Wall clock time and date at job start Tue Mar 31 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39669 * 126.06707 * 2 1 4 4 C 1.38407 * 105.35769 * 179.85025 * 3 2 1 5 5 C 1.47159 * 126.88674 * 180.13945 * 4 3 2 6 6 O 1.21632 * 120.00459 * 181.87836 * 5 4 3 7 7 N 1.34775 * 120.00081 * 1.88108 * 5 4 3 8 8 C 1.46500 * 120.00261 * 183.79535 * 7 5 4 9 9 H 1.08995 * 109.47353 * 29.91281 * 8 7 5 10 10 C 1.52998 * 109.47071 * 269.90931 * 8 7 5 11 11 C 1.53002 * 109.47036 * 149.91249 * 8 7 5 12 12 C 1.53005 * 109.47018 * 292.64107 * 11 8 7 13 13 H 1.08997 * 109.46842 * 306.37696 * 12 11 8 14 14 C 1.52999 * 109.47207 * 186.37058 * 12 11 8 15 15 N 1.46509 * 109.46928 * 66.37337 * 12 11 8 16 16 C 1.36935 * 119.99524 * 209.03899 * 15 12 11 17 17 H 1.07995 * 120.00745 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99498 * 180.02562 * 16 15 12 19 19 N 1.31627 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47282 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47243 * 119.99932 * 20 18 16 23 23 H 1.48503 * 109.47083 * 240.00134 * 20 18 16 24 24 N 1.36602 * 106.23173 * 0.41064 * 4 3 2 25 25 C 1.46501 * 125.19233 * 179.73819 * 24 4 3 26 26 N 1.28448 * 109.61872 * 359.73035 * 24 4 3 27 27 H 1.08995 * 109.47095 * 269.71046 * 1 2 3 28 28 H 1.09005 * 109.47102 * 149.71319 * 1 2 3 29 29 H 1.08993 * 109.47160 * 29.71432 * 1 2 3 30 30 H 1.07997 * 127.32499 * 0.02562 * 3 2 1 31 31 H 0.97008 * 119.99799 * 3.80019 * 7 5 4 32 32 H 1.08999 * 109.47119 * 299.99921 * 10 8 7 33 33 H 1.08995 * 109.46980 * 60.00141 * 10 8 7 34 34 H 1.09006 * 109.46948 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47586 * 52.64175 * 11 8 7 36 36 H 1.09000 * 109.47261 * 172.64223 * 11 8 7 37 37 H 1.09003 * 109.47521 * 300.00448 * 14 12 11 38 38 H 1.09003 * 109.46836 * 60.00446 * 14 12 11 39 39 H 1.08996 * 109.47044 * 180.02562 * 14 12 11 40 40 H 0.96997 * 119.99894 * 29.04273 * 15 12 11 41 41 H 0.96999 * 119.99837 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.46463 * 265.74791 * 25 24 4 43 43 H 1.09002 * 109.47244 * 25.74162 * 25 24 4 44 44 H 1.09003 * 109.47317 * 145.74975 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 0.0035 5 6 4.8664 1.4281 0.0078 6 8 5.9442 0.8653 -0.0240 7 7 4.8101 2.7742 0.0469 8 6 6.0430 3.5615 -0.0327 9 1 6.7831 3.0192 -0.6209 10 6 6.5873 3.8006 1.3770 11 6 5.7471 4.9062 -0.7000 12 6 5.3783 4.6773 -2.1672 13 1 6.1607 4.0931 -2.6515 14 6 5.2377 6.0268 -2.8743 15 7 4.1082 3.9511 -2.2439 16 6 3.8529 3.1290 -3.3089 17 1 4.5879 3.0156 -4.0920 18 6 2.6493 2.4413 -3.3819 19 7 1.7533 2.5798 -2.4276 20 14 2.3012 1.3193 -4.8342 21 1 3.4598 1.3379 -5.7629 22 1 2.0785 -0.0658 -4.3474 23 1 1.0883 1.7945 -5.5472 24 7 3.5173 -0.7223 -0.0040 25 6 4.6450 -1.6575 -0.0091 26 7 2.2775 -1.0578 -0.0058 27 1 -0.3633 -0.0052 1.0276 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8925 -0.5094 30 1 2.0206 2.1639 0.0004 31 1 3.9532 3.2216 0.1279 32 1 5.8471 4.3431 1.9651 33 1 6.7981 2.8427 1.8523 34 1 7.5044 4.3869 1.3177 35 1 4.9159 5.3910 -0.1879 36 1 6.6301 5.5426 -0.6423 37 1 4.4552 6.6111 -2.3899 38 1 6.1826 6.5671 -2.8172 39 1 4.9745 5.8637 -3.9193 40 1 3.4482 4.0526 -1.5404 41 1 0.9121 2.0996 -2.4788 42 1 4.8761 -1.9423 -1.0356 43 1 5.5156 -1.1793 0.4400 44 1 4.3824 -2.5465 0.5644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133879728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:38 Heat of formation + Delta-G solvation = 29.289680 kcal Electronic energy + Delta-G solvation = -25631.465716 eV Core-core repulsion = 22199.135213 eV Total energy + Delta-G solvation = -3432.330503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27404 -40.49618 -38.21070 -35.83331 -34.85046 -33.97814 -32.62409 -31.03610 -30.43794 -30.03111 -27.52854 -26.30654 -25.48679 -24.54159 -22.38072 -21.64890 -21.35757 -20.24334 -19.06568 -18.48193 -17.38912 -17.14705 -16.65303 -16.49293 -15.67736 -15.52326 -15.35988 -15.09386 -14.54037 -14.29985 -14.24217 -14.14405 -13.95530 -13.55940 -13.30890 -13.24804 -13.21744 -13.05838 -12.98644 -12.92160 -12.76380 -12.59279 -12.24211 -12.12478 -11.66164 -11.56502 -11.51408 -11.37866 -10.91294 -10.84259 -10.02568 -9.69591 -9.53597 -8.69436 -7.78380 -4.95993 0.50334 1.38412 1.45595 1.46561 1.61615 1.79296 2.37098 2.59935 2.61343 3.56262 3.68415 3.75905 3.93496 4.10481 4.22654 4.26477 4.29834 4.40846 4.43395 4.60385 4.61118 4.71471 4.75256 4.88326 4.92035 4.93247 4.96327 4.98012 5.11940 5.16760 5.18535 5.21273 5.28834 5.41038 5.46794 5.65925 5.67129 5.76693 5.85010 5.99846 6.45812 6.64811 7.23179 7.35004 7.55371 8.26316 8.54991 9.41933 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.008500 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.588549 B = 3293.315738 C = 4759.726455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.001 4.001 3 C -0.116 4.116 4 C -0.064 4.064 5 C 0.601 3.399 6 O -0.592 6.592 7 N -0.672 5.672 8 C 0.148 3.852 9 H 0.060 0.940 10 C -0.151 4.151 11 C -0.120 4.120 12 C 0.162 3.838 13 H 0.028 0.972 14 C -0.153 4.153 15 N -0.715 5.715 16 C -0.229 4.229 17 H 0.046 0.954 18 C -0.033 4.033 19 N -0.913 5.913 20 Si 0.923 3.077 21 H -0.288 1.288 22 H -0.315 1.315 23 H -0.293 1.293 24 N -0.279 5.279 25 C 0.088 3.912 26 N -0.306 5.306 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.166 0.834 31 H 0.406 0.594 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.377 0.623 41 H 0.249 0.751 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 2.632 9.786 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.157 4.157 3 C -0.145 4.145 4 C -0.191 4.191 5 C 0.388 3.612 6 O -0.475 6.475 7 N -0.322 5.322 8 C 0.044 3.956 9 H 0.078 0.922 10 C -0.210 4.210 11 C -0.158 4.158 12 C 0.053 3.947 13 H 0.046 0.954 14 C -0.213 4.213 15 N -0.358 5.358 16 C -0.361 4.361 17 H 0.064 0.936 18 C -0.229 4.229 19 N -0.562 5.562 20 Si 0.757 3.243 21 H -0.214 1.214 22 H -0.244 1.244 23 H -0.221 1.221 24 N -0.068 5.068 25 C -0.051 4.051 26 N -0.141 5.141 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.183 0.817 31 H 0.243 0.757 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.211 0.789 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.203 0.941 9.573 10.936 hybrid contribution -0.900 -0.057 -1.398 1.664 sum 4.303 0.884 8.175 9.281 Atomic orbital electron populations 1.20069 0.84990 1.03052 1.03313 1.22428 0.98304 0.88869 1.06103 1.22156 0.89533 1.00524 1.02255 1.21447 0.96444 0.85307 1.15854 1.16845 0.85879 0.83150 0.75333 1.90634 1.30757 1.71632 1.54476 1.45546 1.11030 1.04129 1.71452 1.21019 0.85546 0.91772 0.97233 0.92181 1.22114 1.02196 1.01552 0.95101 1.22169 1.03576 0.95374 0.94726 1.20489 0.87961 0.91727 0.94500 0.95429 1.22275 1.01062 0.98291 0.99694 1.42358 1.16444 1.52083 1.24873 1.19121 0.99143 1.18062 0.99817 0.93586 1.24723 0.97666 1.01553 0.98955 1.69530 1.07900 1.46113 1.32705 0.85856 0.77127 0.79359 0.81930 1.21434 1.24372 1.22082 1.45546 1.05085 1.04687 1.51493 1.22330 0.85675 0.92882 1.04244 1.72912 0.90059 1.28822 1.22314 0.89171 0.91716 0.90286 0.81703 0.75726 0.91143 0.94152 0.89417 0.90326 0.87287 0.93178 0.91386 0.95528 0.78928 0.94081 0.90899 0.87589 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.45 71.24 0.74 -0.97 16 2 C 0.00 -0.02 7.22 43.05 0.31 0.29 16 3 C -0.12 -4.67 8.91 22.66 0.20 -4.47 16 4 C -0.06 -2.65 6.96 40.79 0.28 -2.37 16 5 C 0.60 24.43 7.79 86.59 0.67 25.10 16 6 O -0.59 -25.72 14.23 -4.13 -0.06 -25.78 16 7 N -0.67 -23.15 3.66 -446.07 -1.63 -24.78 16 8 C 0.15 4.32 2.60 44.99 0.12 4.44 16 9 H 0.06 2.09 7.45 -2.39 -0.02 2.07 16 10 C -0.15 -3.42 9.51 71.98 0.68 -2.74 16 11 C -0.12 -3.06 4.42 30.60 0.14 -2.92 16 12 C 0.16 5.59 2.89 44.99 0.13 5.72 16 13 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 14 C -0.15 -4.76 9.52 71.98 0.68 -4.07 16 15 N -0.72 -30.77 3.79 -322.92 -1.22 -32.00 16 16 C -0.23 -11.83 9.93 84.04 0.83 -10.99 16 17 H 0.05 2.51 7.83 -2.91 -0.02 2.49 16 18 C -0.03 -1.75 5.50 84.86 0.47 -1.28 16 19 N -0.91 -46.76 10.76 21.65 0.23 -46.53 16 20 Si 0.92 46.54 29.55 68.60 2.03 48.57 16 21 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.31 -16.86 7.11 99.48 0.71 -16.15 16 23 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 24 N -0.28 -11.22 3.75 -356.01 -1.33 -12.55 16 25 C 0.09 2.85 10.93 127.77 1.40 4.25 16 26 N -0.31 -12.47 11.90 -47.49 -0.57 -13.04 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.17 6.61 6.89 -2.91 -0.02 6.59 16 31 H 0.41 13.74 6.22 -92.70 -0.58 13.16 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 2.09 8.13 -2.39 -0.02 2.07 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.38 16.37 6.30 -92.71 -0.58 15.79 16 41 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.11 3.46 6.11 -2.39 -0.01 3.45 16 44 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -63.81 358.58 3.95 -59.86 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.16 Total: 36.28 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.67 Total: 9.97 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -4.53 Total: -128.90 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -63.81 3.95 -59.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133879728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.150 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds