Wall clock time and date at job start Tue Mar 31 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46566 * 2 1 4 4 C 1.35361 * 126.38501 * 85.00457 * 3 2 1 5 5 C 1.41500 * 105.50230 * 180.02562 * 4 3 2 6 6 C 1.47712 * 126.52216 * 179.97438 * 5 4 3 7 7 O 1.21573 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27851 * 8 6 5 10 10 H 1.08995 * 109.47013 * 324.72129 * 9 8 6 11 11 C 1.52999 * 109.47257 * 84.72116 * 9 8 6 12 12 C 1.53004 * 109.47065 * 204.72115 * 9 8 6 13 13 C 1.53003 * 109.46807 * 64.99542 * 12 9 8 14 14 H 1.09002 * 109.46827 * 55.00311 * 13 12 9 15 15 C 1.53002 * 109.46744 * 174.99976 * 13 12 9 16 16 N 1.46494 * 109.47333 * 295.00361 * 13 12 9 17 17 C 1.36942 * 119.99930 * 155.00440 * 16 13 12 18 18 H 1.07997 * 119.99996 * 359.97438 * 17 16 13 19 19 C 1.38811 * 119.99791 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00348 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47366 * 119.99800 * 21 19 17 24 24 H 1.48505 * 109.47129 * 239.99880 * 21 19 17 25 25 N 1.31808 * 106.96327 * 0.24002 * 5 4 3 26 26 N 1.28465 * 110.07409 * 359.59257 * 25 5 4 27 27 H 0.97007 * 124.89073 * 180.20862 * 26 25 5 28 28 H 1.09004 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47584 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47360 * 60.00295 * 1 2 3 31 31 H 1.08990 * 109.47238 * 240.00347 * 2 1 3 32 32 H 1.09001 * 109.47159 * 119.99441 * 2 1 3 33 33 H 1.08003 * 127.25268 * 0.03493 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47098 * 60.00065 * 11 9 8 36 36 H 1.09003 * 109.47054 * 179.97438 * 11 9 8 37 37 H 1.08996 * 109.47245 * 299.99926 * 11 9 8 38 38 H 1.08993 * 109.47108 * 184.99578 * 12 9 8 39 39 H 1.08998 * 109.47048 * 305.00090 * 12 9 8 40 40 H 1.09002 * 109.47185 * 60.00554 * 15 13 12 41 41 H 1.09004 * 109.46882 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47436 * 300.00549 * 15 13 12 43 43 H 0.96999 * 120.00303 * 334.99345 * 16 13 12 44 44 H 0.97002 * 120.00067 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2103 2.2096 1.0856 5 6 2.6917 3.4417 0.5831 6 6 3.0404 4.6384 1.3757 7 8 2.9217 4.6219 2.5855 8 7 3.4891 5.7489 0.7577 9 6 3.8406 6.9336 1.5444 10 1 3.1642 7.0189 2.3948 11 6 5.2793 6.8027 2.0483 12 6 3.7186 8.1821 0.6685 13 6 2.2559 8.3823 0.2667 14 1 1.6348 8.4169 1.1618 15 6 2.1139 9.6965 -0.5037 16 7 1.8261 7.2690 -0.5830 17 6 0.5004 6.9329 -0.6525 18 1 -0.2282 7.4882 -0.0806 19 6 0.0933 5.8777 -1.4573 20 7 0.9813 5.2006 -2.1540 21 14 -1.7149 5.4186 -1.5516 22 1 -2.5024 6.3269 -0.6795 23 1 -2.1858 5.5469 -2.9540 24 1 -1.8942 4.0168 -1.0955 25 7 2.7644 3.3204 -0.7274 26 7 2.3879 2.1448 -1.0830 27 1 2.3599 1.8242 -1.9982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0244 1.9527 2.1180 34 1 3.5834 5.7621 -0.2076 35 1 5.9558 6.7175 1.1979 36 1 5.5410 7.6845 2.6333 37 1 5.3663 5.9133 2.6723 38 1 4.0646 9.0524 1.2261 39 1 4.3277 8.0586 -0.2270 40 1 2.7350 9.6618 -1.3988 41 1 1.0718 9.8393 -0.7895 42 1 2.4338 10.5248 0.1285 43 1 2.4805 6.7701 -1.0966 44 1 0.6967 4.4635 -2.7167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133741580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:45 Heat of formation + Delta-G solvation = 19.134078 kcal Electronic energy + Delta-G solvation = -25153.658443 eV Core-core repulsion = 21720.887560 eV Total energy + Delta-G solvation = -3432.770883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.38542 -40.47414 -38.20574 -35.71715 -35.12060 -33.94856 -32.85438 -31.70632 -30.25788 -29.89455 -27.57318 -25.50478 -25.19906 -24.55566 -22.01785 -21.82787 -21.62017 -20.62800 -19.04572 -18.41202 -17.69253 -17.11482 -16.58500 -16.53052 -15.63335 -15.49635 -15.37496 -15.23214 -14.90670 -14.61239 -14.27063 -14.17553 -14.08402 -13.56534 -13.29832 -13.25599 -13.17349 -12.90702 -12.78657 -12.60244 -12.45821 -12.27129 -12.11877 -12.01770 -11.70306 -11.55585 -11.38709 -11.37205 -10.96085 -10.83021 -10.19292 -9.74051 -9.69056 -8.72201 -7.73049 -4.96125 0.91594 1.30151 1.38979 1.42675 1.47781 2.15263 2.50740 2.61141 2.75760 3.56188 3.67170 3.82118 3.87341 4.06232 4.13474 4.21240 4.40740 4.41770 4.50828 4.59672 4.69384 4.72054 4.78734 4.85922 4.86771 4.89715 4.95223 5.01666 5.10743 5.16683 5.18336 5.24785 5.33556 5.39352 5.44877 5.56323 5.64644 5.66762 5.82136 6.34423 6.44050 6.74662 7.20126 7.47035 7.53500 8.27069 8.53979 9.44013 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.007265 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.802391 B = 3852.948823 C = 5528.691050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C 0.015 3.985 4 C -0.212 4.212 5 C -0.046 4.046 6 C 0.605 3.395 7 O -0.594 6.594 8 N -0.678 5.678 9 C 0.143 3.857 10 H 0.058 0.942 11 C -0.151 4.151 12 C -0.119 4.119 13 C 0.161 3.839 14 H 0.026 0.974 15 C -0.152 4.152 16 N -0.718 5.718 17 C -0.238 4.238 18 H 0.049 0.951 19 C -0.042 4.042 20 N -0.907 5.907 21 Si 0.932 3.068 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.305 1.305 25 N -0.208 5.208 26 N -0.369 5.369 27 H 0.451 0.549 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.375 0.625 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -5.957 2.370 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.110 4.110 4 C -0.240 4.240 5 C -0.207 4.207 6 C 0.391 3.609 7 O -0.475 6.475 8 N -0.328 5.328 9 C 0.038 3.962 10 H 0.076 0.924 11 C -0.209 4.209 12 C -0.157 4.157 13 C 0.052 3.948 14 H 0.044 0.956 15 C -0.212 4.212 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.067 0.933 19 C -0.238 4.238 20 N -0.556 5.556 21 Si 0.765 3.235 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.234 1.234 25 N -0.044 5.044 26 N -0.085 5.085 27 H 0.297 0.703 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.170 0.830 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.210 0.790 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.652 -5.300 2.314 9.592 hybrid contribution -1.730 -0.869 -0.498 1.999 sum 5.923 -6.169 1.816 8.743 Atomic orbital electron populations 1.21777 0.94733 1.02983 1.01151 1.20203 0.95639 0.86656 1.05694 1.21830 1.04748 0.97998 0.86416 1.21545 1.09288 0.92967 1.00205 1.21895 1.11077 0.96872 0.90832 1.17082 0.75706 0.82355 0.85782 1.90638 1.57567 1.84388 1.14861 1.45883 1.63930 1.11847 1.11162 1.21024 0.96530 0.84582 0.94029 0.92423 1.22105 0.94806 1.02483 1.01505 1.22124 0.96371 0.97173 1.00018 1.20490 0.93820 0.88072 0.92383 0.95550 1.22261 1.00206 0.98194 1.00516 1.42459 1.04595 1.35923 1.53133 1.19171 0.85832 1.11147 1.20950 0.93334 1.24969 0.98370 0.99402 1.01072 1.69757 1.30952 1.22702 1.32176 0.85715 0.84536 0.76836 0.76420 1.21243 1.22312 1.23354 1.73790 1.15879 1.01222 1.13479 1.43413 1.47003 1.07836 1.10294 0.70271 0.89179 0.93875 0.94371 0.88088 0.87580 0.82969 0.75497 0.91493 0.89176 0.94212 0.87049 0.90754 0.93398 0.95380 0.91192 0.79019 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.89 71.98 0.71 -2.47 16 2 C -0.04 -0.85 6.49 29.85 0.19 -0.66 16 3 C 0.02 0.47 6.48 41.40 0.27 0.74 16 4 C -0.21 -7.98 10.73 22.41 0.24 -7.74 16 5 C -0.05 -2.01 7.13 42.46 0.30 -1.71 16 6 C 0.60 27.54 7.79 86.75 0.68 28.21 16 7 O -0.59 -29.33 16.59 -3.95 -0.07 -29.40 16 8 N -0.68 -27.24 3.80 -445.53 -1.69 -28.94 16 9 C 0.14 4.83 2.57 44.99 0.12 4.94 16 10 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 11 C -0.15 -4.07 9.48 71.98 0.68 -3.38 16 12 C -0.12 -3.51 4.43 30.60 0.14 -3.37 16 13 C 0.16 6.14 2.89 44.99 0.13 6.27 16 14 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 15 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 16 N -0.72 -33.95 3.84 -322.94 -1.24 -35.19 16 17 C -0.24 -13.08 9.93 84.03 0.83 -12.24 16 18 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 19 C -0.04 -2.33 5.50 84.86 0.47 -1.87 16 20 N -0.91 -49.39 12.37 21.65 0.27 -49.12 16 21 Si 0.93 46.84 29.55 68.60 2.03 48.86 16 22 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 24 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 25 N -0.21 -8.50 11.23 -48.18 -0.54 -9.04 16 26 N -0.37 -12.06 6.83 -47.92 -0.33 -12.38 16 27 H 0.45 11.68 8.96 -219.99 -1.97 9.70 16 28 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.15 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.41 16.93 6.24 -92.71 -0.58 16.36 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.38 18.33 5.71 -92.71 -0.53 17.80 16 44 H 0.24 13.02 8.31 -92.71 -0.77 12.25 16 Total: -1.00 -69.71 364.94 1.80 -67.91 By element: Atomic # 1 Polarization: 47.10 SS G_CDS: -2.07 Total: 45.03 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.44 Total: 2.26 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -3.53 Total: -134.67 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.07 Total: -29.40 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -69.71 1.80 -67.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133741580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.043 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds