9.00 16 44 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -31.20 364.94 -8.52 -39.72 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -8.47 Total: 16.36 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.49 Total: -1.91 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 0.88 Total: -63.90 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.20 -8.52 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133741580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.257 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds