Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30441 * 125.99120 * 2 1 4 4 N 1.39936 * 108.89858 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.75655 * 179.97438 * 4 3 2 6 6 C 1.34262 * 108.49116 * 359.74684 * 4 3 2 7 7 C 1.38040 * 107.41428 * 0.39455 * 6 4 3 8 8 C 1.47433 * 126.41394 * 179.86840 * 7 6 4 9 9 O 1.21602 * 120.00290 * 184.88335 * 8 7 6 10 10 N 1.34778 * 119.99846 * 4.89320 * 8 7 6 11 11 C 1.46504 * 119.99618 * 185.16574 * 10 8 7 12 12 H 1.08994 * 109.47509 * 34.79988 * 11 10 8 13 13 C 1.53002 * 109.46997 * 274.79567 * 11 10 8 14 14 C 1.52998 * 109.46513 * 154.80237 * 11 10 8 15 15 C 1.52997 * 109.47216 * 294.23391 * 14 11 10 16 16 H 1.09003 * 109.46893 * 54.97520 * 15 14 11 17 17 C 1.52998 * 109.47624 * 294.97019 * 15 14 11 18 18 N 1.46504 * 109.47052 * 174.96945 * 15 14 11 19 19 C 1.36937 * 120.00044 * 203.91771 * 18 15 14 20 20 H 1.08008 * 119.99981 * 4.60093 * 19 18 15 21 21 C 1.38813 * 120.00274 * 184.32700 * 19 18 15 22 22 N 1.31616 * 120.00139 * 173.59616 * 21 19 18 23 23 Si 1.86803 * 119.99664 * 353.59326 * 21 19 18 24 24 H 1.48500 * 109.47030 * 93.18253 * 23 21 19 25 25 H 1.48497 * 109.46905 * 213.17937 * 23 21 19 26 26 H 1.48499 * 109.47187 * 333.18307 * 23 21 19 27 27 H 1.09000 * 109.47518 * 269.96424 * 1 2 3 28 28 H 1.08999 * 109.46746 * 29.96373 * 1 2 3 29 29 H 1.09002 * 109.47255 * 149.96163 * 1 2 3 30 30 H 1.09005 * 109.47385 * 89.97096 * 5 4 3 31 31 H 1.09001 * 109.47507 * 209.97182 * 5 4 3 32 32 H 1.09006 * 109.47335 * 329.97398 * 5 4 3 33 33 H 1.07995 * 126.29262 * 180.24648 * 6 4 3 34 34 H 0.96996 * 120.00325 * 5.16058 * 10 8 7 35 35 H 1.08999 * 109.46463 * 60.00784 * 13 11 10 36 36 H 1.09001 * 109.46903 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.47335 * 300.00528 * 13 11 10 38 38 H 1.09006 * 109.46987 * 174.23874 * 14 11 10 39 39 H 1.08993 * 109.47586 * 54.24260 * 14 11 10 40 40 H 1.08999 * 109.47746 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.46935 * 300.00399 * 17 15 14 42 42 H 1.09004 * 109.46677 * 59.99879 * 17 15 14 43 43 H 0.96996 * 120.00383 * 23.92440 * 18 15 14 44 44 H 0.96998 * 120.00128 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7787 1.5288 -0.0013 6 6 3.6439 -0.6981 0.0047 7 6 2.3372 -1.1433 -0.0005 8 6 1.8914 -2.5486 -0.0002 9 8 0.7079 -2.8111 -0.0947 10 7 2.7958 -3.5424 0.1050 11 6 2.3663 -4.9385 -0.0082 12 1 1.5523 -5.0109 -0.7294 13 6 1.8849 -5.4363 1.3561 14 6 3.5422 -5.7971 -0.4784 15 6 3.9310 -5.3937 -1.9021 16 1 4.1340 -4.3232 -1.9338 17 6 2.7824 -5.7236 -2.8575 18 7 5.1306 -6.1303 -2.3080 19 6 5.9455 -5.6261 -3.2862 20 1 5.7456 -4.6513 -3.7062 21 6 7.0317 -6.3653 -3.7340 22 7 7.7400 -5.9398 -4.7585 23 14 7.4883 -7.9641 -2.8825 24 1 6.8311 -9.1001 -3.5772 25 1 8.9617 -8.1439 -2.9243 26 1 7.0350 -7.9191 -1.4691 27 1 -0.3634 -0.0006 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8896 -0.5144 30 1 5.0686 1.7489 1.0262 31 1 5.6057 1.0386 -0.5150 32 1 4.5308 2.4574 -0.5156 33 1 4.5297 -1.3159 0.0094 34 1 3.7309 -3.3333 0.2557 35 1 1.0472 -4.8245 1.6910 36 1 1.5649 -6.4748 1.2717 37 1 2.6989 -5.3638 2.0772 38 1 3.2530 -6.8480 -0.4647 39 1 4.3919 -5.6454 0.1871 40 1 3.0592 -5.4358 -3.8717 41 1 2.5795 -6.7940 -2.8257 42 1 1.8899 -5.1754 -2.5555 43 1 5.3476 -6.9753 -1.8839 44 1 8.4993 -6.4561 -5.0711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133935670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = 41.263919 kcal Electronic energy + Delta-G solvation = -23943.574529 eV Core-core repulsion = 20511.763268 eV Total energy + Delta-G solvation = -3431.811261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51566 -39.34837 -36.95950 -34.75539 -34.04532 -32.38003 -31.44740 -29.96823 -29.44925 -29.01048 -26.36687 -26.03312 -23.70443 -22.81014 -21.34421 -20.35068 -19.84955 -19.66268 -17.92601 -17.39156 -16.24843 -15.92146 -15.67353 -14.95581 -14.57973 -14.47421 -14.21901 -13.81543 -13.67135 -13.54069 -13.26083 -13.19576 -12.69384 -12.60769 -12.49955 -12.26811 -12.17634 -12.03800 -11.95053 -11.66409 -11.28850 -10.99697 -10.97224 -10.66926 -10.51134 -10.20079 -9.98176 -9.67802 -9.60874 -9.48185 -8.97650 -8.93684 -8.66428 -7.28827 -5.79905 -3.14365 1.40454 2.10471 2.19029 3.35133 3.37256 3.37922 3.43388 3.54058 4.19964 4.47803 4.56956 4.77373 4.81805 4.84039 5.09911 5.11833 5.21458 5.29180 5.32871 5.37923 5.48181 5.59339 5.63825 5.68865 5.76937 5.83549 5.88377 5.95395 6.00938 6.16158 6.23968 6.29152 6.44313 6.47569 6.55293 6.61883 6.72465 6.85916 7.06517 7.44475 7.71643 7.98287 8.39619 8.43070 9.19029 9.91932 10.12491 11.38504 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.004025 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.138423 B = 6954.490500 C = 8094.385039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.131 3.869 3 N -0.306 5.306 4 N -0.362 5.362 5 C 0.096 3.904 6 C 0.104 3.896 7 C -0.289 4.289 8 C 0.597 3.403 9 O -0.546 6.546 10 N -0.719 5.719 11 C 0.146 3.854 12 H 0.093 0.907 13 C -0.161 4.161 14 C -0.137 4.137 15 C 0.179 3.821 16 H 0.053 0.947 17 C -0.167 4.167 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.088 0.912 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.185 0.815 34 H 0.397 0.603 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 10.645 14.013 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 N -0.128 5.128 4 N -0.140 5.140 5 C -0.045 4.045 6 C -0.048 4.048 7 C -0.304 4.304 8 C 0.385 3.615 9 O -0.424 6.424 10 N -0.370 5.370 11 C 0.042 3.958 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.176 4.176 15 C 0.070 3.930 16 H 0.071 0.929 17 C -0.227 4.227 18 N -0.393 5.393 19 C -0.371 4.371 20 H 0.106 0.894 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.202 0.798 34 H 0.231 0.769 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.841 11.977 13.728 20.706 hybrid contribution 1.295 -1.950 0.507 2.395 sum -8.546 10.027 14.235 19.396 Atomic orbital electron populations 1.20348 0.85739 1.04181 1.03326 1.22457 0.97214 0.88782 0.95173 1.77168 0.86010 1.22736 1.26926 1.48283 1.06127 1.04815 1.54732 1.22013 0.83887 0.94804 1.03784 1.23179 0.99159 0.85273 0.97141 1.20287 0.92038 0.94653 1.23404 1.17187 0.85518 0.83410 0.75395 1.90708 1.16482 1.84215 1.51034 1.45934 1.10964 1.06069 1.74063 1.21013 0.97779 0.79687 0.97354 0.88888 1.22173 1.01413 1.01280 0.97115 1.22238 0.97158 0.99745 0.98427 1.20157 0.86773 0.95993 0.90076 0.92898 1.22446 0.98253 1.00457 1.01519 1.42790 1.25802 1.24626 1.46097 1.19046 1.04873 1.02271 1.10922 0.89391 1.24660 0.98691 0.98035 0.97764 1.69722 1.21641 1.40258 1.26522 0.86551 0.77662 0.84943 0.79550 1.21185 1.21842 1.20275 0.90460 0.91200 0.88349 0.90307 0.88738 0.88899 0.79832 0.76890 0.92144 0.91823 0.92761 0.90671 0.91339 0.92522 0.93622 0.93941 0.80803 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.97 36.01 0.36 -0.52 16 2 C 0.13 1.76 7.26 -82.02 -0.60 1.16 16 3 N -0.31 -4.06 12.50 33.89 0.42 -3.63 16 4 N -0.36 -3.89 3.98 -67.60 -0.27 -4.16 16 5 C 0.10 0.60 11.44 59.84 0.68 1.29 16 6 C 0.10 1.11 10.99 -16.56 -0.18 0.93 16 7 C -0.29 -3.78 6.12 -105.06 -0.64 -4.43 16 8 C 0.60 8.46 7.77 -12.52 -0.10 8.37 16 9 O -0.55 -9.09 14.58 5.28 0.08 -9.01 16 10 N -0.72 -8.91 4.46 -54.88 -0.24 -9.15 16 11 C 0.15 1.88 2.41 -67.93 -0.16 1.72 16 12 H 0.09 1.35 5.82 -51.93 -0.30 1.05 16 13 C -0.16 -1.82 9.49 37.16 0.35 -1.47 16 14 C -0.14 -1.93 4.40 -26.73 -0.12 -2.05 16 15 C 0.18 3.24 2.92 -67.93 -0.20 3.05 16 16 H 0.05 0.99 7.59 -51.93 -0.39 0.60 16 17 C -0.17 -2.98 9.24 37.16 0.34 -2.64 16 18 N -0.75 -16.96 4.94 -53.42 -0.26 -17.23 16 19 C -0.24 -6.59 10.39 -15.06 -0.16 -6.75 16 20 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 23 Si 0.88 21.60 27.72 -169.99 -4.71 16.88 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.30 6.56 56.52 0.37 -5.93 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.24 6.47 -51.93 -0.34 0.90 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.18 1.36 7.51 -52.49 -0.39 0.97 16 34 H 0.40 4.20 7.59 -40.82 -0.31 3.89 16 35 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 43 H 0.36 8.00 5.70 -40.82 -0.23 7.77 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -34.85 361.99 -6.23 -41.09 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.96 Total: 9.15 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.51 Total: -1.33 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.42 Total: -62.24 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.85 -6.23 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133935670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.349 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds