Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39869 * 126.04085 * 2 1 4 4 N 1.30843 * 108.20405 * 179.74050 * 3 2 1 5 5 N 1.40082 * 108.20009 * 0.40986 * 4 3 2 6 6 C 1.46509 * 126.03424 * 179.85186 * 5 4 3 7 7 C 1.50701 * 109.47017 * 304.68850 * 6 5 4 8 8 O 1.21283 * 120.00052 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 C 1.53001 * 109.47049 * 64.99864 * 13 10 9 15 15 H 1.09002 * 109.46829 * 305.00193 * 14 13 10 16 16 C 1.53001 * 109.47035 * 185.00124 * 14 13 10 17 17 N 1.46501 * 109.47107 * 65.00275 * 14 13 10 18 18 C 1.36935 * 119.99647 * 205.00319 * 17 14 13 19 19 H 1.08001 * 120.00212 * 359.97438 * 18 17 14 20 20 C 1.38816 * 119.99839 * 180.02562 * 18 17 14 21 21 N 1.31623 * 119.99958 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46666 * 89.99847 * 22 20 18 24 24 H 1.48496 * 109.47256 * 209.99621 * 22 20 18 25 25 H 1.48496 * 109.47455 * 330.00276 * 22 20 18 26 26 C 1.34946 * 107.93089 * 359.58953 * 5 4 3 27 27 H 1.08997 * 109.47108 * 269.99294 * 1 2 3 28 28 H 1.08998 * 109.47004 * 29.99706 * 1 2 3 29 29 H 1.08997 * 109.46763 * 149.99483 * 1 2 3 30 30 H 1.08006 * 125.89575 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.46907 * 184.68900 * 6 5 4 32 32 H 1.09000 * 109.46663 * 64.68688 * 6 5 4 33 33 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 37 37 H 1.08998 * 109.47192 * 185.00019 * 13 10 9 38 38 H 1.08998 * 109.46934 * 304.99865 * 13 10 9 39 39 H 1.08997 * 109.46835 * 300.00228 * 16 14 13 40 40 H 1.09001 * 109.47061 * 60.00142 * 16 14 13 41 41 H 1.09000 * 109.46883 * 179.97438 * 16 14 13 42 42 H 0.97001 * 119.99978 * 24.99531 * 17 14 13 43 43 H 0.96999 * 120.00193 * 180.02562 * 21 20 18 44 44 H 1.07994 * 126.13124 * 180.22496 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5755 0.7302 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7746 -1.5249 0.0002 7 6 5.6580 -1.1561 -1.1637 8 8 5.3263 -0.2668 -1.9188 9 7 6.8171 -1.8136 -1.3648 10 6 7.6762 -1.4548 -2.4959 11 1 7.0569 -1.1648 -3.3447 12 6 8.5787 -0.2846 -2.0997 13 6 8.5399 -2.6571 -2.8819 14 6 7.6433 -3.7850 -3.3966 15 1 6.8853 -4.0167 -2.6483 16 6 8.4923 -5.0293 -3.6648 17 7 6.9907 -3.3622 -4.6381 18 6 5.8031 -3.9302 -5.0152 19 1 5.3479 -4.6902 -4.3975 20 6 5.1849 -3.5299 -6.1919 21 7 5.7400 -2.6040 -6.9449 22 14 3.5653 -4.3053 -6.7066 23 1 2.4389 -3.5209 -6.1399 24 1 3.4682 -4.3113 -8.1884 25 1 3.5012 -5.6999 -6.2007 26 6 2.3031 -1.0942 -0.0002 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.9950 2.1578 0.0004 31 1 4.4728 -2.5684 -0.0891 32 1 5.3229 -1.3836 0.9316 33 1 7.0826 -2.5246 -0.7606 34 1 9.1980 -0.5745 -1.2508 35 1 9.2176 -0.0173 -2.9414 36 1 7.9633 0.5720 -1.8247 37 1 9.2410 -2.3648 -3.6637 38 1 9.0931 -3.0025 -2.0085 39 1 9.2502 -4.7975 -4.4131 40 1 8.9778 -5.3440 -2.7411 41 1 7.8534 -5.8330 -4.0310 42 1 7.3997 -2.6797 -5.1930 43 1 5.3079 -2.3240 -7.7669 44 1 1.9724 -2.1222 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133843544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = 19.392244 kcal Electronic energy + Delta-G solvation = -24083.150183 eV Core-core repulsion = 20650.390495 eV Total energy + Delta-G solvation = -3432.759688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16460 -40.69373 -38.32324 -36.06804 -34.65044 -34.00612 -32.57573 -32.04629 -30.44560 -29.20636 -27.60078 -26.46406 -25.66830 -23.29476 -22.04997 -21.45173 -21.18476 -21.08323 -19.29862 -18.25264 -17.98299 -16.99342 -16.64656 -16.36383 -15.78400 -15.62369 -15.51415 -15.12648 -14.64623 -14.49333 -14.39907 -14.13083 -13.91712 -13.64538 -13.50540 -13.37782 -13.23337 -12.99496 -12.95841 -12.81557 -12.69623 -12.65410 -12.25468 -12.19213 -11.83441 -11.56643 -11.43809 -11.41909 -11.07424 -10.92433 -10.28163 -9.99824 -9.20516 -8.95859 -7.93167 -5.18507 0.94370 1.40613 1.43402 1.50424 1.55026 1.65885 1.92242 2.27163 2.55025 3.41923 3.61443 3.76392 3.85680 4.00019 4.04010 4.12632 4.13904 4.21762 4.39775 4.49473 4.54249 4.61697 4.68211 4.78893 4.82032 4.92351 4.95174 5.02588 5.03555 5.11051 5.21901 5.25220 5.32397 5.34049 5.42474 5.50783 5.63520 5.66109 5.77507 6.11849 6.29908 6.63837 6.79245 7.35319 7.36412 8.16750 8.35227 9.30951 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011066 B = 0.005149 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.625298 B = 5436.358071 C = 7154.689196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.256 4.256 3 C 0.027 3.973 4 N -0.317 5.317 5 N -0.370 5.370 6 C 0.117 3.883 7 C 0.490 3.510 8 O -0.572 6.572 9 N -0.700 5.700 10 C 0.150 3.850 11 H 0.040 0.960 12 C -0.150 4.150 13 C -0.117 4.117 14 C 0.164 3.836 15 H 0.049 0.951 16 C -0.157 4.157 17 N -0.734 5.734 18 C -0.223 4.223 19 H 0.074 0.926 20 C -0.082 4.082 21 N -0.972 5.972 22 Si 0.961 3.039 23 H -0.297 1.297 24 H -0.298 1.298 25 H -0.263 1.263 26 C 0.047 3.953 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.196 0.804 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.368 0.632 43 H 0.246 0.754 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -1.193 21.013 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.159 4.159 4 N -0.138 5.138 5 N -0.153 5.153 6 C -0.007 4.007 7 C 0.275 3.725 8 O -0.449 6.449 9 N -0.353 5.353 10 C 0.045 3.955 11 H 0.058 0.942 12 C -0.209 4.209 13 C -0.155 4.155 14 C 0.056 3.944 15 H 0.067 0.933 16 C -0.216 4.216 17 N -0.374 5.374 18 C -0.355 4.355 19 H 0.092 0.908 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.791 3.209 23 H -0.225 1.225 24 H -0.225 1.225 25 H -0.187 1.187 26 C -0.098 4.098 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.213 0.787 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.199 0.801 43 H 0.055 0.945 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.548 -0.437 20.500 20.512 hybrid contribution -1.442 -0.283 -1.172 1.879 sum -0.894 -0.720 19.328 19.362 Atomic orbital electron populations 1.20063 0.87332 1.02633 1.02349 1.20557 0.98573 0.91510 1.16085 1.24260 0.89999 1.01190 1.00447 1.77351 1.22371 0.90109 1.23934 1.48154 1.05677 1.04321 1.57157 1.21806 0.84609 0.95659 0.98654 1.21208 0.82477 0.82141 0.86677 1.90797 1.73439 1.32621 1.48060 1.45719 1.20571 1.38610 1.30425 1.20755 0.91171 0.95395 0.88181 0.94155 1.22069 0.99098 0.97012 1.02683 1.22073 0.97268 0.93719 1.02431 1.20544 0.93257 0.92952 0.87622 0.93264 1.22312 0.99458 0.98585 1.01273 1.42658 1.23767 1.46764 1.24201 1.19534 0.98069 1.14985 1.02919 0.90781 1.25470 1.02392 1.00730 0.98749 1.69810 1.41460 1.35316 1.15743 0.85310 0.80347 0.78528 0.76722 1.22518 1.22473 1.18743 1.22958 0.83316 1.01709 1.01818 0.90717 0.91685 0.91591 0.78683 0.82152 0.83702 0.74550 0.89590 0.91553 0.95045 0.91011 0.87095 0.94252 0.90240 0.95122 0.80092 0.94532 0.77779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.37 71.24 0.74 -0.43 16 2 C -0.26 -6.42 6.10 -20.14 -0.12 -6.54 16 3 C 0.03 0.79 11.96 85.24 1.02 1.81 16 4 N -0.32 -10.91 11.66 -57.02 -0.66 -11.57 16 5 N -0.37 -10.57 3.39 -351.79 -1.19 -11.77 16 6 C 0.12 2.48 6.99 85.63 0.60 3.08 16 7 C 0.49 15.62 7.82 87.66 0.69 16.31 16 8 O -0.57 -26.31 15.38 -3.04 -0.05 -26.36 16 9 N -0.70 -18.01 4.45 -442.53 -1.97 -19.98 16 10 C 0.15 4.72 2.52 44.99 0.11 4.83 16 11 H 0.04 1.83 7.06 -2.39 -0.02 1.81 16 12 C -0.15 -4.07 9.48 71.98 0.68 -3.39 16 13 C -0.12 -3.15 4.29 30.59 0.13 -3.02 16 14 C 0.16 5.70 2.84 44.99 0.13 5.83 16 15 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 16 C -0.16 -4.86 9.49 71.98 0.68 -4.17 16 17 N -0.73 -36.06 4.49 -322.93 -1.45 -37.51 16 18 C -0.22 -12.35 9.93 84.03 0.83 -11.51 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 21 N -0.97 -62.14 13.06 21.65 0.28 -61.86 16 22 Si 0.96 47.89 29.55 68.60 2.03 49.92 16 23 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 24 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.05 1.14 11.36 83.54 0.95 2.09 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.20 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.16 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.42 6.66 8.60 -92.70 -0.80 5.86 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.37 20.11 7.80 -92.71 -0.72 19.38 16 43 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -87.23 371.00 3.37 -83.86 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.53 Total: 34.74 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.91 Total: 0.51 kcal Atomic # 7 Polarization: -137.68 SS G_CDS: -4.99 Total: -142.68 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -87.23 3.37 -83.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133843544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.256 kcal (2) G-P(sol) polarization free energy of solvation -87.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds