Wall clock time and date at job start Tue Mar 31 2020 03:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 H 1.08993 * 109.47012 * 55.00034 * 5 4 2 7 7 C 1.53001 * 109.47035 * 174.99875 * 5 4 2 8 8 N 1.46501 * 109.47107 * 294.99725 * 5 4 2 9 9 C 1.34770 * 119.99608 * 154.99829 * 8 5 4 10 10 O 1.21282 * 120.00534 * 0.02562 * 9 8 5 11 11 C 1.50703 * 119.99953 * 179.97438 * 9 8 5 12 12 C 1.50692 * 109.47533 * 180.02562 * 11 9 8 13 13 C 1.39871 * 126.04240 * 269.69427 * 12 11 9 14 14 N 1.30837 * 108.20413 * 179.81183 * 13 12 11 15 15 N 1.40085 * 108.20264 * 0.44583 * 14 13 12 16 16 C 1.46500 * 126.03353 * 179.69420 * 15 14 13 17 17 C 1.34944 * 107.92816 * 359.71024 * 15 14 13 18 18 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 19 19 C 1.36940 * 120.00114 * 275.00271 * 18 2 1 20 20 H 1.07993 * 119.99751 * 359.97438 * 19 18 2 21 21 C 1.38813 * 120.00020 * 179.97438 * 19 18 2 22 22 N 1.31623 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46987 * 90.00577 * 23 21 19 25 25 H 1.48502 * 109.47063 * 210.00262 * 23 21 19 26 26 H 1.48499 * 109.47321 * 330.00080 * 23 21 19 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 31 31 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 32 32 H 1.09000 * 109.47516 * 300.00130 * 7 5 4 33 33 H 1.09006 * 109.47111 * 59.99827 * 7 5 4 34 34 H 1.09000 * 109.47307 * 179.97438 * 7 5 4 35 35 H 0.97001 * 119.99978 * 335.00469 * 8 5 4 36 36 H 1.09000 * 109.47463 * 300.00569 * 11 9 8 37 37 H 1.09000 * 109.47014 * 60.00005 * 11 9 8 38 38 H 1.07996 * 125.89835 * 359.97438 * 13 12 11 39 39 H 1.08998 * 109.47687 * 270.01635 * 16 15 14 40 40 H 1.08996 * 109.47539 * 30.02671 * 16 15 14 41 41 H 1.09001 * 109.47251 * 150.02158 * 16 15 14 42 42 H 1.07996 * 126.12785 * 179.97438 * 17 15 14 43 43 H 0.97005 * 120.00153 * 94.99794 * 18 2 1 44 44 H 0.96993 * 119.99993 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.9954 -0.9921 -0.3869 7 6 4.0852 -1.4381 -2.4926 8 7 3.9480 0.7896 -1.4925 9 6 5.1611 1.2137 -1.0867 10 8 5.9359 0.4341 -0.5740 11 6 5.5555 2.6565 -1.2710 12 6 6.9493 2.8683 -0.7388 13 6 7.2839 3.2364 0.5685 14 7 8.5872 3.3181 0.6492 15 7 9.1235 3.0141 -0.6088 16 6 10.5462 2.9956 -0.9575 17 6 8.0981 2.7416 -1.4426 18 7 2.0184 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8927 1.0404 2.4241 21 6 2.6115 -0.6620 3.5092 22 7 2.9246 -1.9391 3.4501 23 14 2.7905 0.2700 5.1181 24 1 1.5227 0.1797 5.8862 25 1 3.8947 -0.3238 5.9139 26 1 3.0964 1.6950 4.8334 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -1.7714 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8002 -2.4817 -2.3597 33 1 3.6546 -1.0591 -3.4194 34 1 5.1715 -1.3608 -2.5388 35 1 3.3284 1.4131 -1.9028 36 1 5.5298 2.9076 -2.3314 37 1 4.8583 3.2957 -0.7294 38 1 6.5870 3.4189 1.3730 39 1 10.8480 3.9834 -1.3054 40 1 11.1322 2.7250 -0.0792 41 1 10.7172 2.2643 -1.7476 42 1 8.1796 2.4715 -2.4850 43 1 2.2491 -1.6318 1.1525 44 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133897000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:02 Heat of formation + Delta-G solvation = 43.927048 kcal Electronic energy + Delta-G solvation = -24010.712956 eV Core-core repulsion = 20579.017176 eV Total energy + Delta-G solvation = -3431.695779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13357 -39.25193 -36.73349 -34.34269 -33.56395 -32.15687 -31.71684 -30.41428 -28.54667 -28.14396 -26.27202 -25.68145 -23.54796 -21.62436 -21.03233 -20.42562 -19.75218 -19.61361 -17.24356 -16.84278 -16.59595 -15.65428 -15.31172 -14.93455 -14.59694 -14.36254 -13.90356 -13.68165 -13.48723 -13.35286 -13.00469 -12.88659 -12.62934 -12.56836 -12.34963 -12.11796 -11.96955 -11.67906 -11.58870 -11.51519 -10.94875 -10.77022 -10.54166 -10.48835 -10.34277 -10.15884 -9.82414 -9.55032 -9.37733 -9.31316 -8.80774 -8.54534 -8.27876 -6.84818 -5.66106 -2.93786 1.96033 2.57320 2.86393 3.17008 3.50665 3.55754 3.57955 3.76874 4.49368 4.68804 4.82115 4.99174 5.08457 5.15874 5.21151 5.24980 5.32696 5.45564 5.51664 5.57192 5.69072 5.74351 5.77712 5.86453 5.96596 6.01420 6.07832 6.18243 6.20395 6.35494 6.42386 6.50996 6.63763 6.74000 6.82247 6.91352 7.04833 7.05203 7.13709 7.78643 7.78804 7.99061 8.52331 8.77499 9.63604 10.21475 10.55314 11.56787 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.004831 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.093437 B = 5794.378777 C = 7369.130116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.159 4.159 8 N -0.721 5.721 9 C 0.511 3.489 10 O -0.527 6.527 11 C -0.060 4.060 12 C -0.213 4.213 13 C 0.068 3.932 14 N -0.301 5.301 15 N -0.381 5.381 16 C 0.105 3.895 17 C 0.063 3.937 18 N -0.720 5.720 19 C -0.233 4.233 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.902 3.098 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.183 0.817 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.169 0.831 43 H 0.382 0.618 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 9.803 -17.091 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.122 0.878 7 C -0.218 4.218 8 N -0.372 5.372 9 C 0.296 3.704 10 O -0.402 6.402 11 C -0.102 4.102 12 C -0.225 4.225 13 C -0.118 4.118 14 N -0.122 5.122 15 N -0.163 5.163 16 C -0.037 4.037 17 C -0.083 4.083 18 N -0.362 5.362 19 C -0.365 4.365 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.226 0.774 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.200 0.800 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.186 0.814 43 H 0.216 0.784 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.661 9.587 -15.848 20.446 hybrid contribution -0.908 0.158 0.229 0.949 sum 7.753 9.744 -15.618 19.975 Atomic orbital electron populations 1.22468 0.99675 1.00738 0.99704 1.20212 0.91426 0.95586 0.86555 0.93571 1.22158 0.93954 1.02047 0.98734 1.20971 0.94857 0.80563 0.99635 0.87843 1.22173 1.01372 1.00131 0.98114 1.45986 1.16655 1.11393 1.63201 1.20572 0.81766 0.90122 0.77921 1.90727 1.51044 1.56498 1.41888 1.19901 0.93657 0.94389 1.02218 1.19426 0.94251 1.14213 0.94600 1.23801 0.92655 0.98282 0.97102 1.77345 1.10415 1.24036 1.00372 1.48352 1.06315 1.54097 1.07550 1.21780 0.76871 1.02715 1.02311 1.22155 0.87463 1.01389 0.97260 1.42397 1.77953 1.10556 1.05286 1.19149 1.36343 0.93647 0.87313 0.91503 1.24684 1.02225 0.95924 0.97923 1.69645 1.51004 1.08665 1.28703 0.86265 0.77144 0.78923 0.84322 1.21933 1.21863 1.20830 0.94756 0.93611 0.92949 0.90859 0.92163 0.91971 0.93283 0.92697 0.77447 0.88964 0.88223 0.80039 0.91066 0.89437 0.89731 0.81382 0.78391 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.34 2.52 -67.93 -0.17 2.17 16 6 H 0.10 2.26 7.05 -51.93 -0.37 1.89 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 8 N -0.72 -10.21 4.45 -53.81 -0.24 -10.45 16 9 C 0.51 8.20 7.79 -10.99 -0.09 8.12 16 10 O -0.53 -11.26 15.70 5.56 0.09 -11.17 16 11 C -0.06 -0.71 6.18 -29.04 -0.18 -0.89 16 12 C -0.21 -2.97 4.59 -105.06 -0.48 -3.45 16 13 C 0.07 1.06 11.96 -17.36 -0.21 0.85 16 14 N -0.30 -4.86 12.58 30.62 0.39 -4.47 16 15 N -0.38 -4.97 4.01 -68.17 -0.27 -5.25 16 16 C 0.10 0.85 11.47 59.85 0.69 1.53 16 17 C 0.06 0.78 11.40 -17.22 -0.20 0.59 16 18 N -0.72 -17.82 4.49 -53.43 -0.24 -18.06 16 19 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 23 Si 0.90 23.23 29.55 -169.99 -5.02 18.21 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.39 4.24 8.60 -40.82 -0.35 3.89 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -37.11 371.72 -6.78 -43.89 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.32 Total: 11.53 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.48 Total: -1.63 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.36 Total: -66.43 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.11 -6.78 -43.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133897000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.814 kcal (2) G-P(sol) polarization free energy of solvation -37.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds