Wall clock time and date at job start Tue Mar 31 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39671 * 126.06448 * 2 1 4 4 C 1.38408 * 105.35619 * 180.10518 * 3 2 1 5 5 C 1.47157 * 126.88573 * 179.91507 * 4 3 2 6 6 O 1.21632 * 120.00275 * 184.79908 * 5 4 3 7 7 N 1.34779 * 119.99914 * 4.52383 * 5 4 3 8 8 C 1.46501 * 120.00029 * 174.67434 * 7 5 4 9 9 H 1.09004 * 109.47315 * 35.00030 * 8 7 5 10 10 C 1.53004 * 109.46900 * 275.00159 * 8 7 5 11 11 C 1.53003 * 109.47293 * 154.99683 * 8 7 5 12 12 C 1.52998 * 109.47407 * 295.00292 * 11 8 7 13 13 H 1.09001 * 109.47061 * 54.99197 * 12 11 8 14 14 C 1.52994 * 109.47244 * 174.99642 * 12 11 8 15 15 N 1.46503 * 109.46767 * 294.99987 * 12 11 8 16 16 C 1.36930 * 120.00046 * 155.00154 * 15 12 11 17 17 H 1.08004 * 120.00259 * 359.97438 * 16 15 12 18 18 C 1.38817 * 120.00165 * 179.97438 * 16 15 12 19 19 N 1.31616 * 120.00007 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99883 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47003 * 89.99993 * 20 18 16 22 22 H 1.48495 * 109.46954 * 209.99941 * 20 18 16 23 23 H 1.48500 * 109.47185 * 330.00075 * 20 18 16 24 24 N 1.36599 * 106.22934 * 359.65049 * 4 3 2 25 25 C 1.46508 * 125.18846 * 180.20901 * 24 4 3 26 26 N 1.28447 * 109.62280 * 0.22449 * 24 4 3 27 27 H 1.08999 * 109.47287 * 270.26623 * 1 2 3 28 28 H 1.08995 * 109.47053 * 30.27404 * 1 2 3 29 29 H 1.09001 * 109.46798 * 150.27171 * 1 2 3 30 30 H 1.07999 * 127.32679 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00111 * 354.66776 * 7 5 4 32 32 H 1.09000 * 109.46644 * 299.99415 * 10 8 7 33 33 H 1.08990 * 109.47516 * 59.99823 * 10 8 7 34 34 H 1.09003 * 109.46617 * 180.02562 * 10 8 7 35 35 H 1.09003 * 109.46387 * 54.99817 * 11 8 7 36 36 H 1.08998 * 109.47292 * 174.99348 * 11 8 7 37 37 H 1.09005 * 109.47047 * 60.00076 * 14 12 11 38 38 H 1.08999 * 109.46988 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47319 * 299.99533 * 14 12 11 40 40 H 0.97001 * 120.00110 * 334.99831 * 15 12 11 41 41 H 0.97004 * 119.99929 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47157 * 90.48369 * 25 24 4 43 43 H 1.08995 * 109.47070 * 210.48260 * 25 24 4 44 44 H 1.08998 * 109.46578 * 330.48449 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 -0.0025 5 6 4.8663 1.4282 -0.0052 6 8 5.9422 0.8680 -0.0953 7 7 4.8119 2.7718 0.0866 8 6 6.0485 3.5489 0.2015 9 1 6.8334 3.0717 -0.3854 10 6 6.4763 3.6125 1.6691 11 6 5.8105 4.9666 -0.3224 12 6 5.5044 4.9121 -1.8205 13 1 4.6664 4.2375 -1.9958 14 6 5.1443 6.3131 -2.3187 15 7 6.6826 4.4249 -2.5422 16 6 6.5359 3.8120 -3.7578 17 1 5.5515 3.6874 -4.1845 18 6 7.6523 3.3509 -4.4419 19 7 7.5111 2.7613 -5.6102 20 14 9.3548 3.5670 -3.7043 21 1 9.6861 2.3847 -2.8689 22 1 10.3538 3.6979 -4.7952 23 1 9.3780 4.7901 -2.8625 24 7 3.5173 -0.7222 0.0042 25 6 4.6451 -1.6574 0.0088 26 7 2.2774 -1.0578 0.0056 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 2.0206 2.1640 0.0004 31 1 3.9540 3.2242 0.0765 32 1 5.6914 4.0898 2.2559 33 1 6.6458 2.6027 2.0423 34 1 7.3961 4.1911 1.7546 35 1 4.9667 5.4118 0.2048 36 1 6.7026 5.5702 -0.1555 37 1 5.9824 6.9877 -2.1435 38 1 4.9266 6.2743 -3.3861 39 1 4.2677 6.6755 -1.7818 40 1 7.5666 4.5365 -2.1589 41 1 8.2913 2.4394 -6.0884 42 1 4.9192 -1.8909 1.0376 43 1 4.3594 -2.5735 -0.5080 44 1 5.4955 -1.2033 -0.4997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133879726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:35 Heat of formation + Delta-G solvation = 18.617273 kcal Electronic energy + Delta-G solvation = -24426.282156 eV Core-core repulsion = 20993.488863 eV Total energy + Delta-G solvation = -3432.793293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.55833 -40.69787 -38.41989 -36.25111 -34.97517 -34.12569 -32.95986 -31.34050 -30.73242 -30.55159 -27.60588 -26.47583 -25.39243 -24.73127 -22.63065 -21.85511 -21.28074 -20.64156 -19.68548 -18.72333 -17.50389 -17.38676 -16.87274 -16.54944 -16.00364 -15.81026 -15.31353 -15.17569 -14.79445 -14.57563 -14.34434 -14.33670 -14.12874 -14.01143 -13.46634 -13.32700 -13.28173 -13.22064 -13.10841 -12.99855 -12.82357 -12.64367 -12.29563 -12.00853 -11.88519 -11.71572 -11.68438 -11.43203 -11.12856 -10.96280 -10.31788 -9.96221 -9.83879 -9.26411 -8.01188 -5.31229 0.21272 1.32899 1.38432 1.39346 1.44005 1.54911 2.15033 2.24337 2.48465 3.32228 3.50640 3.53547 3.66556 3.84145 4.03887 4.10663 4.21614 4.27422 4.35693 4.40743 4.52150 4.58014 4.64988 4.67972 4.78291 4.84513 4.91030 4.92090 5.00637 5.03835 5.10264 5.14751 5.20449 5.34146 5.37807 5.54026 5.58648 5.62615 5.75210 5.80399 6.23709 6.45535 7.03505 7.11874 7.15809 7.90768 8.06377 9.21257 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.004782 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.944794 B = 5853.368209 C = 6281.612488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.013 3.987 3 C -0.178 4.178 4 C -0.055 4.055 5 C 0.585 3.415 6 O -0.578 6.578 7 N -0.686 5.686 8 C 0.142 3.858 9 H 0.054 0.946 10 C -0.152 4.152 11 C -0.121 4.121 12 C 0.165 3.835 13 H 0.042 0.958 14 C -0.157 4.157 15 N -0.748 5.748 16 C -0.212 4.212 17 H 0.052 0.948 18 C -0.069 4.069 19 N -0.989 5.989 20 Si 0.948 3.052 21 H -0.291 1.291 22 H -0.298 1.298 23 H -0.244 1.244 24 N -0.272 5.272 25 C 0.082 3.918 26 N -0.303 5.303 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.415 0.585 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.080 0.920 40 H 0.362 0.638 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 1.607 19.552 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.143 4.143 3 C -0.207 4.207 4 C -0.183 4.183 5 C 0.371 3.629 6 O -0.458 6.458 7 N -0.338 5.338 8 C 0.037 3.963 9 H 0.072 0.928 10 C -0.210 4.210 11 C -0.159 4.159 12 C 0.058 3.942 13 H 0.060 0.940 14 C -0.217 4.217 15 N -0.392 5.392 16 C -0.344 4.344 17 H 0.070 0.930 18 C -0.260 4.260 19 N -0.641 5.641 20 Si 0.777 3.223 21 H -0.218 1.218 22 H -0.225 1.225 23 H -0.168 1.168 24 N -0.059 5.059 25 C -0.058 4.058 26 N -0.138 5.138 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.210 0.790 31 H 0.252 0.748 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.195 0.805 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.420 -0.100 19.357 22.474 hybrid contribution 1.230 0.444 -0.600 1.438 sum -10.190 0.343 18.756 21.349 Atomic orbital electron populations 1.20230 0.83650 1.04234 1.04003 1.22717 0.98815 0.88355 1.04403 1.22531 0.89018 1.01824 1.07326 1.21591 0.96271 0.85704 1.14777 1.17152 0.86369 0.83294 0.76045 1.90767 1.31509 1.71655 1.51863 1.45524 1.11082 1.04385 1.72786 1.21041 0.86026 0.92030 0.97163 0.92792 1.22113 1.02955 1.01622 0.94350 1.22157 1.04950 0.94371 0.94404 1.20533 0.88851 0.93854 0.91001 0.93991 1.22284 1.01450 0.97816 1.00128 1.42817 1.04920 1.70932 1.20520 1.18956 0.93313 1.27241 0.94841 0.93046 1.25432 1.01591 1.01609 0.97325 1.69886 1.29862 1.47592 1.16762 0.85495 0.80582 0.78741 0.77517 1.21771 1.22494 1.16787 1.45724 1.05460 1.04723 1.49985 1.22421 0.85189 0.92758 1.05392 1.73094 0.89695 1.29165 1.21811 0.89205 0.88452 0.91128 0.78961 0.74752 0.89764 0.94375 0.90308 0.86767 0.89176 0.93004 0.95747 0.90088 0.80483 0.93755 0.88415 0.87409 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.45 71.24 0.74 -0.19 16 2 C 0.01 0.32 7.22 43.05 0.31 0.63 16 3 C -0.18 -4.18 10.44 22.66 0.24 -3.95 16 4 C -0.06 -1.66 6.96 40.79 0.28 -1.38 16 5 C 0.59 19.61 7.76 86.58 0.67 20.28 16 6 O -0.58 -23.95 14.29 -4.13 -0.06 -24.01 16 7 N -0.69 -18.16 4.44 -446.04 -1.98 -20.13 16 8 C 0.14 3.86 2.57 44.99 0.12 3.98 16 9 H 0.05 2.05 6.98 -2.39 -0.02 2.03 16 10 C -0.15 -3.22 9.48 71.98 0.68 -2.54 16 11 C -0.12 -2.78 4.29 30.59 0.13 -2.65 16 12 C 0.16 5.50 2.84 44.99 0.13 5.63 16 13 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 14 C -0.16 -4.68 9.49 71.98 0.68 -4.00 16 15 N -0.75 -33.81 4.30 -322.95 -1.39 -35.20 16 16 C -0.21 -12.22 10.41 84.04 0.87 -11.34 16 17 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.99 -65.93 13.97 21.65 0.30 -65.62 16 20 Si 0.95 47.55 27.73 68.60 1.90 49.45 16 21 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 22 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 23 H -0.24 -10.70 6.52 99.48 0.65 -10.05 16 24 N -0.27 -8.30 3.75 -356.01 -1.33 -9.64 16 25 C 0.08 2.17 10.89 127.77 1.39 3.56 16 26 N -0.30 -8.86 11.90 -47.49 -0.57 -9.42 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.19 2.91 7.58 -2.91 -0.02 2.89 16 31 H 0.41 7.99 7.63 -92.71 -0.71 7.28 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 41 H 0.25 16.23 8.31 -92.71 -0.77 15.46 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.09 2.89 6.19 -2.39 -0.01 2.88 16 Total: -1.00 -82.58 363.22 3.31 -79.27 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.29 Total: 31.01 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 6.72 Total: 4.30 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -4.96 Total: -140.02 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.90 Total: 49.45 kcal Total: -82.58 3.31 -79.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133879726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.888 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds