Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30441 * 125.99120 * 2 1 4 4 N 1.39936 * 108.89858 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.75655 * 179.97438 * 4 3 2 6 6 C 1.34262 * 108.49116 * 359.74684 * 4 3 2 7 7 C 1.38040 * 107.41428 * 0.39455 * 6 4 3 8 8 C 1.47433 * 126.41394 * 179.86840 * 7 6 4 9 9 O 1.21602 * 120.00290 * 184.88335 * 8 7 6 10 10 N 1.34778 * 119.99846 * 4.89320 * 8 7 6 11 11 C 1.46504 * 119.99618 * 185.16574 * 10 8 7 12 12 H 1.08994 * 109.47509 * 34.79988 * 11 10 8 13 13 C 1.53002 * 109.46997 * 274.79567 * 11 10 8 14 14 C 1.52998 * 109.46513 * 154.80237 * 11 10 8 15 15 C 1.52997 * 109.47216 * 294.23391 * 14 11 10 16 16 H 1.09003 * 109.46893 * 54.97520 * 15 14 11 17 17 C 1.52998 * 109.47624 * 294.97019 * 15 14 11 18 18 N 1.46504 * 109.47052 * 174.96945 * 15 14 11 19 19 C 1.36937 * 120.00044 * 203.91771 * 18 15 14 20 20 H 1.08008 * 119.99981 * 4.60093 * 19 18 15 21 21 C 1.38813 * 120.00274 * 184.32700 * 19 18 15 22 22 N 1.31616 * 120.00139 * 173.59616 * 21 19 18 23 23 Si 1.86803 * 119.99664 * 353.59326 * 21 19 18 24 24 H 1.48500 * 109.47030 * 93.18253 * 23 21 19 25 25 H 1.48497 * 109.46905 * 213.17937 * 23 21 19 26 26 H 1.48499 * 109.47187 * 333.18307 * 23 21 19 27 27 H 1.09000 * 109.47518 * 269.96424 * 1 2 3 28 28 H 1.08999 * 109.46746 * 29.96373 * 1 2 3 29 29 H 1.09002 * 109.47255 * 149.96163 * 1 2 3 30 30 H 1.09005 * 109.47385 * 89.97096 * 5 4 3 31 31 H 1.09001 * 109.47507 * 209.97182 * 5 4 3 32 32 H 1.09006 * 109.47335 * 329.97398 * 5 4 3 33 33 H 1.07995 * 126.29262 * 180.24648 * 6 4 3 34 34 H 0.96996 * 120.00325 * 5.16058 * 10 8 7 35 35 H 1.08999 * 109.46463 * 60.00784 * 13 11 10 36 36 H 1.09001 * 109.46903 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.47335 * 300.00528 * 13 11 10 38 38 H 1.09006 * 109.46987 * 174.23874 * 14 11 10 39 39 H 1.08993 * 109.47586 * 54.24260 * 14 11 10 40 40 H 1.08999 * 109.47746 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.46935 * 300.00399 * 17 15 14 42 42 H 1.09004 * 109.46677 * 59.99879 * 17 15 14 43 43 H 0.96996 * 120.00383 * 23.92440 * 18 15 14 44 44 H 0.96998 * 120.00128 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6111 0.6441 -0.0006 5 6 4.7787 1.5288 -0.0013 6 6 3.6439 -0.6981 0.0047 7 6 2.3372 -1.1433 -0.0005 8 6 1.8914 -2.5486 -0.0002 9 8 0.7079 -2.8111 -0.0947 10 7 2.7958 -3.5424 0.1050 11 6 2.3663 -4.9385 -0.0082 12 1 1.5523 -5.0109 -0.7294 13 6 1.8849 -5.4363 1.3561 14 6 3.5422 -5.7971 -0.4784 15 6 3.9310 -5.3937 -1.9021 16 1 4.1340 -4.3232 -1.9338 17 6 2.7824 -5.7236 -2.8575 18 7 5.1306 -6.1303 -2.3080 19 6 5.9455 -5.6261 -3.2862 20 1 5.7456 -4.6513 -3.7062 21 6 7.0317 -6.3653 -3.7340 22 7 7.7400 -5.9398 -4.7585 23 14 7.4883 -7.9641 -2.8825 24 1 6.8311 -9.1001 -3.5772 25 1 8.9617 -8.1439 -2.9243 26 1 7.0350 -7.9191 -1.4691 27 1 -0.3634 -0.0006 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8896 -0.5144 30 1 5.0686 1.7489 1.0262 31 1 5.6057 1.0386 -0.5150 32 1 4.5308 2.4574 -0.5156 33 1 4.5297 -1.3159 0.0094 34 1 3.7309 -3.3333 0.2557 35 1 1.0472 -4.8245 1.6910 36 1 1.5649 -6.4748 1.2717 37 1 2.6989 -5.3638 2.0772 38 1 3.2530 -6.8480 -0.4647 39 1 4.3919 -5.6454 0.1871 40 1 3.0592 -5.4358 -3.8717 41 1 2.5795 -6.7940 -2.8257 42 1 1.8899 -5.1754 -2.5555 43 1 5.3476 -6.9753 -1.8839 44 1 8.4993 -6.4561 -5.0711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133935670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = 16.642927 kcal Electronic energy + Delta-G solvation = -23944.642175 eV Core-core repulsion = 20511.763268 eV Total energy + Delta-G solvation = -3432.878908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40730 -40.42551 -38.32066 -36.20481 -34.88638 -34.07120 -32.77593 -31.14765 -30.49076 -30.22691 -27.60392 -26.83581 -25.49464 -23.84693 -22.47843 -21.58850 -21.04544 -20.70155 -19.63249 -18.57432 -17.25286 -16.83616 -16.69563 -16.47753 -16.08698 -15.46618 -15.43466 -15.17621 -14.80657 -14.63947 -14.36765 -14.28011 -14.04602 -13.86974 -13.44577 -13.38301 -13.27954 -13.01350 -12.99250 -12.91876 -12.76884 -12.65556 -12.23424 -12.02076 -11.90254 -11.80400 -11.54925 -11.44017 -10.94717 -10.76061 -10.36934 -10.02715 -9.57465 -9.28050 -7.98414 -5.30470 0.53797 1.11754 1.42127 1.44814 1.46598 1.52814 2.37285 2.51325 2.53117 3.32262 3.40194 3.50189 3.72576 4.03986 4.07276 4.16477 4.24300 4.33757 4.40678 4.42882 4.49099 4.52162 4.62977 4.69425 4.69714 4.76908 4.87332 4.96138 4.98053 5.01650 5.02883 5.09909 5.18141 5.38800 5.43407 5.52277 5.56259 5.71061 5.83251 5.89537 6.25975 6.52577 6.74083 7.13591 7.39891 7.90429 8.10345 9.23295 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.004025 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.138423 B = 6954.490500 C = 8094.385039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.114 3.886 3 N -0.331 5.331 4 N -0.360 5.360 5 C 0.086 3.914 6 C 0.117 3.883 7 C -0.318 4.318 8 C 0.596 3.404 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.151 3.849 12 H 0.076 0.924 13 C -0.154 4.154 14 C -0.122 4.122 15 C 0.174 3.826 16 H 0.045 0.955 17 C -0.160 4.160 18 N -0.750 5.750 19 C -0.224 4.224 20 H 0.053 0.947 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.953 3.047 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.243 1.243 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.217 0.783 34 H 0.407 0.593 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.366 0.634 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 9.733 16.326 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.154 5.154 4 N -0.137 5.137 5 C -0.053 4.053 6 C -0.036 4.036 7 C -0.333 4.333 8 C 0.384 3.616 9 O -0.459 6.459 10 N -0.363 5.363 11 C 0.046 3.954 12 H 0.094 0.906 13 C -0.212 4.212 14 C -0.160 4.160 15 C 0.067 3.933 16 H 0.063 0.937 17 C -0.220 4.220 18 N -0.394 5.394 19 C -0.355 4.355 20 H 0.071 0.929 21 C -0.256 4.256 22 N -0.637 5.637 23 Si 0.780 3.220 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.167 1.167 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.243 0.757 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.418 11.088 16.090 21.692 hybrid contribution 1.141 -1.528 -0.257 1.924 sum -8.276 9.560 15.833 20.263 Atomic orbital electron populations 1.20313 0.85211 1.03860 1.03803 1.22751 0.98015 0.89140 0.95403 1.77101 0.87344 1.23121 1.27786 1.48676 1.06242 1.05475 1.53342 1.22400 0.82888 0.94584 1.05470 1.23624 0.99302 0.85554 0.95106 1.20342 0.93240 0.94098 1.25661 1.17364 0.85241 0.84079 0.74867 1.90686 1.17808 1.84734 1.52688 1.45860 1.11297 1.05711 1.73462 1.20928 0.96705 0.79701 0.98054 0.90608 1.22091 1.01344 1.01731 0.96014 1.22083 0.97956 1.00635 0.95373 1.20355 0.85113 0.95212 0.92668 0.93703 1.22346 0.98847 1.01195 0.99573 1.42775 1.26416 1.25076 1.45091 1.18979 1.04933 1.00710 1.10874 0.92902 1.25479 0.99104 1.02282 0.98769 1.69908 1.22610 1.42333 1.28842 0.85422 0.76664 0.79864 0.80023 1.21209 1.22653 1.16723 0.89579 0.90145 0.89897 0.88372 0.86562 0.88625 0.76665 0.75708 0.93416 0.90420 0.91402 0.89266 0.90034 0.95713 0.92765 0.92240 0.80116 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 9.97 71.24 0.71 -0.99 16 2 C 0.11 3.05 7.26 43.52 0.32 3.36 16 3 N -0.33 -8.59 12.50 -46.68 -0.58 -9.17 16 4 N -0.36 -7.17 3.98 -367.78 -1.46 -8.63 16 5 C 0.09 0.88 11.44 127.77 1.46 2.34 16 6 C 0.12 2.29 10.99 84.27 0.93 3.21 16 7 C -0.32 -8.16 6.12 -20.15 -0.12 -8.28 16 8 C 0.60 16.56 7.77 86.67 0.67 17.23 16 9 O -0.58 -19.39 14.58 -4.04 -0.06 -19.45 16 10 N -0.71 -16.40 4.46 -445.79 -1.99 -18.39 16 11 C 0.15 3.53 2.41 44.99 0.11 3.64 16 12 H 0.08 2.08 5.82 -2.39 -0.01 2.07 16 13 C -0.15 -3.03 9.49 71.98 0.68 -2.35 16 14 C -0.12 -3.03 4.40 30.59 0.13 -2.89 16 15 C 0.17 6.00 2.92 44.99 0.13 6.13 16 16 H 0.04 1.63 7.59 -2.39 -0.02 1.61 16 17 C -0.16 -5.56 9.24 71.98 0.67 -4.90 16 18 N -0.75 -32.49 4.94 -322.93 -1.59 -34.08 16 19 C -0.22 -12.22 10.39 84.03 0.87 -11.35 16 20 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.99 -62.12 13.97 21.65 0.30 -61.81 16 23 Si 0.95 43.75 27.72 68.60 1.90 45.65 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.24 -9.72 6.56 99.48 0.65 -9.07 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 2.18 6.47 -2.39 -0.02 2.16 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.22 2.56 7.51 -2.91 -0.02 2.54 16 34 H 0.41 7.61 7.59 -92.71 -0.70 6.91 16 35 H 0.05 1.09 8.11 -2.39 -0.02 1.07 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.86 6.45 -2.38 -0.02 1.84 16 43 H 0.37 15.01 5.70 -92.71 -0.53 14.49 16 44 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -76.90 361.99 3.27 -73.64 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.28 Total: 30.35 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 7.03 Total: 1.89 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -5.33 Total: -132.08 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.45 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Total: -76.90 3.27 -73.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133935670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.279 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds