Wall clock time and date at job start Tue Mar 31 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30447 * 125.98634 * 2 1 4 4 N 1.39937 * 108.89548 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.75493 * 180.02562 * 4 3 2 6 6 C 1.34264 * 108.49058 * 359.74703 * 4 3 2 7 7 C 1.38051 * 107.41658 * 0.39977 * 6 4 3 8 8 C 1.47427 * 126.41323 * 179.86626 * 7 6 4 9 9 O 1.21600 * 119.99764 * 179.68541 * 8 7 6 10 10 N 1.34779 * 119.99900 * 359.68923 * 8 7 6 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 14 14 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 15 15 C 1.52994 * 109.47404 * 294.99774 * 14 11 10 16 16 H 1.09004 * 109.47057 * 55.00109 * 15 14 11 17 17 C 1.53000 * 109.47356 * 174.99986 * 15 14 11 18 18 N 1.46498 * 109.47321 * 295.00158 * 15 14 11 19 19 C 1.36933 * 119.99922 * 154.99712 * 18 15 14 20 20 H 1.08001 * 120.00266 * 0.02562 * 19 18 15 21 21 C 1.38814 * 120.00103 * 179.97438 * 19 18 15 22 22 N 1.31622 * 119.99630 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00202 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47151 * 60.00244 * 23 21 19 25 25 H 1.48507 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47077 * 299.99793 * 23 21 19 27 27 H 1.09004 * 109.47136 * 269.95355 * 1 2 3 28 28 H 1.09003 * 109.47236 * 29.95686 * 1 2 3 29 29 H 1.09007 * 109.47317 * 149.95730 * 1 2 3 30 30 H 1.08998 * 109.47264 * 89.97261 * 5 4 3 31 31 H 1.08998 * 109.47061 * 209.97263 * 5 4 3 32 32 H 1.08999 * 109.46799 * 329.97226 * 5 4 3 33 33 H 1.08004 * 126.29233 * 180.24043 * 6 4 3 34 34 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46724 * 60.00549 * 13 11 10 36 36 H 1.09001 * 109.47194 * 179.97438 * 13 11 10 37 37 H 1.08992 * 109.47399 * 300.00063 * 13 11 10 38 38 H 1.09000 * 109.47325 * 54.99943 * 14 11 10 39 39 H 1.09008 * 109.47017 * 174.99852 * 14 11 10 40 40 H 1.09006 * 109.47194 * 300.00318 * 17 15 14 41 41 H 1.08994 * 109.47345 * 60.00428 * 17 15 14 42 42 H 1.09006 * 109.47459 * 180.02562 * 17 15 14 43 43 H 0.96992 * 120.00062 * 334.99652 * 18 15 14 44 44 H 0.97007 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5291 -0.0003 6 6 3.6439 -0.6980 0.0047 7 6 2.3372 -1.1433 -0.0006 8 6 1.8915 -2.5485 -0.0004 9 8 0.7039 -2.8097 0.0004 10 7 2.8004 -3.5437 -0.0010 11 6 2.3575 -4.9402 -0.0003 12 1 1.4447 -5.0322 -0.5888 13 6 2.0850 -5.3880 1.4371 14 6 3.4489 -5.8217 -0.6108 15 6 3.6341 -5.4567 -2.0849 16 1 3.8381 -4.3894 -2.1721 17 6 4.8084 -6.2491 -2.6630 18 7 2.4131 -5.7826 -2.8259 19 6 2.1191 -5.1189 -3.9870 20 1 2.7875 -4.3555 -4.3567 21 6 0.9624 -5.4281 -4.6894 22 7 0.1481 -6.3590 -4.2391 23 14 0.5609 -4.5223 -6.2730 24 1 1.6492 -4.7429 -7.2590 25 1 -0.7192 -5.0340 -6.8251 26 1 0.4332 -3.0694 -5.9934 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5132 29 1 -0.3634 -0.8896 -0.5145 30 1 5.0682 1.7482 1.0275 31 1 5.6058 1.0393 -0.5142 32 1 4.5307 2.4579 -0.5138 33 1 4.5298 -1.3158 0.0093 34 1 3.7478 -3.3354 -0.0020 35 1 1.3074 -4.7600 1.8720 36 1 1.7550 -6.4269 1.4377 37 1 2.9977 -5.2960 2.0256 38 1 4.3856 -5.6625 -0.0766 39 1 3.1578 -6.8690 -0.5296 40 1 5.7169 -6.0066 -2.1116 41 1 4.6045 -7.3163 -2.5759 42 1 4.9406 -5.9887 -3.7132 43 1 1.8130 -6.4685 -2.4941 44 1 -0.6605 -6.5748 -4.7297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133935668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:42 Heat of formation + Delta-G solvation = 13.348032 kcal Electronic energy + Delta-G solvation = -24340.430077 eV Core-core repulsion = 20907.408292 eV Total energy + Delta-G solvation = -3433.021785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38499 -40.32837 -38.17128 -35.99619 -34.87718 -33.99843 -32.62262 -30.83424 -30.37409 -30.20344 -27.54250 -26.80166 -25.62508 -23.85566 -22.36913 -21.43968 -21.05018 -20.64724 -19.27077 -18.56889 -17.20201 -16.80882 -16.74354 -16.41707 -15.67954 -15.61921 -15.45160 -15.17831 -14.77794 -14.43980 -14.35869 -14.12299 -14.04075 -13.55293 -13.36663 -13.31786 -13.14472 -12.99741 -12.96614 -12.86347 -12.74704 -12.62401 -12.23020 -12.17160 -11.89267 -11.75767 -11.50719 -11.36166 -10.87863 -10.72149 -10.34664 -9.96827 -9.53245 -8.90502 -7.88964 -5.13479 0.58073 1.11633 1.42397 1.46467 1.49853 1.51002 2.41829 2.58259 2.60421 3.40550 3.45525 3.73702 3.89101 4.05735 4.08260 4.19340 4.35294 4.40781 4.45666 4.47645 4.52371 4.61911 4.71467 4.72396 4.76332 4.85103 4.89299 4.95107 4.97201 5.02326 5.10355 5.15300 5.31780 5.41319 5.48226 5.52128 5.56709 5.68830 5.77835 5.94860 6.34486 6.53442 6.83798 7.40176 7.53218 8.21906 8.40545 9.34773 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.005085 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.624552 B = 5505.014111 C = 6297.770460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.109 3.891 3 N -0.330 5.330 4 N -0.358 5.358 5 C 0.086 3.914 6 C 0.125 3.875 7 C -0.318 4.318 8 C 0.587 3.413 9 O -0.589 6.589 10 N -0.701 5.701 11 C 0.149 3.851 12 H 0.044 0.956 13 C -0.150 4.150 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.044 0.956 17 C -0.156 4.156 18 N -0.731 5.731 19 C -0.223 4.223 20 H 0.068 0.932 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.297 1.297 26 H -0.289 1.289 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.409 0.591 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.910 11.645 14.043 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 N -0.153 5.153 4 N -0.136 5.136 5 C -0.053 4.053 6 C -0.028 4.028 7 C -0.333 4.333 8 C 0.375 3.625 9 O -0.470 6.470 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.062 0.938 13 C -0.208 4.208 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.062 0.938 17 C -0.215 4.215 18 N -0.371 5.371 19 C -0.356 4.356 20 H 0.086 0.914 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.216 1.216 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.246 0.754 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.201 0.799 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.297 12.977 13.899 24.405 hybrid contribution -0.776 -0.716 -1.164 1.572 sum 14.521 12.261 12.735 22.877 Atomic orbital electron populations 1.20253 0.86151 1.03260 1.03600 1.22625 0.97718 0.89604 0.95760 1.77084 0.87679 1.22686 1.27892 1.48702 1.06067 1.05572 1.53235 1.22440 0.82767 0.94507 1.05544 1.23640 0.98845 0.85447 0.94913 1.20342 0.93925 0.93523 1.25559 1.17572 0.85379 0.84609 0.74905 1.90727 1.18636 1.84941 1.52664 1.45587 1.09438 1.05237 1.74957 1.20788 0.98099 0.80293 0.96411 0.93770 1.22074 1.02118 1.01179 0.95463 1.22071 0.99114 0.99396 0.94897 1.20538 0.86241 0.97026 0.90659 0.93784 1.22307 0.98951 1.00114 1.00163 1.42594 1.24011 1.44912 1.25629 1.19447 1.03316 1.13437 0.99380 0.91369 1.25391 0.98218 1.00867 1.02464 1.69790 1.14373 1.36144 1.41688 0.85426 0.76989 0.77884 0.80825 1.20086 1.22332 1.21569 0.89539 0.90110 0.91244 0.88354 0.85696 0.88960 0.75252 0.75446 0.94612 0.91385 0.89850 0.87228 0.90742 0.90232 0.94076 0.95346 0.79886 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 9.92 71.24 0.71 -1.58 16 2 C 0.11 3.49 7.26 43.52 0.32 3.80 16 3 N -0.33 -9.42 12.50 -46.68 -0.58 -10.00 16 4 N -0.36 -7.08 3.98 -367.78 -1.46 -8.54 16 5 C 0.09 0.70 11.44 127.77 1.46 2.16 16 6 C 0.12 2.40 10.99 84.28 0.93 3.33 16 7 C -0.32 -9.55 6.13 -20.15 -0.12 -9.67 16 8 C 0.59 20.96 7.78 86.66 0.67 21.63 16 9 O -0.59 -27.03 14.58 -4.03 -0.06 -27.09 16 10 N -0.70 -19.87 4.44 -445.80 -1.98 -21.85 16 11 C 0.15 4.76 2.52 44.99 0.11 4.87 16 12 H 0.04 2.00 7.05 -2.39 -0.02 1.98 16 13 C -0.15 -3.98 9.48 71.98 0.68 -3.29 16 14 C -0.12 -3.19 4.29 30.59 0.13 -3.06 16 15 C 0.16 5.84 2.84 44.99 0.13 5.96 16 16 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 17 C -0.16 -4.91 9.49 71.98 0.68 -4.22 16 18 N -0.73 -36.44 4.49 -322.95 -1.45 -37.89 16 19 C -0.22 -12.67 9.93 84.03 0.83 -11.84 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 23 Si 0.96 48.82 29.55 68.60 2.03 50.84 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 26 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.07 2.57 6.56 -2.38 -0.02 2.55 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.23 1.82 7.46 -2.91 -0.02 1.80 16 34 H 0.41 7.82 7.53 -92.71 -0.70 7.12 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.37 20.21 7.80 -92.71 -0.72 19.48 16 44 H 0.25 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -85.17 367.43 3.36 -81.81 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.42 Total: 30.42 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 7.00 Total: 3.91 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -5.19 Total: -139.89 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.84 kcal Total: -85.17 3.36 -81.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133935668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.155 kcal (2) G-P(sol) polarization free energy of solvation -85.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds