Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39671 * 126.06448 * 2 1 4 4 C 1.38408 * 105.35619 * 180.10518 * 3 2 1 5 5 C 1.47157 * 126.88573 * 179.91507 * 4 3 2 6 6 O 1.21632 * 120.00275 * 184.79908 * 5 4 3 7 7 N 1.34779 * 119.99914 * 4.52383 * 5 4 3 8 8 C 1.46501 * 120.00029 * 174.67434 * 7 5 4 9 9 H 1.09004 * 109.47315 * 35.00030 * 8 7 5 10 10 C 1.53004 * 109.46900 * 275.00159 * 8 7 5 11 11 C 1.53003 * 109.47293 * 154.99683 * 8 7 5 12 12 C 1.52998 * 109.47407 * 295.00292 * 11 8 7 13 13 H 1.09001 * 109.47061 * 54.99197 * 12 11 8 14 14 C 1.52994 * 109.47244 * 174.99642 * 12 11 8 15 15 N 1.46503 * 109.46767 * 294.99987 * 12 11 8 16 16 C 1.36930 * 120.00046 * 155.00154 * 15 12 11 17 17 H 1.08004 * 120.00259 * 359.97438 * 16 15 12 18 18 C 1.38817 * 120.00165 * 179.97438 * 16 15 12 19 19 N 1.31616 * 120.00007 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99883 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47003 * 89.99993 * 20 18 16 22 22 H 1.48495 * 109.46954 * 209.99941 * 20 18 16 23 23 H 1.48500 * 109.47185 * 330.00075 * 20 18 16 24 24 N 1.36599 * 106.22934 * 359.65049 * 4 3 2 25 25 C 1.46508 * 125.18846 * 180.20901 * 24 4 3 26 26 N 1.28447 * 109.62280 * 0.22449 * 24 4 3 27 27 H 1.08999 * 109.47287 * 270.26623 * 1 2 3 28 28 H 1.08995 * 109.47053 * 30.27404 * 1 2 3 29 29 H 1.09001 * 109.46798 * 150.27171 * 1 2 3 30 30 H 1.07999 * 127.32679 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00111 * 354.66776 * 7 5 4 32 32 H 1.09000 * 109.46644 * 299.99415 * 10 8 7 33 33 H 1.08990 * 109.47516 * 59.99823 * 10 8 7 34 34 H 1.09003 * 109.46617 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.46387 * 54.99817 * 11 8 7 36 36 H 1.08998 * 109.47292 * 174.99348 * 11 8 7 37 37 H 1.09005 * 109.47047 * 60.00076 * 14 12 11 38 38 H 1.08999 * 109.46988 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47319 * 299.99533 * 14 12 11 40 40 H 0.97001 * 120.00110 * 334.99831 * 15 12 11 41 41 H 0.97004 * 119.99929 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47157 * 90.48369 * 25 24 4 43 43 H 1.08995 * 109.47070 * 210.48260 * 25 24 4 44 44 H 1.08998 * 109.46578 * 330.48449 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 -0.0025 5 6 4.8663 1.4282 -0.0052 6 8 5.9422 0.8680 -0.0953 7 7 4.8119 2.7718 0.0866 8 6 6.0485 3.5489 0.2015 9 1 6.8334 3.0717 -0.3854 10 6 6.4763 3.6125 1.6691 11 6 5.8105 4.9666 -0.3224 12 6 5.5044 4.9121 -1.8205 13 1 4.6664 4.2375 -1.9958 14 6 5.1443 6.3131 -2.3187 15 7 6.6826 4.4249 -2.5422 16 6 6.5359 3.8120 -3.7578 17 1 5.5515 3.6874 -4.1845 18 6 7.6523 3.3509 -4.4419 19 7 7.5111 2.7613 -5.6102 20 14 9.3548 3.5670 -3.7043 21 1 9.6861 2.3847 -2.8689 22 1 10.3538 3.6979 -4.7952 23 1 9.3780 4.7901 -2.8625 24 7 3.5173 -0.7222 0.0042 25 6 4.6451 -1.6574 0.0088 26 7 2.2774 -1.0578 0.0056 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 2.0206 2.1640 0.0004 31 1 3.9540 3.2242 0.0765 32 1 5.6914 4.0898 2.2559 33 1 6.6458 2.6027 2.0423 34 1 7.3961 4.1911 1.7546 35 1 4.9667 5.4118 0.2048 36 1 6.7026 5.5702 -0.1555 37 1 5.9824 6.9877 -2.1435 38 1 4.9266 6.2743 -3.3861 39 1 4.2677 6.6755 -1.7818 40 1 7.5666 4.5365 -2.1589 41 1 8.2913 2.4394 -6.0884 42 1 4.9192 -1.8909 1.0376 43 1 4.3594 -2.5735 -0.5080 44 1 5.4955 -1.2033 -0.4997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133879726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = 44.376247 kcal Electronic energy + Delta-G solvation = -24425.165163 eV Core-core repulsion = 20993.488863 eV Total energy + Delta-G solvation = -3431.676301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50849 -39.45431 -36.99799 -34.76264 -33.93536 -32.33602 -31.57819 -29.97427 -29.69665 -29.19928 -26.46140 -25.53950 -23.72594 -23.20875 -21.53576 -20.57835 -19.85978 -19.50163 -17.83836 -17.42176 -16.32050 -16.27071 -15.64260 -14.85212 -14.66973 -14.28545 -14.06594 -13.72442 -13.58217 -13.53537 -13.23162 -13.10337 -12.68787 -12.51886 -12.43775 -12.32044 -12.30723 -12.11945 -12.00024 -11.73836 -11.27384 -10.91422 -10.69157 -10.66791 -10.53595 -10.29751 -9.96885 -9.84038 -9.54179 -9.14258 -8.89412 -8.86847 -8.80490 -7.22634 -5.72083 -3.07053 1.34199 2.41592 2.54075 3.31604 3.39069 3.40562 3.44450 3.49385 4.44610 4.61463 4.63976 4.92851 5.01924 5.15420 5.20510 5.21128 5.26535 5.34533 5.48789 5.53043 5.56205 5.57540 5.59979 5.73422 5.75043 5.76847 5.84169 5.92851 5.98325 6.16652 6.19343 6.30170 6.41312 6.48049 6.48949 6.66913 6.75193 6.80433 6.98587 7.58424 8.03127 8.07901 8.32064 8.46593 9.25184 9.97964 10.16900 11.46574 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.004782 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.944794 B = 5853.368209 C = 6281.612488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 C -0.190 4.190 4 C -0.026 4.026 5 C 0.592 3.408 6 O -0.533 6.533 7 N -0.699 5.699 8 C 0.144 3.856 9 H 0.103 0.897 10 C -0.162 4.162 11 C -0.135 4.135 12 C 0.176 3.824 13 H 0.055 0.945 14 C -0.166 4.166 15 N -0.745 5.745 16 C -0.238 4.238 17 H 0.087 0.913 18 C 0.005 3.995 19 N -0.935 5.935 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.277 1.277 24 N -0.257 5.257 25 C 0.083 3.917 26 N -0.282 5.282 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.399 0.601 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.359 0.641 41 H 0.258 0.742 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -0.793 16.697 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.137 4.137 3 C -0.219 4.219 4 C -0.155 4.155 5 C 0.377 3.623 6 O -0.410 6.410 7 N -0.350 5.350 8 C 0.040 3.960 9 H 0.121 0.879 10 C -0.221 4.221 11 C -0.173 4.173 12 C 0.066 3.934 13 H 0.073 0.927 14 C -0.226 4.226 15 N -0.388 5.388 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.190 4.190 19 N -0.583 5.583 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.204 1.204 24 N -0.043 5.043 25 C -0.057 4.057 26 N -0.116 5.116 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.234 0.766 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.192 0.808 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.973 -2.575 16.439 19.400 hybrid contribution 0.982 1.185 0.275 1.563 sum -8.991 -1.391 16.714 19.030 Atomic orbital electron populations 1.20063 0.86541 1.03213 1.02494 1.21963 0.97031 0.88873 1.05796 1.22062 0.90312 1.00179 1.09381 1.21484 0.95878 0.85330 1.12772 1.16831 0.86408 0.82480 0.76553 1.90792 1.29874 1.70715 1.49643 1.45599 1.10297 1.05171 1.73974 1.21076 0.87112 0.91914 0.95925 0.87909 1.22207 1.01374 1.02119 0.96361 1.22227 1.02418 0.94860 0.97840 1.20205 0.91176 0.93546 0.88443 0.92702 1.22420 0.99367 0.98952 1.01822 1.42768 1.02929 1.71186 1.21943 1.19005 0.95087 1.29076 0.93575 0.89472 1.24635 0.97230 1.00548 0.96590 1.69700 1.29023 1.44974 1.14639 0.86598 0.86012 0.77880 0.78351 1.20977 1.21899 1.20374 1.45510 1.05042 1.04425 1.49350 1.22405 0.86155 0.92722 1.04433 1.73100 0.89560 1.27951 1.21025 0.91050 0.90513 0.91109 0.82333 0.76630 0.92696 0.92511 0.91579 0.91364 0.90519 0.93641 0.92407 0.94316 0.80780 0.93187 0.90030 0.88948 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.45 36.01 0.38 -0.19 16 2 C 0.02 0.25 7.22 -82.47 -0.60 -0.34 16 3 C -0.19 -2.42 10.44 -38.98 -0.41 -2.83 16 4 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 5 C 0.59 9.81 7.76 -12.64 -0.10 9.71 16 6 O -0.53 -10.53 14.29 5.25 0.08 -10.46 16 7 N -0.70 -9.77 4.44 -54.96 -0.24 -10.02 16 8 C 0.14 2.10 2.57 -67.93 -0.17 1.93 16 9 H 0.10 1.95 6.98 -51.93 -0.36 1.59 16 10 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 11 C -0.13 -1.83 4.29 -26.73 -0.11 -1.94 16 12 C 0.18 3.12 2.84 -67.93 -0.19 2.93 16 13 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 14 C -0.17 -2.72 9.49 37.15 0.35 -2.36 16 15 N -0.75 -17.08 4.30 -53.43 -0.23 -17.31 16 16 C -0.24 -6.68 10.41 -15.06 -0.16 -6.84 16 17 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 19 N -0.94 -29.91 13.97 55.49 0.78 -29.14 16 20 Si 0.88 22.57 27.73 -169.99 -4.71 17.85 16 21 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 N -0.26 -3.86 3.75 -63.88 -0.24 -4.10 16 25 C 0.08 1.04 10.89 59.85 0.65 1.69 16 26 N -0.28 -4.19 11.90 33.64 0.40 -3.79 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.16 1.49 7.58 -52.49 -0.40 1.10 16 31 H 0.40 4.43 7.63 -40.82 -0.31 4.12 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.36 8.21 5.66 -40.82 -0.23 7.97 16 41 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.12 1.68 6.19 -51.93 -0.32 1.35 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -35.44 363.22 -6.48 -41.92 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -7.10 Total: 10.30 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.67 Total: -0.74 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: 0.46 Total: -64.35 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.44 -6.48 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133879726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.297 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds