Wall clock time and date at job start Tue Mar 31 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30447 * 125.98634 * 2 1 4 4 N 1.39937 * 108.89548 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.75493 * 180.02562 * 4 3 2 6 6 C 1.34264 * 108.49058 * 359.74703 * 4 3 2 7 7 C 1.38051 * 107.41658 * 0.39977 * 6 4 3 8 8 C 1.47427 * 126.41323 * 179.86626 * 7 6 4 9 9 O 1.21600 * 119.99764 * 179.68541 * 8 7 6 10 10 N 1.34779 * 119.99900 * 359.68923 * 8 7 6 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 14 14 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 15 15 C 1.52994 * 109.47404 * 294.99774 * 14 11 10 16 16 H 1.09004 * 109.47057 * 55.00109 * 15 14 11 17 17 C 1.53000 * 109.47356 * 174.99986 * 15 14 11 18 18 N 1.46498 * 109.47321 * 295.00158 * 15 14 11 19 19 C 1.36933 * 119.99922 * 154.99712 * 18 15 14 20 20 H 1.08001 * 120.00266 * 0.02562 * 19 18 15 21 21 C 1.38814 * 120.00103 * 179.97438 * 19 18 15 22 22 N 1.31622 * 119.99630 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00202 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47151 * 60.00244 * 23 21 19 25 25 H 1.48507 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47077 * 299.99793 * 23 21 19 27 27 H 1.09004 * 109.47136 * 269.95355 * 1 2 3 28 28 H 1.09003 * 109.47236 * 29.95686 * 1 2 3 29 29 H 1.09007 * 109.47317 * 149.95730 * 1 2 3 30 30 H 1.08998 * 109.47264 * 89.97261 * 5 4 3 31 31 H 1.08998 * 109.47061 * 209.97263 * 5 4 3 32 32 H 1.08999 * 109.46799 * 329.97226 * 5 4 3 33 33 H 1.08004 * 126.29233 * 180.24043 * 6 4 3 34 34 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46724 * 60.00549 * 13 11 10 36 36 H 1.09001 * 109.47194 * 179.97438 * 13 11 10 37 37 H 1.08992 * 109.47399 * 300.00063 * 13 11 10 38 38 H 1.09000 * 109.47325 * 54.99943 * 14 11 10 39 39 H 1.09008 * 109.47017 * 174.99852 * 14 11 10 40 40 H 1.09006 * 109.47194 * 300.00318 * 17 15 14 41 41 H 1.08994 * 109.47345 * 60.00428 * 17 15 14 42 42 H 1.09006 * 109.47459 * 180.02562 * 17 15 14 43 43 H 0.96992 * 120.00062 * 334.99652 * 18 15 14 44 44 H 0.97007 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5291 -0.0003 6 6 3.6439 -0.6980 0.0047 7 6 2.3372 -1.1433 -0.0006 8 6 1.8915 -2.5485 -0.0004 9 8 0.7039 -2.8097 0.0004 10 7 2.8004 -3.5437 -0.0010 11 6 2.3575 -4.9402 -0.0003 12 1 1.4447 -5.0322 -0.5888 13 6 2.0850 -5.3880 1.4371 14 6 3.4489 -5.8217 -0.6108 15 6 3.6341 -5.4567 -2.0849 16 1 3.8381 -4.3894 -2.1721 17 6 4.8084 -6.2491 -2.6630 18 7 2.4131 -5.7826 -2.8259 19 6 2.1191 -5.1189 -3.9870 20 1 2.7875 -4.3555 -4.3567 21 6 0.9624 -5.4281 -4.6894 22 7 0.1481 -6.3590 -4.2391 23 14 0.5609 -4.5223 -6.2730 24 1 1.6492 -4.7429 -7.2590 25 1 -0.7192 -5.0340 -6.8251 26 1 0.4332 -3.0694 -5.9934 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5132 29 1 -0.3634 -0.8896 -0.5145 30 1 5.0682 1.7482 1.0275 31 1 5.6058 1.0393 -0.5142 32 1 4.5307 2.4579 -0.5138 33 1 4.5298 -1.3158 0.0093 34 1 3.7478 -3.3354 -0.0020 35 1 1.3074 -4.7600 1.8720 36 1 1.7550 -6.4269 1.4377 37 1 2.9977 -5.2960 2.0256 38 1 4.3856 -5.6625 -0.0766 39 1 3.1578 -6.8690 -0.5296 40 1 5.7169 -6.0066 -2.1116 41 1 4.6045 -7.3163 -2.5759 42 1 4.9406 -5.9887 -3.7132 43 1 1.8130 -6.4685 -2.4941 44 1 -0.6605 -6.5748 -4.7297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133935668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:42 Heat of formation + Delta-G solvation = 39.661289 kcal Electronic energy + Delta-G solvation = -24339.289048 eV Core-core repulsion = 20907.408292 eV Total energy + Delta-G solvation = -3431.880756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37535 -39.02336 -36.67013 -34.42856 -33.90143 -32.18555 -31.28848 -29.72328 -29.25539 -28.52461 -26.28006 -25.89083 -23.56716 -22.75375 -21.19804 -20.12072 -19.69169 -19.48970 -17.65189 -17.07063 -15.97051 -15.82266 -15.53403 -14.72328 -14.47949 -14.19401 -13.90819 -13.66909 -13.60008 -13.36839 -13.14576 -12.85864 -12.61030 -12.55470 -12.18944 -12.07384 -11.98664 -11.84093 -11.67726 -11.54148 -10.96316 -10.82868 -10.75881 -10.55188 -10.34470 -10.18445 -9.84288 -9.55139 -9.39844 -9.32918 -8.80780 -8.71358 -8.44896 -6.85139 -5.66130 -2.93755 1.52780 2.27669 2.28966 3.50484 3.55614 3.55856 3.63271 3.84937 4.27631 4.52166 4.68507 4.83147 4.86000 5.10254 5.15857 5.25126 5.43619 5.50330 5.52019 5.57850 5.69468 5.77720 5.83914 5.96126 6.00479 6.02416 6.06751 6.15861 6.20139 6.34441 6.43337 6.50574 6.61745 6.64211 6.73468 6.82019 6.90244 7.04328 7.12409 7.57666 7.78108 7.99621 8.52308 8.76834 9.63620 10.21080 10.55269 11.56590 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.005085 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.624552 B = 5505.014111 C = 6297.770460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.307 5.307 4 N -0.366 5.366 5 C 0.099 3.901 6 C 0.095 3.905 7 C -0.277 4.277 8 C 0.593 3.407 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.146 3.854 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.130 4.130 15 C 0.172 3.828 16 H 0.045 0.955 17 C -0.165 4.165 18 N -0.719 5.719 19 C -0.233 4.233 20 H 0.065 0.935 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.181 0.819 34 H 0.388 0.612 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.625 10.676 13.016 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.130 5.130 4 N -0.144 5.144 5 C -0.042 4.042 6 C -0.056 4.056 7 C -0.292 4.292 8 C 0.380 3.620 9 O -0.410 6.410 10 N -0.366 5.366 11 C 0.042 3.958 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.063 0.937 17 C -0.226 4.226 18 N -0.361 5.361 19 C -0.365 4.365 20 H 0.083 0.917 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.214 1.214 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.221 0.779 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.901 11.963 12.859 20.672 hybrid contribution 0.384 -0.511 -0.915 1.116 sum 11.285 11.452 11.945 20.030 Atomic orbital electron populations 1.20365 0.85639 1.04350 1.03320 1.22486 0.97311 0.88773 0.94833 1.77161 0.85910 1.22718 1.27176 1.48233 1.06092 1.04712 1.55410 1.21935 0.83944 0.94799 1.03538 1.23040 0.98974 0.85182 0.98425 1.20404 0.91940 0.94975 1.21892 1.17131 0.85816 0.83242 0.75787 1.90755 1.16248 1.84012 1.50007 1.45784 1.08668 1.06240 1.75923 1.20995 0.99978 0.79148 0.95702 0.87578 1.22182 1.01159 1.01523 0.96996 1.22164 0.97443 0.99940 0.97366 1.20212 0.87992 0.96782 0.88836 0.93697 1.22467 0.98029 1.00920 1.01137 1.42368 1.22148 1.45574 1.25995 1.19088 1.04057 1.14443 0.98885 0.91687 1.24670 0.97561 0.99292 0.99142 1.69636 1.13933 1.34054 1.40346 0.86354 0.77271 0.79351 0.83742 1.21514 1.21711 1.21379 0.90402 0.91258 0.88148 0.90507 0.89150 0.89017 0.80218 0.77870 0.92463 0.91858 0.93331 0.92225 0.90683 0.94832 0.93543 0.92989 0.78327 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.92 36.01 0.36 -0.77 16 2 C 0.13 2.09 7.26 -82.02 -0.60 1.50 16 3 N -0.31 -4.53 12.50 33.90 0.42 -4.11 16 4 N -0.37 -4.19 3.98 -67.60 -0.27 -4.45 16 5 C 0.10 0.61 11.44 59.85 0.68 1.30 16 6 C 0.09 1.08 10.99 -16.56 -0.18 0.89 16 7 C -0.28 -4.24 6.13 -105.07 -0.64 -4.88 16 8 C 0.59 10.42 7.78 -12.52 -0.10 10.32 16 9 O -0.53 -11.42 14.58 5.28 0.08 -11.35 16 10 N -0.72 -10.66 4.44 -54.88 -0.24 -10.91 16 11 C 0.15 2.38 2.52 -67.93 -0.17 2.20 16 12 H 0.11 2.29 7.05 -51.93 -0.37 1.92 16 13 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 14 C -0.13 -1.97 4.29 -26.74 -0.11 -2.09 16 15 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 16 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 17 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 18 N -0.72 -17.72 4.49 -53.43 -0.24 -17.96 16 19 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 23 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.68 6.56 -51.93 -0.34 1.34 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.18 1.26 7.46 -52.48 -0.39 0.87 16 34 H 0.39 4.46 7.53 -40.82 -0.31 4.16 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.38 10.13 7.80 -40.82 -0.32 9.82 16 44 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -35.99 367.43 -6.67 -42.65 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.16 Total: 10.32 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.50 Total: 0.04 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.40 Total: -65.39 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.99 -6.67 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133935668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.315 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds